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Comment: C: DESeq2: Starting from count tables
9.4 years ago Simon Anders ★ 3.8k
3
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1
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2.9k
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Answer: A: DESeq2 with paired samples - problem with the design
9.4 years ago Simon Anders ★ 3.8k
2
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1
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6.9k
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Answer: A: DESeq2 interaction term
9.4 years ago Simon Anders ★ 3.8k
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2
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2.3k
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Comment: C: Check DESeq2 contrasts for exon vs intron changes
9.4 years ago Simon Anders ★ 3.8k
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3.3k
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Answer: A: DESeq2 model with blocking factor + interaction term
9.4 years ago Simon Anders ★ 3.8k
1
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0
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2.1k
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Job: PhD student and post-doctoral position (computational, molecular medicine)
job biostatistics molecular medicine computational biology Job
9.5 years ago Simon Anders ★ 3.8k
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1
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4.8k
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Comment: C: DESeq2: Compare expression of one group to the mean of others
9.5 years ago Simon Anders ★ 3.8k
0
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1
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3.8k
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Answer: A: Calculate DESeq2 fold change of 1 gene to 1 of the sample
9.6 years ago Simon Anders ★ 3.8k
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0
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5.0k
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Comment: C: Deseq2: How to adjust for baseline read counts when testing for groups differenc
9.6 years ago Simon Anders ★ 3.8k
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0
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3.1k
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Comment: C: Help with DESeq2 Multiple Factor Design
9.7 years ago Simon Anders ★ 3.8k
0
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0
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2.0k
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Answer: A: DEXSeq with multiple conditions
updated 9.8 years ago by 43k • written 9.8 years ago by ★ 3.8k
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0
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5.8k
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Answer: A: Error in estimateDispersionsFit [DESeq2]
9.8 years ago Simon Anders ★ 3.8k
1
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0
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1.6k
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Answer: A: Multi factor analysis in DEXSeq
9.9 years ago Simon Anders ★ 3.8k
0
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0
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4.7k
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Comment: C: deseq: all padj values equal to 1
9.9 years ago Simon Anders ★ 3.8k
0
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1
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1.5k
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Comment: C: Implementation of SAM statistical technique in R
9.9 years ago Simon Anders ★ 3.8k
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1
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1.5k
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Answer: A: Implementation of SAM statistical technique in R
9.9 years ago Simon Anders ★ 3.8k
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0
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947
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Answer: A: DeSEQ for transcriptomes of pathogens
9.9 years ago Simon Anders ★ 3.8k
8
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1
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5.0k
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Answer: A: DEXSeq Usage and Expression Confusion
9.9 years ago Simon Anders ★ 3.8k
0
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0
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1.4k
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Answer: A: question about DESeq: estimateDispersions
10.0 years ago Simon Anders ★ 3.8k
1
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1
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5.9k
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Answer: A: Only one replicate: inferring dispersion from other group
10.0 years ago Simon Anders ★ 3.8k
2
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0
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3.1k
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Answer: A: Reference for differential gene expression analysis
10.0 years ago Simon Anders ★ 3.8k
1
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0
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7.6k
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Comment: C: DESeq2 rlog transformation
10.0 years ago Simon Anders ★ 3.8k
2
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1
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3.4k
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Answer: A: Using Sailfish estimated read-counts for DESeq2 analysis
10.1 years ago Simon Anders ★ 3.8k
0
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0
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1.6k
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Comment: C: DEXSeq error: Count files do not correspond to the flattened annotation file
10.1 years ago Simon Anders ★ 3.8k
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1
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1.7k
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Comment: C: DESeq Dispersion Estimation for Classification Purpose
10.1 years ago Simon Anders ★ 3.8k
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1
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26k
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Comment: C: DEseq2 time-series design.
10.1 years ago Simon Anders ★ 3.8k
0
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1
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26k
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Answer: A: DEseq2 time-series design.
10.1 years ago Simon Anders ★ 3.8k
0
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1
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1.4k
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Answer: A: About correlation tests between pairs of genes
10.1 years ago Simon Anders ★ 3.8k
0
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1
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9.7k
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Comment: C: DESeq2 timecourse - How to set the experimental design
10.2 years ago Simon Anders ★ 3.8k
2
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0
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9.7k
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Answer: A: DESeq2 timecourse - How to set the experimental design
10.2 years ago Simon Anders ★ 3.8k
0
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0
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7.0k
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Comment: C: DESeq2: removing levels from a factor or not having them in the analysis at all
10.2 years ago Simon Anders ★ 3.8k
0
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2
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4.3k
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Comment: C: DESeq2: making specific comparisons between samples that have two conditions and
10.2 years ago Simon Anders ★ 3.8k
1
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1
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4.8k
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Answer: A: Using DESeq2 with few biological replicates
10.2 years ago Simon Anders ★ 3.8k
0
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0
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4.8k
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Answer: A: DESeq2: What is the impact if glm.fit does not converge during rlogTransformatio
10.2 years ago Simon Anders ★ 3.8k
0
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4
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2.5k
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IlluminaHumanMethylation450k.db has undeclared dependency on AnnotationForge
annotationforge
updated 10.2 years ago by ★ 7.2k • written 10.2 years ago by ★ 3.8k
0
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1
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1.2k
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Comment: C: Documentation for FeatureDB class?
10.2 years ago Simon Anders ★ 3.8k
1
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4
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1.2k
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Documentation for FeatureDB class?
FeatureDB GenomicFeatures
updated 10.2 years ago by 67k • written 10.2 years ago by ★ 3.8k
0
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0
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2.5k
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Comment: C: IlluminaHumanMethylation450k.db has undeclared dependency on AnnotationForge
10.2 years ago Simon Anders ★ 3.8k
0
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0
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4.3k
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Comment: C: multiple level factors contrast in nbinomLRT, DESeq2.
10.3 years ago Simon Anders ★ 3.8k
0
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0
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2.1k
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Answer: A: Multifactor model design for DE analysis (DESeq2 & edgeR)
10.3 years ago Simon Anders ★ 3.8k
0
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1
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1.5k
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Comment: C: DEXSeq- fitDispersionFunction error
10.4 years ago Simon Anders ★ 3.8k
0
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1
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2.3k
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Answer: A: DESEq | Batch effect | VST data and linear model adjustment
10.4 years ago Simon Anders ★ 3.8k
0
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0
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816
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Answer: A: FW: Help with DESeq
10.4 years ago Simon Anders ★ 3.8k
0
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1
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3.1k
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Comment: C: Expected number of DE genes?
10.4 years ago Simon Anders ★ 3.8k
0
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0
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812
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R: Re: R: Re: R: Re: Deseq2 and differentia expression
10.4 years ago Simon Anders ★ 3.8k
0
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0
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1.2k
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R: Re: Deseq2 and differentia expression
SPIA SPIA
10.4 years ago Simon Anders ★ 3.8k
0
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0
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1.8k
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Deseq2 and differentia expression
10.4 years ago Simon Anders ★ 3.8k
0
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0
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5.8k
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Answer: A: DESeq2, problems using list argument to extract results from DESeq
10.4 years ago Simon Anders ★ 3.8k
0
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0
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1.3k
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Answer: A: error when estimating Dispersions for count table data in DESeq
10.4 years ago Simon Anders ★ 3.8k
2
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0
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4.6k
views
Answer: A: Running DESeq with 1000 samples
10.4 years ago Simon Anders ★ 3.8k
389 results • Page 3 of 8
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