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Showing :
answers
2
votes
1
reply
1.4k
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Answer:
A: Error in normSplitFactor(f, x)
6.7 years ago
Michael Lawrence
★ 11k
6
votes
2
replies
3.9k
views
Answer:
A: summarize scores of GRanges into bins
6.7 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
2.3k
views
Answer:
A: Extract isoform-specific ranges
6.8 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
2.9k
views
Answer:
A: rtracklayer::lifOver one-to-many regions and not match UCSC
6.8 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
1.7k
views
Answer:
A: liftOver function in rtracklayer package is not working
6.8 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
2.2k
views
Answer:
A: Isoforms detection using bioconductor
6.8 years ago
Michael Lawrence
★ 11k
2
votes
1
reply
1.7k
views
Answer:
A: Getting error using GenomicRanges::setdiff
6.8 years ago
Michael Lawrence
★ 11k
1
vote
1
reply
3.0k
views
Answer:
A: (Big)wig file of complete chromosome
6.8 years ago
Michael Lawrence
★ 11k
2
votes
0
replies
1.6k
views
Answer:
A: Extracting UTRs from exon and CDS data
6.8 years ago
Michael Lawrence
★ 11k
3
votes
1
reply
1.3k
views
Answer:
A: matrix as a column of mcols of GRanges would not be extracted correctly by lappl
6.8 years ago
Michael Lawrence
★ 11k
1
vote
0
replies
954
views
Answer:
A: Width in IRanges objects on "+" and "-" strand
6.8 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
911
views
Answer:
A: Irange _ Start and End
6.8 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
1.3k
views
Answer:
A: sortSeqlevels is not sorting for GRanges object
6.9 years ago
Michael Lawrence
★ 11k
2
votes
1
reply
1.8k
views
Answer:
A: reduce function after combining 2 GRanges objects from cn.mops output
6.9 years ago
Michael Lawrence
★ 11k
2
votes
1
reply
1.8k
views
Answer:
A: reduce function after combining 2 GRanges objects from cn.mops output
6.9 years ago
Michael Lawrence
★ 11k
2
votes
0
replies
1.1k
views
Answer:
A: GenomicRanges::gaps() not working as expected
6.9 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
3.0k
views
Answer:
A: GenomicFeatures package ERROR
7.0 years ago
Michael Lawrence
★ 11k
3
votes
2
replies
4.7k
views
Answer:
A: What is the proper way to modify mcols of a GRanges inside a GRangesList?
7.0 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
1.1k
views
Answer:
A: Genomicfeatures- Error: Image not found, dynamic loading, reputed error???
7.0 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
1.5k
views
Answer:
A: Can I create a GmapGenome with a relative file path?
7.0 years ago
Michael Lawrence
★ 11k
1
vote
0
replies
898
views
Answer:
A: Obtain exactly the interval that overlap
7.0 years ago
Michael Lawrence
★ 11k
2
votes
0
replies
1.2k
views
Answer:
A: Split Genomic Ranges With Reference Overlaps (Centromere)
7.0 years ago
Michael Lawrence
★ 11k
3
votes
1
reply
1.3k
views
Answer:
A: trying to annotate overlaps with external file information
7.0 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
1.2k
views
Answer:
A: Data structure for my dataset
7.0 years ago
Michael Lawrence
★ 11k
2
votes
1
reply
1.4k
views
Answer:
A: rtracklayer::import.bed does not close connections.
7.0 years ago
Michael Lawrence
★ 11k
1
vote
0
replies
967
views
Answer:
A: Bug report: unpredictable coloumn ranaming in DataFrame class
7.1 years ago
Michael Lawrence
★ 11k
2
votes
1
reply
4.3k
views
Answer:
A: What is the best way to subset a DNAStringSet by a GRange ?
7.1 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
1.3k
views
Answer:
A: findOverlaps - how to get adjacent ranges?
7.1 years ago
Michael Lawrence
★ 11k
2
votes
0
replies
962
views
Answer:
A: pintersect and psetdiff changed behavior
7.1 years ago
Michael Lawrence
★ 11k
3
votes
1
reply
1.5k
views
Answer:
A: filtering VCF files
7.2 years ago
Michael Lawrence
★ 11k
2
votes
1
reply
4.3k
views
Answer:
A: rtracklayer: how to export gff file with gene names included?
7.2 years ago
Michael Lawrence
★ 11k
2
votes
0
replies
843
views
Answer:
A: Why export of empty GRanges to GFF fails?
7.2 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
1.4k
views
Answer:
A: In ggbio, plot transcripts from a TxDb with gene labels
7.2 years ago
Michael Lawrence
★ 11k
2
votes
1
reply
2.2k
views
Answer:
A: Printing DataFrame with nested DataFrames causes error
7.3 years ago
Michael Lawrence
★ 11k
1
vote
1
reply
1.3k
views
Answer:
A: convert a sequence to Ranges object
7.3 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
3.8k
views
Answer:
A: Identify truncated repetitive sequences in 10kbp promoter region in Mouse
7.3 years ago
Michael Lawrence
★ 11k
2
votes
1
reply
1.9k
views
Answer:
A: VariantAnnotation - expand not working as intended for VCF
7.3 years ago
Michael Lawrence
★ 11k
2
votes
1
reply
1.2k
views
Answer:
A: Integer overflow when tabulating read coverage
7.3 years ago
Michael Lawrence
★ 11k
1
vote
1
reply
1.3k
views
Answer:
A: plotting proteases digestion points in a protein
7.3 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
2.9k
views
Answer:
A: Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() fun
7.3 years ago
Michael Lawrence
★ 11k
2
votes
0
replies
1.3k
views
Answer:
A: Aggregate read counts by non-uniform overlapping sliding windows
7.3 years ago
Michael Lawrence
★ 11k
1
vote
0
replies
1.9k
views
Answer:
A: Best way to create a VRanges object from a large VCF file?
7.3 years ago
Michael Lawrence
★ 11k
3
votes
1
reply
1.0k
views
Answer:
A: rtracklayer: how to view coordinates that failed liftover?
7.4 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
817
views
Answer:
A: count coverage for exact matches to sequence pattern
7.4 years ago
Michael Lawrence
★ 11k
1
vote
1
reply
1.7k
views
Answer:
A: Calculate fraction of bases (GRanges) that have non-zero coverage (RleList)
7.4 years ago
Michael Lawrence
★ 11k
1
vote
1
reply
1.3k
views
Answer:
A: ggbio tracks () does not allow "call" class in the "main" slot of the function
7.4 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
1.3k
views
Answer:
A: How to find the distance between the integration site and gene
7.4 years ago
Michael Lawrence
★ 11k
1
vote
1
reply
1.8k
views
Answer:
A: GenomicAlignment::pintersect() of two overlapping ranges - CIGAR is empty after
7.4 years ago
Michael Lawrence
★ 11k
0
votes
1
reply
1.5k
views
Answer:
A: ggbio: integrate different plots
7.4 years ago
Michael Lawrence
★ 11k
1
vote
1
reply
1.3k
views
Answer:
A: Obtain the specific range that overlap
7.4 years ago
Michael Lawrence
★ 11k
562 results • Page
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