Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
answers
1
vote
1
reply
1.1k
views
Answer:
Answer: seqinfo got changed after `library(rtracklayer)`
2.4 years ago
Michael Lawrence
★ 11k
2
votes
1
reply
1.1k
views
Answer:
Answer: how to get genomic coordinates from an MIndex object
2.7 years ago
Michael Lawrence
★ 11k
1
vote
1
reply
1.4k
views
Answer:
Answer: IRanges::findOverlapPairs cannot take inputs if they are too large
3.0 years ago
Michael Lawrence
★ 11k
1
vote
1
reply
1.6k
views
Answer:
Answer: liftOver bug, reproducible
3.2 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
888
views
Answer:
Answer: Average coverage between multiple samples
3.4 years ago
Michael Lawrence
★ 11k
2
votes
1
reply
1.0k
views
Answer:
Answer: Recycling a DNAStringSet over an IRangesList in extractAt()
3.4 years ago
Michael Lawrence
★ 11k
1
vote
0
replies
3.8k
views
Answer:
A: How do I subset a GRanges object based on chromosome (and approximate region)?
3.7 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
1.0k
views
Answer:
A: How to create GRanges for TES
4.0 years ago
Michael Lawrence
★ 11k
2
votes
1
reply
1.5k
views
Answer:
A: Genomic Ranges: Convert from 0-base to 1-base
4.0 years ago
Michael Lawrence
★ 11k
1
vote
0
replies
2.2k
views
Answer:
A: Rtracklayer exporting Granges object as bigwig error: Features cannot overlap
4.0 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
765
views
Answer:
A: getting snp and restriction Enzyme site from ucsc genome browswer
4.2 years ago
Michael Lawrence
★ 11k
1
vote
1
reply
1.7k
views
Answer:
A: S4Vectors not loading
4.2 years ago
Michael Lawrence
★ 11k
0
votes
2
replies
1.9k
views
Answer:
A: GenomicRanges: Find first, second and third nearest genes
4.2 years ago
Michael Lawrence
★ 11k
1
vote
0
replies
636
views
Answer:
A: Rtracklayer fails to export TxDb as GFF3 without CDS
4.2 years ago
Michael Lawrence
★ 11k
3
votes
1
reply
1.0k
views
Answer:
A: GenomicRanges: Find N nearest/preceding/following ranges
4.2 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
935
views
Answer:
A: Resize exons in transcript to total width
4.4 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
824
views
Answer:
A: ggbio tracks not aligned when legend present in one track
4.4 years ago
Michael Lawrence
★ 11k
1
vote
1
reply
840
views
Answer:
A: rtracklayer::export empty score
4.4 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
1.5k
views
Answer:
A: Coverage function assigns wrong weights for gapped alignments
4.5 years ago
Michael Lawrence
★ 11k
1
vote
1
reply
948
views
Answer:
A: Is it useful to define and export a setAs('BSgenome', 'GRanges')
4.6 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
1.9k
views
Answer:
A: Filtering GFF3 file
4.6 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
2.4k
views
Answer:
A: Subsetting a GenomicRanges::GRanges with "%in%" fails
4.6 years ago
Michael Lawrence
★ 11k
4
votes
2
replies
1.5k
views
Answer:
A: seqlengths is not an exported object from namespace GenomicRanges
4.7 years ago
Michael Lawrence
★ 11k
1
vote
1
reply
1.6k
views
Answer:
A: ggbio - change transcript label sizes
4.7 years ago
Michael Lawrence
★ 11k
1
vote
1
reply
1.6k
views
Answer:
A: Correct way to split and unsplit a DataFrame
4.7 years ago
Michael Lawrence
★ 11k
2
votes
2
replies
938
views
Answer:
A: VariantAnnotation - subset multi-allele variants
4.8 years ago
Michael Lawrence
★ 11k
2
votes
3
replies
6.8k
views
Answer:
A: Extract metadata from GRanges object for every genomic coordinate
4.8 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
767
views
Answer:
A: negative AD value interfering with readVcfasVRanges
4.9 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
979
views
Answer:
A: Assesing genomic segment enrichment with GenomicRanges (R-package)
4.9 years ago
Michael Lawrence
★ 11k
2
votes
0
replies
909
views
Answer:
A: DataFrame after splitting and back
5.0 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
1.4k
views
Answer:
A: Aggregating scores of multiple metadata columns from one GRanges object on anoth
5.1 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
1.2k
views
Answer:
A: RSBML wrong edges
5.1 years ago
Michael Lawrence
★ 11k
4
votes
0
replies
1.1k
views
Answer:
A: What's the recommended way to overwrite the seqinfo of a GRanges?
5.1 years ago
Michael Lawrence
★ 11k
2
votes
0
replies
803
views
Answer:
A: Error in reading sbml file
5.2 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
880
views
Answer:
A: feel confused when identifying overlapping regions by intersect method
5.2 years ago
Michael Lawrence
★ 11k
2
votes
1
reply
1.2k
views
Answer:
A: How to set track attributes in rtracklayer
5.2 years ago
Michael Lawrence
★ 11k
1
vote
1
reply
983
views
Answer:
A: How can I create a GmapGenome that doesn't start at index 1?
5.2 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
1.1k
views
Answer:
A: How to filter gff based on certain gene list in rtracklayer?
5.2 years ago
Michael Lawrence
★ 11k
2
votes
1
reply
1.3k
views
Answer:
A: Bug in rtracklayer::import of amino acid fasta sequences
5.2 years ago
Michael Lawrence
★ 11k
2
votes
0
replies
1.5k
views
Answer:
A: rtracklayer BigBed format
5.3 years ago
Michael Lawrence
★ 11k
2
votes
0
replies
1.1k
views
Answer:
A: Speed efficient way to select the n-th element from GRangsList
5.4 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
1.1k
views
Answer:
A: Efficient counting of nucleotide changes in short-reads
5.4 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
1.2k
views
Answer:
A: Subset bam file in R
5.4 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
1.2k
views
Answer:
A: rtracklayer::Problem with export.bw of GRanges object created by unlisted after
5.4 years ago
Michael Lawrence
★ 11k
1
vote
1
reply
2.6k
views
Answer:
A: How to convert bedgraph to wig
5.4 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
1.2k
views
Answer:
A: rtracklayer cannot export empty BED file
5.4 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
1.2k
views
Answer:
A: Error in gmapR: gsnap not functioning
5.4 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
711
views
Answer:
A: Bug report for GenomicRanges
5.4 years ago
Michael Lawrence
★ 11k
2
votes
1
reply
1.3k
views
Answer:
A: Split GRanges to GRangeList based on mcols value
5.4 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
1.7k
views
Answer:
A: unable to load rsbml for piano reporter metabolite analysis
5.5 years ago
Michael Lawrence
★ 11k
562 results • Page
1 of 12
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6