Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
annotationforge
•
reset
0
votes
8
replies
269
views
AnnotationForge::makeOrgPackage GO Ids mistake
AnnotationHubData
AnnotationForge
26 days ago • updated 24 days ago
Saber_J
• 0
3
votes
2
replies
758
views
Install package without updating dependent package
Install
AnnotationForge
5 months ago
亮
• 0
0
votes
7
replies
575
views
how to create an OrgDb package?
orgDb
annotationForge
updated 5 weeks ago by
pengxinyang12
• 0 • written 7 months ago by
Haibo Liu
• 0
1
vote
5
replies
494
views
Gene ID conversion for pathway enrichment analysis of differentially expressed genes
GeneIDConversion
AnnotationForge
updated 13 months ago by
Guido Hooiveld
★ 3.2k • written 13 months ago by
AbhilashKumar.Tripathi
• 0
0
votes
3
replies
410
views
AnnotationForge: makeOrgPackageFromNCBI Error in function (type, msg, asError = TRUE) : FTP response timeout
AnnotationForge
updated 14 months ago by
Kevin Blighe
3.5k • written 14 months ago by
Imad
• 0
2
votes
4
replies
353
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI
NCBI
SQL
AnnotationForge
updated 2.0 years ago by
James W. MacDonald
59k • written 2.0 years ago by
chefer
• 0
4
votes
5
replies
759
views
makeOrgPackage - ERROR: Two fields in the source DB have the same name
software error
AnnotationForge
AnnotationDbi
updated 2.0 years ago by
James W. MacDonald
59k • written 2.0 years ago by
jdiaz
• 0
3
votes
3
replies
242
views
AnnotationForge run by three days and do not end
annotation
AnnotationForge
2.1 years ago • updated 2.0 years ago
Marcelo Laia
▴ 450
1
vote
1
reply
527
views
How to get GOSemSim work on custom packages built with AnnotationForge
Guangchuang Yu
GOSemSim
AnnotationForge
updated 2.1 years ago by
Kevin Blighe
3.5k • written 2.1 years ago by
Cei
• 0
0
votes
4
replies
285
views
AnnotationForge not working for building custom org packages
AnnotationForge
Marc Carlson
Hervé Pagès
updated 2.1 years ago by
James W. MacDonald
59k • written 2.1 years ago by
Cei
• 0
0
votes
6
replies
353
views
Problem with installing packages made by makeOrgPackageFromNCBI
AnnotationForge
makeOrgPackageFromNCBI
gene ontology
edgeR
pathwayanalysis
updated 2.2 years ago by
James W. MacDonald
59k • written 2.2 years ago by
babak.loghmani
• 0
0
votes
2
replies
345
views
error with downloading NCBI data for makeorgpackagefromNCBI?
annotationforge
makeOrgPackageFromNCBI
updated 2.2 years ago by
James W. MacDonald
59k • written 2.2 years ago by
lesneski
• 0
0
votes
2
replies
267
views
makeOrgPackage Error in .deriveTableNameFromField(field = keytype, x) : Two fields in the source DB have the same name
software error
go
AnnotationForge
AnnotationDbi
updated 2.3 years ago by
James W. MacDonald
59k • written 2.3 years ago by
tzaquin
• 0
0
votes
0
replies
543
views
topGO::annFUN.org() problem due to case-sensitivity of OrgDb field names
topGO
AnnotationForge
3.2 years ago
psutton
• 0
0
votes
7
replies
843
views
go_bp table in custom OrgDb package
annotation
go
pcaExplorer
AnnotationForge
updated 3.2 years ago by
James W. MacDonald
59k • written 3.2 years ago by
psutton
• 0
1
vote
7
replies
621
views
Error:object 'lookup_tax_id_by_organism' not found with makeOrgPackageFromNCBI
annotationforge
updated 3.7 years ago by
James W. MacDonald
59k • written 3.7 years ago by
sbbinfo90
• 0
1
vote
3
replies
630
views
makeOrgPackageFromNCBI - cannot connect to BioMart
annotationforge
updated 3.8 years ago by
James W. MacDonald
59k • written 3.8 years ago by
lukeholman
• 0
1
vote
3
replies
804
views
Running GO analysis via Prostar
prostar
proteomics
rforproteomics
annotationforge
updated 4.0 years ago by
Samuel Wieczorek
▴ 10 • written 4.0 years ago by
lolli.langan
▴ 20
2
votes
2
replies
601
views
Queries around makeOrgPackageFromNCBI
R
software error
annotationforge
updated 4.1 years ago by
Guido Hooiveld
★ 3.2k • written 4.1 years ago by
laural710
• 0
0
votes
1
reply
764
views
AnnotationForge, RNAseq, and non-model organism
AnnotationForge
annotationforge
nonmodel
rnaseq
updated 4.4 years ago by
James W. MacDonald
59k • written 4.4 years ago by
mlpimsler
• 0
2
votes
3
replies
1.2k
views
custom annotation for GO enrichment
annotationforge
GSEA
clusterprofiler
GO
annotation
4.8 years ago
cabezasdelafuented
▴ 10
0
votes
10
replies
791
views
Error during makeOrgPackageFromNCBI
annotationforge
makeorgpackagefromncbi
4.8 years ago
gabciamm
• 0
0
votes
1
reply
1.2k
views
AnnotationForge makeOrgPackage rsqlite_send_query error
annotationforge
makeorgpackage
4.9 years ago
marisa.e.miller
• 0
3
votes
7
replies
1.4k
views
makeOrgPackage in AnnotationForge "GID" problem
annotationforge
updated 5.1 years ago by
James W. MacDonald
59k • written 5.1 years ago by
samanthapizi
• 0
0
votes
0
replies
743
views
create custom 'System Biology' annotation package - class not found
AnnotationDb
annotationdbi
AnnotationForge
5.3 years ago
Laure Cougnaud
▴ 20
3
votes
6
replies
1.7k
views
RSQLite::dbGetPreparedQuery() is deprecated in AnnotationForge
annotation
microarray
annotate
annotationforge
5.3 years ago
MOD
• 0
0
votes
12
replies
2.7k
views
Easy way to turn OrgDb object from AnnotationHub into package?
AnnotationHub
AnnotationDbi
AnnotationForge
pathview
updated 5.3 years ago by
Valerie Obenchain
★ 6.7k • written 5.3 years ago by
Jenny Drnevich
★ 2.0k
1
vote
22
replies
2.8k
views
problem with makeOrgPackageFromNCBI when making an annotation package
bioconductor
R
annotationforge
updated 5.4 years ago by
theobroma22
▴ 10 • written 5.8 years ago by
wssdandan2009
• 0
0
votes
3
replies
734
views
error while making database using Annotationforge package
annotationforge
error
database
updated 5.8 years ago by
Guido Hooiveld
★ 3.2k • written 5.8 years ago by
kritikamish99
▴ 10
5
votes
22
replies
4.3k
views
sqliteSendQuery error in AnnotationForge bioconductor package
bioconductor
annotationforge
annotationdbi
annotation
r
updated 5.8 years ago by
Axel Klenk
▴ 990 • written 7.3 years ago by
Stephen H
• 0
1
vote
4
replies
1.8k
views
AnnotationForge failed due to "Parameter 0 does not have length 1"
AnnotationForge
updated 6.4 years ago by
Valerie Obenchain
★ 6.7k • written 6.4 years ago by
zhilongjia
• 0
0
votes
1
reply
698
views
errors for makeOrgPackageFromNCBI in AnnotationForge
AnnotationForge
updated 6.5 years ago by
Hervé Pagès
15k • written 6.5 years ago by
songeric1107
• 0
0
votes
2
replies
1.0k
views
Error in makeOrgPackageFromNCBI for Medicago truncatula
annotation
annotationforge
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
chiapello.m
• 0
0
votes
2
replies
818
views
makeOrgPackage: possible to add option to allow GO terms now in GO.db?
annotationforge
makeorgpackage
go
6.9 years ago
Keith Hughitt
▴ 150
0
votes
5
replies
1.4k
views
Error during makeOrgPackageFromNCBI
annotation
annotationforge
annotationdbi
makeorgpackagefromncbi
7.3 years ago
oliver.tills
• 0
0
votes
4
replies
1.7k
views
IlluminaHumanMethylation450k.db has undeclared dependency on AnnotationForge
annotationforge
updated 7.6 years ago by
Marc Carlson
★ 7.2k • written 7.7 years ago by
Simon Anders
★ 3.7k
1
vote
2
replies
1.4k
views
AnnotationForge: org.Xx.eg.db created with makeOrgPackage() is missing org.Xx.egGO object.
organismdb
annotationdbi
annotationforge
updated 7.7 years ago by
Marc Carlson
★ 7.2k • written 7.7 years ago by
artur
▴ 80
3
votes
9
replies
1.9k
views
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles
AnnotationForge
Bimap
GO
7.7 years ago
artur
▴ 80
3
votes
3
replies
6.9k
views
error: "'names' attribute [16] must be the same length as the vector [2]", using Making Organism packages use of makeOrgPackage()
annotationforge
Annotation
GO
updated 7.7 years ago by
Marc Carlson
★ 7.2k • written 7.7 years ago by
artur
▴ 80
0
votes
0
replies
804
views
Failure to Install Organism Package from AnnotationForge
Organism
AnnotationDbi
AnnotationForge
Organism
AnnotationDbi
AnnotationForge
8.3 years ago
Guest User
★ 12k
1
vote
1
reply
1.5k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation
Organism
zebrafish
cdf
affy
AnnotationForge
Annotation
Organism
zebrafish
cdf
updated 8.6 years ago by
James W. MacDonald
59k • written 8.6 years ago by
Joao Sollari Lopes
▴ 80
0
votes
1
reply
1.1k
views
Error using makeDBPackage() from AnnotationForge package
Annotation
probe
AnnotationForge
Annotation
probe
AnnotationForge
updated 8.7 years ago by
Marc Carlson
★ 7.2k • written 8.7 years ago by
gabriel teku
▴ 80
1
vote
3
replies
1.1k
views
Bug in makeOrgPackageFromNCBI from AnnotationForge?
Alignment
Annotation
Organism
Schizosaccharomyces pombe
biomaRt
AnnotationForge
Alignment
updated 8.7 years ago by
Marc Carlson
★ 7.2k • written 8.7 years ago by
Marco Blanchette
▴ 220
0
votes
1
reply
750
views
答复: an error in AnnotationForge
Annotation
ChipName
annotate
affy
AnnotationForge
Annotation
ChipName
annotate
affy
8.8 years ago
joseph
▴ 40
0
votes
1
reply
699
views
an error in AnnotationForge
Annotation
ChipName
annotate
affy
AnnotationForge
Annotation
ChipName
annotate
affy
updated 8.8 years ago by
Marc Carlson
★ 7.2k • written 8.8 years ago by
joseph
▴ 40
0
votes
1
reply
1.2k
views
nsFilter error in genefilter
GO
hgu133plus2
cdf
GSVA
AnnotationForge
GO
hgu133plus2
cdf
GSVA
AnnotationForge
updated 8.9 years ago by
James W. MacDonald
59k • written 8.9 years ago by
steven wink
▴ 90
0
votes
12
replies
3.1k
views
Have troubles with finding Annotations for Bovine and Rhesus\' platforms
Microarray
GO
oligo
AnnotationForge
Microarray
GO
oligo
AnnotationForge
9.3 years ago
James W. MacDonald
59k
47 results • Page
1 of 1
Recent ...
Replies
Comment: how to make a group to apply the data to CAMERA
by
Akira
• 0
Thank you so much for your quick answer!! I will look into them! I appreciate your kind support.
Comment: performing the differential binding in ChIP-seq
by
Bogdan
▴ 640
I am asking the question because we have two sets of ChIP-seq data for a histone mark (lets' say H3K4me1) that were generated with : <> an…
Comment: performing the differential binding in ChIP-seq
by
Bogdan
▴ 640
Thank you. Yes, DiffBind might be a good choice shall we have replicates per sample. Another choice is MA-norm2. Any other well-tested sug…
Comment: Error using read.ilmn and neqc
by
Gordon Smyth
45k
I edited the title of your question to be more specific.
Answer: Using limma to read Illumina HT-12 v4 data
by
Gordon Smyth
45k
It seems clear that you haven't exported the correct intensity data from GenomeStudio, and I think you recognize that yourself in your ques…
Votes
Answer: how to make a group to apply the data to CAMERA
Answer: how to make a group to apply the data to CAMERA
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
Awards
• All
Scholar
to
Gordon Smyth
45k
Popular Question
to
andrebolerbarros
▴ 10
Scholar
to
James W. MacDonald
59k
Scholar
to
Guido Hooiveld
★ 3.2k
Scholar
to
Kevin Blighe
3.5k
Locations
• All
United Kingdom,
just now
WEHI, Melbourne, Australia,
just now
Japan,
22 minutes ago
Palo Alto, CA, USA,
1 hour ago
United States,
2 hours ago
Traffic: 396 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6