Showing : annotationforge • reset
1
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5
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Gene ID conversion for pathway enrichment analysis of differentially expressed genes
GeneIDConversion AnnotationForge
updated 5 months ago by ★ 3.0k • written 5 months ago by • 0
0
votes
3
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233
views
AnnotationForge: makeOrgPackageFromNCBI Error in function (type, msg, asError = TRUE) : FTP response timeout
AnnotationForge
updated 6 months ago by 3.4k • written 6 months ago by • 0
2
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4
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227
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MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI NCBI SQL AnnotationForge
updated 16 months ago by 58k • written 16 months ago by • 0
4
votes
5
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513
views
makeOrgPackage - ERROR: Two fields in the source DB have the same name
software error AnnotationForge AnnotationDbi
updated 16 months ago by 58k • written 16 months ago by • 0
3
votes
3
replies
166
views
AnnotationForge run by three days and do not end
annotation AnnotationForge
16 months ago Marcelo Laia ▴ 440
1
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1
reply
315
views
How to get GOSemSim work on custom packages built with AnnotationForge
Guangchuang Yu GOSemSim AnnotationForge
updated 17 months ago by 3.4k • written 17 months ago by • 0
0
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4
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196
views
AnnotationForge not working for building custom org packages
AnnotationForge Marc Carlson Hervé Pagès
updated 17 months ago by 58k • written 17 months ago by • 0
0
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6
replies
233
views
Problem with installing packages made by makeOrgPackageFromNCBI
AnnotationForge makeOrgPackageFromNCBI gene ontology edgeR pathwayanalysis
updated 18 months ago by 58k • written 18 months ago by • 0
0
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2
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193
views
error with downloading NCBI data for makeorgpackagefromNCBI?
annotationforge makeOrgPackageFromNCBI
updated 19 months ago by 58k • written 19 months ago by • 0
0
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2
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172
views
makeOrgPackage Error in .deriveTableNameFromField(field = keytype, x) : Two fields in the source DB have the same name
software error go AnnotationForge AnnotationDbi
updated 20 months ago by 58k • written 20 months ago by • 0
0
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0
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394
views
topGO::annFUN.org() problem due to case-sensitivity of OrgDb field names
topGO AnnotationForge
2.5 years ago psutton • 0
0
votes
7
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634
views
go_bp table in custom OrgDb package
annotation go pcaExplorer AnnotationForge
updated 2.5 years ago by 58k • written 2.5 years ago by • 0
1
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7
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493
views
Error:object 'lookup_tax_id_by_organism' not found with makeOrgPackageFromNCBI
annotationforge
updated 3.1 years ago by 58k • written 3.1 years ago by • 0
1
vote
3
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524
views
makeOrgPackageFromNCBI - cannot connect to BioMart
annotationforge
updated 3.1 years ago by 58k • written 3.1 years ago by • 0
1
vote
3
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586
views
Running GO analysis via Prostar
prostar proteomics rforproteomics annotationforge
updated 3.3 years ago by • 0 • written 3.3 years ago by ▴ 20
2
votes
2
replies
497
views
Queries around makeOrgPackageFromNCBI
R software error annotationforge
updated 3.4 years ago by ★ 3.0k • written 3.4 years ago by • 0
0
votes
1
reply
641
views
AnnotationForge, RNAseq, and non-model organism
AnnotationForge annotationforge nonmodel rnaseq
updated 3.8 years ago by 58k • written 3.8 years ago by • 0
2
votes
3
replies
1.2k
views
custom annotation for GO enrichment
annotationforge GSEA clusterprofiler GO annotation
4.1 years ago cabezasdelafuented ▴ 10
0
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10
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685
views
Error during makeOrgPackageFromNCBI
annotationforge makeorgpackagefromncbi
4.2 years ago gabciamm • 0
0
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1
reply
1.1k
views
AnnotationForge makeOrgPackage rsqlite_send_query error
annotationforge makeorgpackage
4.2 years ago marisa.e.miller • 0
3
votes
7
replies
1.1k
views
makeOrgPackage in AnnotationForge "GID" problem
annotationforge
updated 4.4 years ago by 58k • written 4.4 years ago by • 0
0
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0
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682
views
create custom 'System Biology' annotation package - class not found
AnnotationDb annotationdbi AnnotationForge
4.6 years ago Laure Cougnaud ▴ 20
3
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6
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1.5k
views
RSQLite::dbGetPreparedQuery() is deprecated in AnnotationForge
annotation microarray annotate annotationforge
4.6 years ago MOD • 0
0
votes
12
replies
2.2k
views
Easy way to turn OrgDb object from AnnotationHub into package?
AnnotationHub AnnotationDbi AnnotationForge pathview
updated 4.6 years ago by ★ 6.7k • written 4.6 years ago by ★ 2.0k
1
vote
22
replies
2.2k
views
problem with makeOrgPackageFromNCBI when making an annotation package
bioconductor R annotationforge
updated 4.7 years ago by ▴ 10 • written 5.1 years ago by • 0
0
votes
3
replies
634
views
error while making database using Annotationforge package
annotationforge error database
updated 5.2 years ago by ★ 3.0k • written 5.2 years ago by ▴ 10
5
votes
22
replies
4.1k
views
sqliteSendQuery error in AnnotationForge bioconductor package
bioconductor annotationforge annotationdbi annotation r
updated 5.2 years ago by ▴ 980 • written 6.6 years ago by • 0
0
votes
4
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1.5k
views
AnnotationForge failed due to "Parameter 0 does not have length 1"
AnnotationForge
updated 5.7 years ago by ★ 6.7k • written 5.7 years ago by • 0
0
votes
1
reply
615
views
errors for makeOrgPackageFromNCBI in AnnotationForge
AnnotationForge
updated 5.8 years ago by 15k • written 5.8 years ago by • 0
0
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2
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915
views
Error in makeOrgPackageFromNCBI for Medicago truncatula
annotation annotationforge
updated 5.9 years ago by 25k • written 5.9 years ago by • 0
0
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2
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736
views
makeOrgPackage: possible to add option to allow GO terms now in GO.db?
annotationforge makeorgpackage go
6.3 years ago Keith Hughitt ▴ 150
0
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5
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1.3k
views
Error during makeOrgPackageFromNCBI
annotation annotationforge annotationdbi makeorgpackagefromncbi
6.7 years ago • updated 6.6 years ago oliver.tills • 0
0
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4
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1.6k
views
IlluminaHumanMethylation450k.db has undeclared dependency on AnnotationForge
annotationforge
updated 7.0 years ago by ★ 7.2k • written 7.0 years ago by ★ 3.7k
1
vote
2
replies
1.2k
views
AnnotationForge: org.Xx.eg.db created with makeOrgPackage() is missing org.Xx.egGO object.
organismdb annotationdbi annotationforge
updated 7.0 years ago by ★ 7.2k • written 7.0 years ago by ▴ 80
3
votes
9
replies
1.7k
views
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles AnnotationForge Bimap GO
7.0 years ago artur ▴ 80
3
votes
3
replies
6.4k
views
error: "'names' attribute [16] must be the same length as the vector [2]", using Making Organism packages use of makeOrgPackage()
annotationforge Annotation GO
updated 7.0 years ago by ★ 7.2k • written 7.0 years ago by ▴ 80
0
votes
0
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731
views
Failure to Install Organism Package from AnnotationForge
Organism AnnotationDbi AnnotationForge Organism AnnotationDbi AnnotationForge
7.6 years ago Guest User ★ 12k
1
vote
1
reply
1.3k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf
updated 8.0 years ago by 58k • written 8.0 years ago by ▴ 80
0
votes
1
reply
977
views
Error using makeDBPackage() from AnnotationForge package
Annotation probe AnnotationForge Annotation probe AnnotationForge
updated 8.0 years ago by ★ 7.2k • written 8.0 years ago by ▴ 80
1
vote
3
replies
921
views
Bug in makeOrgPackageFromNCBI from AnnotationForge?
Alignment Annotation Organism Schizosaccharomyces pombe biomaRt AnnotationForge Alignment
updated 8.1 years ago by ★ 7.2k • written 8.1 years ago by ▴ 220
0
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1
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630
views
答复: an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
8.1 years ago joseph ▴ 40
0
votes
1
reply
611
views
an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
updated 8.1 years ago by ★ 7.2k • written 8.1 years ago by ▴ 40
0
votes
1
reply
1.1k
views
nsFilter error in genefilter
GO hgu133plus2 cdf GSVA AnnotationForge GO hgu133plus2 cdf GSVA AnnotationForge
updated 8.2 years ago by 58k • written 8.2 years ago by ▴ 90
0
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12
replies
2.8k
views
Have troubles with finding Annotations for Bovine and Rhesus\' platforms
Microarray GO oligo AnnotationForge Microarray GO oligo AnnotationForge
8.6 years ago James W. MacDonald 58k
44 results • Page 1 of 1
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Answer: Undefined columns error R cytometry analysis by Jiang, Mike ★ 1.3k
I see you are trying to fill the missing transform info to `gs_bcell_auto` , which is a hack, but since you seems to know what you are doin…
Comment: how to get MFI stats from data by Jiang, Mike ★ 1.3k
Can you grant the public caccess to you fcs to reproduce your issue?
Answer: Getting a dataset that only contains the flow data within the gated area by Jiang, Mike ★ 1.3k
You didn't post your example code, so here is my best guess of your workflow > library(flowCore) > library(flowWorkspace) …
Comment: Diffbind dba.plotProfile attempt to select less than one element in OneIndex by bhanratt • 0
``` > DBA 10 Samples, 31953 sites in matrix: ID Tissue Factor Condition Replicate Reads FRiP 1 58 1 H3K4me3 AD …
Answer: Warning messages on Apple M1 BigSur by Vincent J. Carey, Jr. 6.5k
We are not producing M1 binaries at this time. If you use the intel version of R under Rosetta 2 you can use the intel mac binaries.
Votes
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
Awards • All
Scholar to Jiang, Mike ★ 1.3k
Popular Question to James W. MacDonald 58k
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Scholar to jbnrodriguez • 0
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