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Comment: Comment: Too much data for Diffbind
13 months ago Ou, Jianhong ★ 1.3k
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1
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1.7k
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Comment: Comment: ATACseqQC shiftGAlignmentsList() problem
20 months ago Ou, Jianhong ★ 1.3k
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0
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973
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Comment: Comment: ATACseqTFEA - preparebindingSites() for whole genome?
21 months ago Ou, Jianhong ★ 1.3k
0
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1
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973
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Comment: Comment: ATACseqTFEA - preparebindingSites() for whole genome?
21 months ago Ou, Jianhong ★ 1.3k
0
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1
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1.7k
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Answer: Answer: ATACseqQC shiftGAlignmentsList() problem
23 months ago Ou, Jianhong ★ 1.3k
0
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0
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1.7k
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Comment: Comment: ATACseqQC shiftGAlignmentsList() problem
23 months ago Ou, Jianhong ★ 1.3k
0
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1
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1.7k
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Comment: Comment: ATACseqQC shiftGAlignmentsList() problem
23 months ago Ou, Jianhong ★ 1.3k
0
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1
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973
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Answer: Answer: ATACseqTFEA - preparebindingSites() for whole genome?
24 months ago Ou, Jianhong ★ 1.3k
0
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0
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618
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Comment: Comment: Incorrect display of Y-axis
24 months ago Ou, Jianhong ★ 1.3k
2
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2
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3.0k
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Answer: Answer: How to apply ChIPpeakAnno to your Granger object to annotate the peaks?
2.6 years ago Ou, Jianhong ★ 1.3k
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0
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1.0k
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Comment: Comment: Error in ATACseqQC bamQC analysis
2.8 years ago Ou, Jianhong ★ 1.3k
1
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0
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1.0k
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Answer: Answer: Interpretation of $vennCounts output "Others"
2.9 years ago Ou, Jianhong ★ 1.3k
0
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0
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1.1k
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Comment: Comment: AssignChromosomeRegion not working in Rstudio 4.2
3.5 years ago Ou, Jianhong ★ 1.3k
1
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1
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1.3k
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Comment: Comment: motifStack Plotting the correct data positions on x axis
3.7 years ago Ou, Jianhong ★ 1.3k
2
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1
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1.3k
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Answer: Answer: motifStack Plotting the correct data positions on x axis
3.7 years ago Ou, Jianhong ★ 1.3k
1
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0
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1.5k
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Comment: Comment: trackViewer assigning track colors
3.8 years ago Ou, Jianhong ★ 1.3k
0
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0
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3.7k
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Comment: Comment: Problem converting a bed file to granges using togranges chippeakanno
3.8 years ago Ou, Jianhong ★ 1.3k
0
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1
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2.2k
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Comment: Comment: TSSEscore function in ATACseqQC package
3.8 years ago Ou, Jianhong ★ 1.3k
0
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1
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2.2k
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Comment: Comment: TSSEscore function in ATACseqQC package
3.8 years ago Ou, Jianhong ★ 1.3k
1
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2
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2.2k
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Comment: Comment: TSSEscore function in ATACseqQC package
3.8 years ago Ou, Jianhong ★ 1.3k
0
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0
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2.8k
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Answer: Answer: Error in .order_seqlevels(chrom_sizes[, "chrom"])
4.0 years ago Ou, Jianhong ★ 1.3k
1
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1
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2.1k
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Answer: Answer: trackViewer peak visualization
4.1 years ago Ou, Jianhong ★ 1.3k
0
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1
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2.8k
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Answer: Answer: trackViewer bigWig smoothing
4.1 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.5k
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Answer: Answer: trackViewer font
4.1 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.0k
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Hard coding in DiffBind DBA.R line 968
DiffBind
updated 4.4 years ago by ★ 5.2k • written 4.4 years ago by ★ 1.3k
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5.5k
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Comment: Comment: No peak corresponding to the nucleosome-free regions is observed in Fragment siz
4.5 years ago Ou, Jianhong ★ 1.3k
0
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1
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5.5k
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Comment: Comment: No peak corresponding to the nucleosome-free regions is observed in Fragment siz
4.5 years ago Ou, Jianhong ★ 1.3k
1
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1
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1.5k
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Answer: Answer: ribosomeProfilingQC - countReads function - is it possible to consider library
4.7 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.5k
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Comment: Comment: ribosomeProfilingQC - countReads function - is it possible to consider library
4.7 years ago Ou, Jianhong ★ 1.3k
0
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0
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1.2k
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Comment: Comment: trackViewer: File format detection
4.9 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.2k
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Answer: Answer: trackViewer: File format detection
4.9 years ago Ou, Jianhong ★ 1.3k
0
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1
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1.7k
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Comment: C: How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQ
5.2 years ago Ou, Jianhong ★ 1.3k
0
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1
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2.9k
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Answer: A: ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
5.2 years ago Ou, Jianhong ★ 1.3k
1
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0
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14k
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Answer: A: Interpreting TSS Enrichment Score Summary
5.2 years ago Ou, Jianhong ★ 1.3k
2
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1
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1.2k
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Comment: C: how to suppress makeVennDiagram plot
5.3 years ago Ou, Jianhong ★ 1.3k
0
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0
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1.5k
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Comment: C: Subsampling when adjusting the read start sites in the ATACseqQC guide
5.3 years ago Ou, Jianhong ★ 1.3k
1
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2
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1.5k
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Comment: C: Subsampling when adjusting the read start sites in the ATACseqQC guide
5.3 years ago Ou, Jianhong ★ 1.3k
0
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0
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2.2k
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Comment: C: ATACSeqQC - error when splitting files using mm10
5.4 years ago Ou, Jianhong ★ 1.3k
0
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1
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2.2k
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Comment: C: ATACSeqQC - error when splitting files using mm10
5.5 years ago Ou, Jianhong ★ 1.3k
0
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1
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2.2k
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Comment: C: ATACSeqQC - error when splitting files using mm10
5.5 years ago Ou, Jianhong ★ 1.3k
0
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0
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3.4k
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Comment: C: ATAC-QC shiftGAlignmentsList function
5.6 years ago Ou, Jianhong ★ 1.3k
0
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0
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733
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Comment: C: ATACseqQC and Rsamtools scanBam
5.6 years ago Ou, Jianhong ★ 1.3k
1
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0
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688
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Answer: C: Virus found in GeneNetworkBuilder_1.28.1.tar.gz
5.8 years ago Ou, Jianhong ★ 1.3k
0
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0
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1.2k
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Comment: C: TrackViewer Vignette Err: attr must be a slot name of xscale object
5.9 years ago Ou, Jianhong ★ 1.3k
0
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0
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1.7k
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Comment: C: trackViewer: how to make lolliplots for methylation data
6.0 years ago Ou, Jianhong ★ 1.3k
1
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1
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1.7k
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Comment: C: trackViewer: how to make lolliplots for methylation data
6.0 years ago Ou, Jianhong ★ 1.3k
0
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0
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987
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Answer: A: Can I use trackViewer to generate methylation lolliops with my own gene models a
6.0 years ago Ou, Jianhong ★ 1.3k
0
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1
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2.8k
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Answer: A: Error in running ATACseqQC
6.1 years ago Ou, Jianhong ★ 1.3k
0
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0
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2.4k
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Comment: C: ATACseqQC installation fails at shiny step
6.2 years ago Ou, Jianhong ★ 1.3k
0
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1
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2.4k
views
Comment: C: ATACseqQC installation fails at shiny step
6.2 years ago Ou, Jianhong ★ 1.3k
228 results • Page 1 of 5
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