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4
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1
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2.3k
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Answer: A: DESeq2: interaction term as in limma
7.7 years ago Simon Anders ★ 3.8k
1
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2
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20k
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Comment: C: standard error value (lfcSE) returned by DeSeq2
7.7 years ago Simon Anders ★ 3.8k
0
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1
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20k
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Comment: C: standard error value (lfcSE) returned by DeSeq2
7.7 years ago Simon Anders ★ 3.8k
1
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1
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6.6k
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Answer: A: DESEq2 error when performing exploratory analysis with no replicates
8.1 years ago Simon Anders ★ 3.8k
2
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1
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3.1k
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Answer: A: Design: DESeq2 and continuous variables
8.1 years ago Simon Anders ★ 3.8k
0
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1
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3.1k
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Comment: C: Design: DESeq2 and continuous variables
8.1 years ago Simon Anders ★ 3.8k
0
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0
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4.7k
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Comment: C: DESEQ2 linear model of dose
8.1 years ago Simon Anders ★ 3.8k
2
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0
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1.4k
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Answer: A: DESEQ2 : When we merge technical replicates raw reads, do we need to divide by t
8.2 years ago Simon Anders ★ 3.8k
18
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3
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16k
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Answer: A: Usability of ERCC spike-ins in standard RNAseq experiments
8.2 years ago Simon Anders ★ 3.8k
0
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1
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4.7k
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Comment: C: DESEQ2 linear model of dose
8.2 years ago Simon Anders ★ 3.8k
0
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2
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4.7k
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Answer: A: DESEQ2 linear model of dose
8.2 years ago Simon Anders ★ 3.8k
0
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1
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4.7k
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Comment: C: DESEQ2 linear model of dose
8.2 years ago Simon Anders ★ 3.8k
0
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1
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4.7k
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Comment: C: DESEQ2 linear model of dose
8.2 years ago Simon Anders ★ 3.8k
0
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0
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778
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Answer: A: about sets of replicates in RNA-seq and quality controls
8.2 years ago Simon Anders ★ 3.8k
3
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1
reply
2.4k
views
Answer: A: Deseq2 DE between WT and MUTANT normalised with respect to control
8.2 years ago Simon Anders ★ 3.8k
0
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0
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1.3k
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Comment: C: DESeq1 design, result and inference
8.3 years ago Simon Anders ★ 3.8k
1
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1
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1.5k
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Answer: A: question regarding custom normalizationFactors in DESeq2
8.3 years ago Simon Anders ★ 3.8k
0
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0
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4.1k
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Comment: C: How to properly normalize a single-cell sparse matrix?
8.3 years ago Simon Anders ★ 3.8k
1
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1
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4.1k
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Answer: A: How to properly normalize a single-cell sparse matrix?
8.3 years ago Simon Anders ★ 3.8k
0
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1
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4.5k
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Comment: C: Disagreement between TMM (edgeR) and RLE (DESeq) normalisation for single-cell d
8.3 years ago Simon Anders ★ 3.8k
0
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0
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752
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Comment: C: 3 replicates vs 2 replicates biased outcome?
8.4 years ago Simon Anders ★ 3.8k
0
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0
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4.2k
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Answer: A: DESeq: Error in model.matrix.formula(design(object), data = colData(object)) :
8.5 years ago Simon Anders ★ 3.8k
0
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0
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5.1k
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Comment: C: Does DESeq2 or edgeR take care of random effect in the GLM
8.5 years ago Simon Anders ★ 3.8k
5
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2
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31k
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Answer: A: DESEq2 Paired samples Before and after treatment
8.5 years ago Simon Anders ★ 3.8k
1
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1
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31k
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Comment: C: DESEq2 Paired samples Before and after treatment
8.5 years ago Simon Anders ★ 3.8k
0
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0
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1.3k
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Answer: A: DEXseq for alternate promoter usage
8.5 years ago Simon Anders ★ 3.8k
3
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1
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6.3k
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Answer: A: GSEA-like enrichment score calculation
8.5 years ago Simon Anders ★ 3.8k
3
votes
0
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12k
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Answer: A: Error bars DESeq or DESeq2 fold change
8.7 years ago Simon Anders ★ 3.8k
1
vote
1
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11k
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Answer: A: Difference between DESeq and DESeq2
8.7 years ago Simon Anders ★ 3.8k
0
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0
replies
1.8k
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Comment: C: DESeq2 product of sizeFactors is not 1
8.7 years ago Simon Anders ★ 3.8k
2
votes
2
replies
14k
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Comment: C: how DESeq calculates p-value ?
8.8 years ago Simon Anders ★ 3.8k
0
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0
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2.3k
views
Job: PhD Positions in Helsinki
bioinformatics job Helsinki Finland Job
8.9 years ago Simon Anders ★ 3.8k
0
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0
replies
2.1k
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Comment: C: GRangesList and `seqlevels<-` with force=TRUE
8.9 years ago Simon Anders ★ 3.8k
4
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5
replies
2.1k
views
GRangesList and `seqlevels<-` with force=TRUE
GRangesList GenomicRanges
updated 8.9 years ago by 16k • written 8.9 years ago by ★ 3.8k
0
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1
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2.1k
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Comment: C: GRangesList and `seqlevels<-` with force=TRUE
8.9 years ago Simon Anders ★ 3.8k
0
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2
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4.6k
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Comment: C: looping through a GRangesList object
8.9 years ago Simon Anders ★ 3.8k
0
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0
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4.6k
views
Comment: C: looping through a GRangesList object
8.9 years ago Simon Anders ★ 3.8k
9
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11
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4.6k
views
looping through a GRangesList object
GenomicRanges GRangesList
updated 8.9 years ago by ★ 1.3k • written 8.9 years ago by ★ 3.8k
0
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0
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4.6k
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Comment: C: lopping through a GRangesList object
8.9 years ago Simon Anders ★ 3.8k
0
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0
replies
2.3k
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Comment: C: How to find the differentially expressed genes for paired tumor normal samples w
9.1 years ago Simon Anders ★ 3.8k
0
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1
reply
2.3k
views
Comment: C: How to find the differentially expressed genes for paired tumor normal samples w
9.1 years ago Simon Anders ★ 3.8k
3
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0
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8.4k
views
Comment: C: Normalization methodology in DESeq/DESeq2 vs edgeR
9.1 years ago Simon Anders ★ 3.8k
4
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4
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8.4k
views
Answer: A: Normalization methodology in DESeq/DESeq2 vs edgeR
9.1 years ago Simon Anders ★ 3.8k
1
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0
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8.4k
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Comment: C: Normalization methodology in DESeq/DESeq2 vs edgeR
9.1 years ago Simon Anders ★ 3.8k
0
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0
replies
8.4k
views
Comment: C: Normalization methodology in DESeq/DESeq2 vs edgeR
9.1 years ago Simon Anders ★ 3.8k
0
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1
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1.5k
views
Answer: A: Question on DESeq2 on concatenated factors model vs. full interaction model
9.1 years ago Simon Anders ★ 3.8k
1
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2
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4.8k
views
Answer: A: Can DESeq2 deal with zero-inflated data
9.1 years ago Simon Anders ★ 3.8k
0
votes
1
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12k
views
Answer: A: Deseq2 rlog or 'regular' normalization?
9.2 years ago Simon Anders ★ 3.8k
1
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0
replies
3.7k
views
Answer: A: about DEseq for spike-in datasets
9.3 years ago Simon Anders ★ 3.8k
0
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0
replies
3.7k
views
Comment: C: about DEseq for spike-in datasets
9.3 years ago Simon Anders ★ 3.8k
389 results • Page 2 of 8
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