User: Ou, Jianhong

gravatar for Ou, Jianhong
Ou, Jianhong1.1k
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Joined:
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Posts by Ou, Jianhong

<prev • 138 results • page 1 of 14 • next >
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Comment: C: How to understand Summary.xls in output of CRISPRseek
... Thank you Julie for the correction. Jianhong. From: "Julie Zhu [bioc]" <noreply@bioconductor.org> Reply-To: "reply+e0a20045+code@bioconductor.org" <reply+e0a20045+code@bioconductor.org> Date: Friday, June 8, 2018 at 10:05 AM To: "Jianhong Ou, Ph.D." <jianhong.ou@duke.edu> Subject ...
written 10 days ago by Ou, Jianhong1.1k
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How to understand Summary.xls in output of CRISPRseek
... Hi Julie, I want to double check that I correctly understand each column of summary.xls in output of CRISPRseek. Thank you. names : name of gRNA   forViewInUCSC : coordinates   extendedSequence : extended sequence of gRNA   gRNAefficacy : gRNA efficacy. The higher the better. see [https://ww ...
crisprseek written 10 days ago by Ou, Jianhong1.1k • updated 10 days ago by Julie Zhu3.8k
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Answer: A: ATACseqQC questions in R language
... Hi, Thank you for trying ATACseqQC package. In the vignette of ATACseqQC, we list the packages for human. The following is the code for preparing the packages of mouse: library(BiocInstaller) biocLite(c("ATACseqQC", "ChIPpeakAnno", "MotifDb", "GenomicAlignments", "BSgenome.Mmusculus.UCSC.mm10", " ...
written 12 days ago by Ou, Jianhong1.1k
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Answer: A: Row clustering featureAlignedHeatmap function (ChipPeakAnno package)
... The answer is no. You can only sort the feature.gr by the signals of the given samples. Default is the first sample. You can set sortBy with multiple samples. Jianhong ...
written 7 weeks ago by Ou, Jianhong1.1k
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Answer: A: Issue installing packages ATACseqQC and GO.db
... Could you try this:   biocLite(c("AnnotationDbi", "GO.db"), type="source")   also, please refer this post: https://support.bioconductor.org/p/53112/ ...
written 12 weeks ago by Ou, Jianhong1.1k
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Comment: C: how to combine multiple DelayedArray to a high dimension array
... Thank you! very helpful. ...
written 3 months ago by Ou, Jianhong1.1k
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how to combine multiple DelayedArray to a high dimension array
... What is the best way to combine two or more DelayedArray to a high dimension DelayedArray with low cost of memory? for example: a <- array(runif(1500000), dim=c(10000, 30, 5)) A <- DelayedArray(a) b <- array(runif(1500000), dim=c(10000, 30, 5)) B <- DelayedArray(b) DelayedArray(arrayc ...
delayedarray written 3 months ago by Ou, Jianhong1.1k • updated 3 months ago by Peter Hickey370
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Answer: A: motifStack importMatrix problem reading meme file to pcm
... Hi Imolla, Thank you for reporting this. This bug should be fixed in next building.  Jianhong.   ...
written 3 months ago by Ou, Jianhong1.1k
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Answer: A: integer overflow in ChIPpeakAnno assignChromosomeRegion
... Thank you for reporting the bug. I will fix it as soon as possible. Jianhong. ...
written 4 months ago by Ou, Jianhong1.1k
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Comment: C: ATACseqQC memory overflow issue
... Hi JL, Thank you for trying ATACseqQC. Please have a try to remove bamQC from you current script. And have a try. I'm working on bamQC to improve this issue. Jianhong. ...
written 4 months ago by Ou, Jianhong1.1k

Latest awards to Ou, Jianhong

Scholar 12 months ago, created an answer that has been accepted. For A: How to fix ChIPPeakAnno error in adding gene names to annotated peaks?
Popular Question 12 months ago, created a question with more than 1,000 views. For howto plot a figure like UCSC genome browser by Gviz
Scholar 12 months ago, created an answer that has been accepted. For A: Curious behaviour of ChIPpeakAnno
Scholar 12 months ago, created an answer that has been accepted. For A: org.Mm.eg.db mm9 version for ChIPpeakAnno getEnrichedGO function
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Annotation Database for ChIPpeakAnno
Scholar 12 months ago, created an answer that has been accepted. For A: Curious behaviour of ChIPpeakAnno
Scholar 14 months ago, created an answer that has been accepted. For A: Curious behaviour of ChIPpeakAnno
Scholar 2.3 years ago, created an answer that has been accepted. For A: Curious behaviour of ChIPpeakAnno
Teacher 2.3 years ago, created an answer with at least 3 up-votes. For A: How to fix ChIPPeakAnno error in adding gene names to annotated peaks?
Centurion 2.3 years ago, created 100 posts.
Scholar 2.6 years ago, created an answer that has been accepted. For A: org.Mm.eg.db mm9 version for ChIPpeakAnno getEnrichedGO function
Scholar 3.6 years ago, created an answer that has been accepted. For A: Curious behaviour of ChIPpeakAnno

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