Showing : annotationforge • reset
1
vote
5
replies
197
views
Gene ID conversion for pathway enrichment analysis of differentially expressed genes
GeneIDConversion AnnotationForge
updated 5 weeks ago by ★ 2.9k • written 6 weeks ago by • 0
0
votes
3
replies
149
views
AnnotationForge: makeOrgPackageFromNCBI Error in function (type, msg, asError = TRUE) : FTP response timeout
AnnotationForge
updated 9 weeks ago by 2.9k • written 9 weeks ago by • 0
2
votes
4
replies
130
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI NCBI SQL AnnotationForge
updated 12 months ago by 56k • written 12 months ago by • 0
4
votes
5
replies
296
views
makeOrgPackage - ERROR: Two fields in the source DB have the same name
software error AnnotationForge AnnotationDbi
updated 12 months ago by 56k • written 12 months ago by • 0
3
votes
3
replies
111
views
AnnotationForge run by three days and do not end
annotation AnnotationForge
12 months ago Marcelo Laia ▴ 440
1
vote
1
reply
220
views
How to get GOSemSim work on custom packages built with AnnotationForge
Guangchuang Yu GOSemSim AnnotationForge
updated 12 months ago by 2.9k • written 12 months ago by • 0
0
votes
4
replies
134
views
AnnotationForge not working for building custom org packages
AnnotationForge Marc Carlson Hervé Pagès
updated 12 months ago by 56k • written 12 months ago by • 0
0
votes
6
replies
125
views
Problem with installing packages made by makeOrgPackageFromNCBI
AnnotationForge makeOrgPackageFromNCBI gene ontology edgeR pathwayanalysis
updated 14 months ago by 56k • written 14 months ago by • 0
0
votes
2
replies
112
views
error with downloading NCBI data for makeorgpackagefromNCBI?
annotationforge makeOrgPackageFromNCBI
updated 14 months ago by 56k • written 14 months ago by • 0
0
votes
2
replies
105
views
makeOrgPackage Error in .deriveTableNameFromField(field = keytype, x) : Two fields in the source DB have the same name
software error go AnnotationForge AnnotationDbi
updated 15 months ago by 56k • written 15 months ago by • 0
0
votes
0
replies
289
views
topGO::annFUN.org() problem due to case-sensitivity of OrgDb field names
topGO AnnotationForge
2.2 years ago psutton • 0
0
votes
7
replies
501
views
go_bp table in custom OrgDb package
annotation go pcaExplorer AnnotationForge
updated 2.2 years ago by 56k • written 2.2 years ago by • 0
1
vote
7
replies
404
views
Error:object 'lookup_tax_id_by_organism' not found with makeOrgPackageFromNCBI
annotationforge
updated 2.7 years ago by 56k • written 2.7 years ago by • 0
1
vote
3
replies
459
views
makeOrgPackageFromNCBI - cannot connect to BioMart
annotationforge
updated 2.8 years ago by 56k • written 2.8 years ago by • 0
1
vote
3
replies
434
views
Running GO analysis via Prostar
prostar proteomics rforproteomics annotationforge
updated 3.0 years ago by • 0 • written 3.0 years ago by ▴ 20
2
votes
2
replies
421
views
Queries around makeOrgPackageFromNCBI
R software error annotationforge
updated 3.0 years ago by ★ 2.9k • written 3.0 years ago by • 0
0
votes
1
reply
570
views
AnnotationForge, RNAseq, and non-model organism
AnnotationForge annotationforge nonmodel rnaseq
updated 3.4 years ago by 56k • written 3.4 years ago by • 0
2
votes
3
replies
1.1k
views
custom annotation for GO enrichment
annotationforge GSEA clusterprofiler GO annotation
3.8 years ago cabezasdelafuented ▴ 10
0
votes
10
replies
605
views
Error during makeOrgPackageFromNCBI
annotationforge makeorgpackagefromncbi
3.8 years ago gabciamm • 0
0
votes
1
reply
997
views
AnnotationForge makeOrgPackage rsqlite_send_query error
annotationforge makeorgpackage
3.9 years ago marisa.e.miller • 0
3
votes
7
replies
1.0k
views
makeOrgPackage in AnnotationForge "GID" problem
annotationforge
updated 4.1 years ago by 56k • written 4.1 years ago by • 0
0
votes
0
replies
635
views
create custom 'System Biology' annotation package - class not found
AnnotationDb annotationdbi AnnotationForge
4.2 years ago Laure Cougnaud ▴ 20
3
votes
6
replies
1.4k
views
RSQLite::dbGetPreparedQuery() is deprecated in AnnotationForge
annotation microarray annotate annotationforge
4.3 years ago MOD • 0
0
votes
12
replies
2.0k
views
Easy way to turn OrgDb object from AnnotationHub into package?
AnnotationHub AnnotationDbi AnnotationForge pathview
updated 4.3 years ago by ★ 6.7k • written 4.3 years ago by ★ 2.0k
1
vote
22
replies
1.9k
views
problem with makeOrgPackageFromNCBI when making an annotation package
bioconductor R annotationforge
updated 4.4 years ago by ▴ 10 • written 4.8 years ago by • 0
0
votes
3
replies
556
views
error while making database using Annotationforge package
annotationforge error database
updated 4.8 years ago by ★ 2.9k • written 4.8 years ago by ▴ 10
5
votes
22
replies
3.9k
views
sqliteSendQuery error in AnnotationForge bioconductor package
bioconductor annotationforge annotationdbi annotation r
updated 4.8 years ago by ▴ 980 • written 6.2 years ago by • 0
0
votes
4
replies
1.4k
views
AnnotationForge failed due to "Parameter 0 does not have length 1"
AnnotationForge
updated 5.3 years ago by ★ 6.7k • written 5.3 years ago by • 0
0
votes
1
reply
569
views
errors for makeOrgPackageFromNCBI in AnnotationForge
AnnotationForge
updated 5.4 years ago by 14k • written 5.4 years ago by • 0
0
votes
2
replies
799
views
Error in makeOrgPackageFromNCBI for Medicago truncatula
annotation annotationforge
updated 5.5 years ago by 25k • written 5.5 years ago by • 0
0
votes
2
replies
667
views
makeOrgPackage: possible to add option to allow GO terms now in GO.db?
annotationforge makeorgpackage go
5.9 years ago Keith Hughitt ▴ 130
0
votes
5
replies
1.3k
views
Error during makeOrgPackageFromNCBI
annotation annotationforge annotationdbi makeorgpackagefromncbi
6.3 years ago oliver.tills • 0
0
votes
4
replies
1.6k
views
IlluminaHumanMethylation450k.db has undeclared dependency on AnnotationForge
annotationforge
updated 6.6 years ago by ★ 7.2k • written 6.6 years ago by ★ 3.6k
1
vote
2
replies
1.2k
views
AnnotationForge: org.Xx.eg.db created with makeOrgPackage() is missing org.Xx.egGO object.
organismdb annotationdbi annotationforge
updated 6.6 years ago by ★ 7.2k • written 6.6 years ago by ▴ 80
3
votes
9
replies
1.6k
views
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles AnnotationForge Bimap GO
6.7 years ago • updated 6.6 years ago artur ▴ 80
3
votes
3
replies
6.2k
views
error: "'names' attribute [16] must be the same length as the vector [2]", using Making Organism packages use of makeOrgPackage()
annotationforge Annotation GO
updated 6.7 years ago by ★ 7.2k • written 6.7 years ago by ▴ 80
0
votes
0
replies
692
views
Failure to Install Organism Package from AnnotationForge
Organism AnnotationDbi AnnotationForge Organism AnnotationDbi AnnotationForge
7.3 years ago Guest User ★ 12k
1
vote
1
reply
1.3k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf
updated 7.6 years ago by 56k • written 7.6 years ago by ▴ 80
0
votes
1
reply
932
views
Error using makeDBPackage() from AnnotationForge package
Annotation probe AnnotationForge Annotation probe AnnotationForge
updated 7.7 years ago by ★ 7.2k • written 7.7 years ago by ▴ 80
1
vote
3
replies
828
views
Bug in makeOrgPackageFromNCBI from AnnotationForge?
Alignment Annotation Organism Schizosaccharomyces pombe biomaRt AnnotationForge Alignment
updated 7.7 years ago by ★ 7.2k • written 7.7 years ago by ▴ 220
0
votes
1
reply
585
views
答复: an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
7.8 years ago joseph ▴ 40
0
votes
1
reply
568
views
an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
updated 7.8 years ago by ★ 7.2k • written 7.8 years ago by ▴ 40
0
votes
1
reply
1.0k
views
nsFilter error in genefilter
GO hgu133plus2 cdf GSVA AnnotationForge GO hgu133plus2 cdf GSVA AnnotationForge
updated 7.9 years ago by 56k • written 7.9 years ago by ▴ 90
0
votes
12
replies
2.6k
views
Have troubles with finding Annotations for Bovine and Rhesus\' platforms
Microarray GO oligo AnnotationForge Microarray GO oligo AnnotationForge
8.2 years ago James W. MacDonald 56k
44 results • Page 1 of 1
Recent ...
Replies
Comment: Warning in EnhancedVolcano plot by Kevin Blighe 2.9k
Thanks - that is interesting to know.
Comment: Warning in EnhancedVolcano plot by charles.feigin ▴ 20
Sorry, one more quick reply. So, changing lengthConnectors and/or directionConnectors doesn't let me render any more connectors, but I foun…
Comment: Warning in EnhancedVolcano plot by charles.feigin ▴ 20
Ok I understand. I'll play around with these. Thank you!
Answer: How to make OrgPackage (BSgenome data) package available for R Bioconductor user by Hervé Pagès 14k
What organisms are they?
Comment: "dim<-" against on-disk arrays by Hervé Pagès 14k
I will look into this although I don't promise anything. Even though many of the operations supported by standard arrays can be implemented…
Votes
Comment: Warning in EnhancedVolcano plot
Comment: Warning in EnhancedVolcano plot
Comment: Warning in EnhancedVolcano plot
Comment: Warning in EnhancedVolcano plot
A: How to make a (limma) heatmap displaying gene ID's as rownames
Awards • All
Scholar to Aaron Lun ★ 26k
Popular Question to Nik Tuzov ▴ 70
Scholar to James W. MacDonald 56k
Scholar to swbarnes2 ▴ 730
Popular Question to rfes • 0
Locations • All
USA/New York/Nathan Kline Institute for Psychiatric Research, 7 minutes ago
United States, 9 minutes ago
United States, 9 minutes ago
The city by the bay, 12 minutes ago
WEHI, Melbourne, Australia, 40 minutes ago
Traffic: 444 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6