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Comment: C: curious behavior from VariantAnnotation 1.5.36
12.9 years ago Valerie Obenchain ★ 6.8k
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Answer: A: find gene symbols immediately flanking before and after a SNP position
12.9 years ago Valerie Obenchain ★ 6.8k
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Answer: A: Extracting strand information from GenomicFeatures transcript db objects
12.9 years ago Valerie Obenchain ★ 6.8k
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1.1k
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Answer: A: DataFrame bug?
12.9 years ago Valerie Obenchain ★ 6.8k
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1.8k
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Comment: C: genome_intervals and GRange objects/HiTC package
12.9 years ago Valerie Obenchain ★ 6.8k
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2
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1.8k
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Answer: A: genome_intervals and GRange objects/HiTC package
12.9 years ago Valerie Obenchain ★ 6.8k
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3.1k
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Comment: C: Getting Introns Expression at a Per Gene Level
12.9 years ago Valerie Obenchain ★ 6.8k
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1.2k
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Answer: A: graph::subGraph() problem with node attributes
12.9 years ago Valerie Obenchain ★ 6.8k
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1
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3.1k
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Answer: A: Getting Introns Expression at a Per Gene Level
12.9 years ago Valerie Obenchain ★ 6.8k
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1.4k
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Comment: C: transcriptDb object not found when call locateVariants() in a function
12.9 years ago Valerie Obenchain ★ 6.8k
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1.3k
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Comment: C: VariantAnnotation: fine define Locating variants in and around genes
12.9 years ago Valerie Obenchain ★ 6.8k
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1.3k
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Answer: A: VariantAnnotation: fine define Locating variants in and around genes
12.9 years ago Valerie Obenchain ★ 6.8k
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0
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1.1k
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Answer: A: Getting Introns Expression at a Per Gene Level
12.9 years ago Valerie Obenchain ★ 6.8k
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0
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836
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Answer: A: unpackVcf not found
12.9 years ago Valerie Obenchain ★ 6.8k
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1
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1.1k
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Answer: A: Error when splitting an AAStringSet
12.9 years ago Valerie Obenchain ★ 6.8k
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1.7k
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Comment: C: VariantAnnotation - MatrixToSnpMatrix - only returns NAs
12.9 years ago Valerie Obenchain ★ 6.8k
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1.8k
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Comment: C: VCF predictCoding(...) providing inconsistent results?
12.9 years ago Valerie Obenchain ★ 6.8k
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1
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1.7k
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Answer: A: VariantAnnotation - MatrixToSnpMatrix - only returns NAs
12.9 years ago Valerie Obenchain ★ 6.8k
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1
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1.8k
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Comment: C: VCF predictCoding(...) providing inconsistent results?
12.9 years ago Valerie Obenchain ★ 6.8k
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1
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3.2k
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Answer: A: seqlevels in VCF objects
13.0 years ago Valerie Obenchain ★ 6.8k
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3
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3.3k
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Answer: A: merging VCF files
13.0 years ago Valerie Obenchain ★ 6.8k
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3.0k
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Comment: C: Pasilla data for "Counting with summarizeOverlaps/GenomicRanges"
13.0 years ago Valerie Obenchain ★ 6.8k
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3.0k
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Answer: A: Pasilla data for "Counting with summarizeOverlaps/GenomicRanges"
13.0 years ago Valerie Obenchain ★ 6.8k
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2.8k
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Answer: A: ComBat
13.0 years ago Valerie Obenchain ★ 6.8k
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948
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Answer: A: Empty Granges
13.0 years ago Valerie Obenchain ★ 6.8k
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2.8k
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Answer: A: ComBat
13.0 years ago Valerie Obenchain ★ 6.8k
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1
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3.4k
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Answer: A: flowCore: modifying exprs of a flowFrame
13.0 years ago Valerie Obenchain ★ 6.8k
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1
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2.3k
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Answer: A: scanVcf: FORMAT 'GT' not found
13.1 years ago Valerie Obenchain ★ 6.8k
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2.5k
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Comment: C: locateVariants - error with GRanges query?
13.1 years ago Valerie Obenchain ★ 6.8k
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804
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Why does a call to "unique" removes a DNAStringSet names?
updated 13.1 years ago by 16k • written 13.1 years ago by ★ 6.8k
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Answer: A: [VariantAnnotation] subsetting VCF objects
13.1 years ago Valerie Obenchain ★ 6.8k
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4.8k
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Comment: C: How to annotate genomic coordinates
13.1 years ago Valerie Obenchain ★ 6.8k
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1
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4.8k
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Comment: C: How to annotate genomic coordinates
13.1 years ago Valerie Obenchain ★ 6.8k
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4.8k
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Comment: C: How to annotate genomic coordinates
13.1 years ago Valerie Obenchain ★ 6.8k
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0
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4.8k
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Comment: C: How to annotate genomic coordinates
13.1 years ago Valerie Obenchain ★ 6.8k
0
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1
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4.8k
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Comment: C: How to annotate genomic coordinates
13.1 years ago Valerie Obenchain ★ 6.8k
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1.7k
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Rle factors, table and empty levels
IRanges IRanges
13.2 years ago Valerie Obenchain ★ 6.8k
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0
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1.2k
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Answer: A: A problem with getting promoter variants with the function locateVariants (from
13.2 years ago Valerie Obenchain ★ 6.8k
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0
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1.1k
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Comment: C: DNAStringSet_translate error in predictCoding()
13.2 years ago Valerie Obenchain ★ 6.8k
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1
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1.1k
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Answer: A: DNAStringSet_translate error in predictCoding()
13.2 years ago Valerie Obenchain ★ 6.8k
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0
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723
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Answer: A: Rle factors, table and empty levels
13.2 years ago Valerie Obenchain ★ 6.8k
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1
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1.9k
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Comment: C: Why is writeVcf() slow?
13.2 years ago Valerie Obenchain ★ 6.8k
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982
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Answer: A: GenomicRanges:::.filterMatchMatrix blows up nearest()
13.2 years ago Valerie Obenchain ★ 6.8k
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4.2k
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Comment: C: GenomicRanges::nearest (especially follow)
13.2 years ago Valerie Obenchain ★ 6.8k
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1
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1.9k
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Answer: A: Why is writeVcf() slow?
13.2 years ago Valerie Obenchain ★ 6.8k
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1
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4.2k
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Comment: C: GenomicRanges::nearest (especially follow)
13.2 years ago Valerie Obenchain ★ 6.8k
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1.7k
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Answer: A: filterBam using rname
13.2 years ago Valerie Obenchain ★ 6.8k
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4.2k
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Comment: C: GenomicRanges::nearest (especially follow)
13.2 years ago Valerie Obenchain ★ 6.8k
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2
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4.2k
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Comment: C: GenomicRanges::nearest (especially follow)
13.2 years ago Valerie Obenchain ★ 6.8k
0
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1
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4.2k
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Comment: C: GenomicRanges::nearest (especially follow)
13.2 years ago Valerie Obenchain ★ 6.8k
830 results • Page 13 of 17
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