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Answer: A: Split AME .tsv file into GRanges object or DataFrame
5.5 years ago Michael Lawrence ★ 11k
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1.4k
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Answer: A: browseGenome with Shiny
5.5 years ago Michael Lawrence ★ 11k
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1
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2.4k
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Answer: A: Selecting columns form a list of grange objects
5.6 years ago Michael Lawrence ★ 11k
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0
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2.0k
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Answer: A: rtracklayer export bedGraph cannot be loaded into UCSC
5.6 years ago Michael Lawrence ★ 11k
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0
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2.4k
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Answer: A: rsbml package does not compile on linux
5.7 years ago Michael Lawrence ★ 11k
2
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1
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1.5k
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Answer: A: the closest gene to a breakpoint
5.7 years ago Michael Lawrence ★ 11k
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0
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992
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Answer: A: Large Size of R packages containing S4 classes
5.7 years ago Michael Lawrence ★ 11k
1
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0
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971
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Answer: A: Subsetting GRanges objext
5.7 years ago Michael Lawrence ★ 11k
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2.4k
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Answer: A: Import Chain - Cannot Import Chain File
5.7 years ago Michael Lawrence ★ 11k
2
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0
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861
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Answer: A: IRanges seqselect and subsetByRanges
5.8 years ago Michael Lawrence ★ 11k
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0
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727
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Answer: A: motifs order on importing the motifs from bigWig file
5.8 years ago Michael Lawrence ★ 11k
3
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1.7k
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Answer: A: Problem when transforming Platypus vcf to VRanges
5.8 years ago Michael Lawrence ★ 11k
4
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1
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1.8k
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Answer: A: How do I do a bedtools like intersection in GenomicRanges?
5.8 years ago Michael Lawrence ★ 11k
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1.7k
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Answer: A: Merging each element of a list of Genomic range
5.9 years ago Michael Lawrence ★ 11k
1
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0
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1.9k
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Answer: A: Issue with UCSC and rtracklayer: 'names' attribute [210] must be the same length
6.0 years ago Michael Lawrence ★ 11k
0
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1
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2.1k
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Answer: A: S4Vectors and subectHits error
6.0 years ago Michael Lawrence ★ 11k
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0
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1.1k
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Answer: A: rtracklayer::liftOver parameters (minMatch)
6.1 years ago Michael Lawrence ★ 11k
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0
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887
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Answer: A: rtracklayer colorByStrand - is it possible to add quotes?
6.1 years ago Michael Lawrence ★ 11k
1
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1
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1.4k
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Answer: A: Detecting Overlaps within Grange Object
6.1 years ago Michael Lawrence ★ 11k
2
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1
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867
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Answer: A: Features within 2kb window, but with resampling
6.1 years ago Michael Lawrence ★ 11k
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0
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825
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Answer: A: import bed file with track line fails
6.1 years ago Michael Lawrence ★ 11k
1
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0
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886
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Answer: A: rtracklayer demo bug
6.1 years ago Michael Lawrence ★ 11k
2
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0
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744
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Answer: A: Finding the nearest n genes from a genomic loci
6.1 years ago Michael Lawrence ★ 11k
2
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1
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1.8k
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Answer: A: Splitting lines of a GRanges object based on character list
6.2 years ago Michael Lawrence ★ 11k
1
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1
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1.7k
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Answer: A: Genomic Features UCSC refseq genes "Download the knownGene table ... Error: Bad
6.3 years ago Michael Lawrence ★ 11k
1
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1
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5.3k
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Answer: A: GenomicRanges: identify overlapping regions, get intersection between each overl
6.3 years ago Michael Lawrence ★ 11k
1
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1
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1.4k
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Answer: A: GRanges object from gene list
6.3 years ago Michael Lawrence ★ 11k
2
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1
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1.6k
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Answer: A: Make window around TSS and get values from another data.frame for bins of the sp
6.3 years ago Michael Lawrence ★ 11k
1
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0
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1.1k
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Answer: A: seqnames versus chrom
6.3 years ago Michael Lawrence ★ 11k
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1
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2.1k
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Answer: A: Add columns to granges object that sum score around range
6.3 years ago Michael Lawrence ★ 11k
1
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1
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3.4k
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Answer: A: Generate 3' UTR and 5' UTR ranges from a gff file
6.4 years ago Michael Lawrence ★ 11k
3
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2
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1.5k
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Answer: A: breakTies for a Hits-object based on value in mcols?
6.4 years ago Michael Lawrence ★ 11k
0
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1
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2.1k
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Answer: A: possible Rtracklayer issue: TxDb errors in GenomicFeatures package-- cannot load
6.4 years ago Michael Lawrence ★ 11k
0
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1
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1.5k
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Answer: A: makeTxdbFromUCSC in genomicfeatures package is broken
6.4 years ago Michael Lawrence ★ 11k
1
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0
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1.8k
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Answer: A: Intron length per transcript using GenomicFeatures
6.4 years ago Michael Lawrence ★ 11k
0
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0
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893
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Answer: A: GRangesList: wiered error
6.4 years ago Michael Lawrence ★ 11k
0
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1
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938
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Answer: A: cmetindex missing in gmapr? Not possible to do bisulfite alignments
6.5 years ago Michael Lawrence ★ 11k
3
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1
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2.0k
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Answer: A: unlist a exons GRangeslist object and add a gene name column
6.5 years ago Michael Lawrence ★ 11k
2
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1
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1.5k
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Answer: A: How to build a RNA-seq table of counts for repeatmasker annotations
6.5 years ago Michael Lawrence ★ 11k
2
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1
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6.1k
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Answer: A: Subset GRanges object into new object
6.5 years ago Michael Lawrence ★ 11k
2
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1
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1.2k
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Answer: A: Weaknesses with GRanges data type, or just me ?
6.5 years ago Michael Lawrence ★ 11k
1
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0
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908
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Answer: A: Finding distance between end of all ORFs in utr and start of first cds exon in t
6.5 years ago Michael Lawrence ★ 11k
4
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0
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781
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Answer: A: Combine 5' leaders and 1st exon of cds into GRangesList
6.5 years ago Michael Lawrence ★ 11k
1
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0
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919
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Answer: A: The track cannot show in UCSC
6.6 years ago Michael Lawrence ★ 11k
0
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0
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4.8k
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Answer: A: GenomicAlignments - extracting sequence signatures from bam file
6.6 years ago Michael Lawrence ★ 11k
2
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1
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4.7k
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Answer: A: Could not find function "makeTranscriptDbFromGFF"
6.6 years ago Michael Lawrence ★ 11k
1
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0
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4.3k
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Answer: A: Gene Size using GenomicFeatures
6.6 years ago Michael Lawrence ★ 11k
1
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1
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1.5k
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Answer: A: Implementing fast mathematical and statistical operations on genomic variables i
6.6 years ago Michael Lawrence ★ 11k
1
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1
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1.2k
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Answer: A: Can rtracklayer import tab-delimited BED files with unquoted spaces in fields?
6.6 years ago Michael Lawrence ★ 11k
4
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1
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6.0k
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Answer: A: converting a GRangesList object with different lengths into a data frame
6.6 years ago Michael Lawrence ★ 11k
562 results • Page 2 of 12
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