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Answer: Answer: seqinfo got changed after `library(rtracklayer)`
2.4 years ago Michael Lawrence ★ 11k
2
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1
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1.1k
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Answer: Answer: how to get genomic coordinates from an MIndex object
2.8 years ago Michael Lawrence ★ 11k
1
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1
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1.5k
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Answer: Answer: IRanges::findOverlapPairs cannot take inputs if they are too large
3.1 years ago Michael Lawrence ★ 11k
1
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1
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1.6k
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Answer: Answer: liftOver bug, reproducible
3.3 years ago Michael Lawrence ★ 11k
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0
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919
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Answer: Answer: Average coverage between multiple samples
3.4 years ago Michael Lawrence ★ 11k
2
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1
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1.0k
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Answer: Answer: Recycling a DNAStringSet over an IRangesList in extractAt()
3.4 years ago Michael Lawrence ★ 11k
1
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0
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3.9k
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Answer: A: How do I subset a GRanges object based on chromosome (and approximate region)?
3.7 years ago Michael Lawrence ★ 11k
0
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1
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1.1k
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Answer: A: How to create GRanges for TES
4.0 years ago Michael Lawrence ★ 11k
2
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1
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1.5k
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Answer: A: Genomic Ranges: Convert from 0-base to 1-base
4.1 years ago Michael Lawrence ★ 11k
1
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0
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2.3k
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Answer: A: Rtracklayer exporting Granges object as bigwig error: Features cannot overlap
4.1 years ago Michael Lawrence ★ 11k
0
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0
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795
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Answer: A: getting snp and restriction Enzyme site from ucsc genome browswer
4.2 years ago Michael Lawrence ★ 11k
1
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1
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1.8k
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Answer: A: S4Vectors not loading
4.2 years ago Michael Lawrence ★ 11k
0
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2
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2.0k
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Answer: A: GenomicRanges: Find first, second and third nearest genes
4.2 years ago Michael Lawrence ★ 11k
1
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0
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646
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Answer: A: Rtracklayer fails to export TxDb as GFF3 without CDS
4.3 years ago Michael Lawrence ★ 11k
3
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1
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1.0k
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Answer: A: GenomicRanges: Find N nearest/preceding/following ranges
4.3 years ago Michael Lawrence ★ 11k
0
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1
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947
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Answer: A: Resize exons in transcript to total width
4.4 years ago Michael Lawrence ★ 11k
0
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1
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836
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Answer: A: ggbio tracks not aligned when legend present in one track
4.4 years ago Michael Lawrence ★ 11k
1
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1
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853
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Answer: A: rtracklayer::export empty score
4.5 years ago Michael Lawrence ★ 11k
0
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0
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1.6k
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Answer: A: Coverage function assigns wrong weights for gapped alignments
4.6 years ago Michael Lawrence ★ 11k
1
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1
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963
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Answer: A: Is it useful to define and export a setAs('BSgenome', 'GRanges')
4.7 years ago Michael Lawrence ★ 11k
0
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0
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1.9k
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Answer: A: Filtering GFF3 file
4.7 years ago Michael Lawrence ★ 11k
0
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1
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2.4k
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Answer: A: Subsetting a GenomicRanges::GRanges with "%in%" fails
4.7 years ago Michael Lawrence ★ 11k
4
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2
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1.5k
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Answer: A: seqlengths is not an exported object from namespace GenomicRanges
4.7 years ago Michael Lawrence ★ 11k
1
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1
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1.6k
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Answer: A: ggbio - change transcript label sizes
4.7 years ago Michael Lawrence ★ 11k
1
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1
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1.6k
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Answer: A: Correct way to split and unsplit a DataFrame
4.7 years ago Michael Lawrence ★ 11k
2
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2
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954
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Answer: A: VariantAnnotation - subset multi-allele variants
4.8 years ago Michael Lawrence ★ 11k
2
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3
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6.9k
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Answer: A: Extract metadata from GRanges object for every genomic coordinate
4.9 years ago Michael Lawrence ★ 11k
0
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0
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777
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Answer: A: negative AD value interfering with readVcfasVRanges
4.9 years ago Michael Lawrence ★ 11k
0
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0
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993
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Answer: A: Assesing genomic segment enrichment with GenomicRanges (R-package)
5.0 years ago Michael Lawrence ★ 11k
2
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0
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929
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Answer: A: DataFrame after splitting and back
5.1 years ago Michael Lawrence ★ 11k
0
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1
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1.4k
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Answer: A: Aggregating scores of multiple metadata columns from one GRanges object on anoth
5.1 years ago Michael Lawrence ★ 11k
0
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0
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1.2k
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Answer: A: RSBML wrong edges
5.1 years ago Michael Lawrence ★ 11k
4
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0
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1.1k
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Answer: A: What's the recommended way to overwrite the seqinfo of a GRanges?
5.2 years ago Michael Lawrence ★ 11k
2
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0
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814
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Answer: A: Error in reading sbml file
5.2 years ago Michael Lawrence ★ 11k
0
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1
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896
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Answer: A: feel confused when identifying overlapping regions by intersect method
5.2 years ago Michael Lawrence ★ 11k
2
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1
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1.2k
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Answer: A: How to set track attributes in rtracklayer
5.2 years ago Michael Lawrence ★ 11k
1
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1
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994
views
Answer: A: How can I create a GmapGenome that doesn't start at index 1?
5.3 years ago Michael Lawrence ★ 11k
0
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0
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1.1k
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Answer: A: How to filter gff based on certain gene list in rtracklayer?
5.3 years ago Michael Lawrence ★ 11k
2
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1
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1.4k
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Answer: A: Bug in rtracklayer::import of amino acid fasta sequences
5.3 years ago Michael Lawrence ★ 11k
2
votes
0
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1.5k
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Answer: A: rtracklayer BigBed format
5.4 years ago Michael Lawrence ★ 11k
2
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0
replies
1.1k
views
Answer: A: Speed efficient way to select the n-th element from GRangsList
5.4 years ago Michael Lawrence ★ 11k
0
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1
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1.1k
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Answer: A: Efficient counting of nucleotide changes in short-reads
5.4 years ago Michael Lawrence ★ 11k
0
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0
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1.2k
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Answer: A: Subset bam file in R
5.5 years ago Michael Lawrence ★ 11k
0
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0
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1.3k
views
Answer: A: rtracklayer::Problem with export.bw of GRanges object created by unlisted after
5.5 years ago Michael Lawrence ★ 11k
1
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1
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2.6k
views
Answer: A: How to convert bedgraph to wig
5.5 years ago Michael Lawrence ★ 11k
0
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1
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1.2k
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Answer: A: rtracklayer cannot export empty BED file
5.5 years ago Michael Lawrence ★ 11k
0
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0
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1.2k
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Answer: A: Error in gmapR: gsnap not functioning
5.5 years ago Michael Lawrence ★ 11k
0
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0
replies
717
views
Answer: A: Bug report for GenomicRanges
5.5 years ago Michael Lawrence ★ 11k
2
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1
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1.3k
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Answer: A: Split GRanges to GRangeList based on mcols value
5.5 years ago Michael Lawrence ★ 11k
0
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1
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1.7k
views
Answer: A: unable to load rsbml for piano reporter metabolite analysis
5.5 years ago Michael Lawrence ★ 11k
562 results • Page 1 of 12
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