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Dose-Response: Regressiion and ANOVA
Regression DOSE Regression DOSE
updated 20.8 years ago by ▴ 360 • written 20.8 years ago by ▴ 620
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normalizaton between studies
Normalization vsn DOSE Normalization vsn DOSE
updated 20.9 years ago by ▴ 10 • written 20.9 years ago by ▴ 620
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1.6k
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unbalanced design
limma DOSE limma DOSE
updated 20.9 years ago by 53k • written 20.9 years ago by ▴ 620
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normalisation or analysis with batch effects
Cancer Cancer
20.9 years ago Arne.Muller@aventis.com ▴ 620
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Answer: A: Installing Packages from Bioconductor: Error
20.9 years ago Arne.Muller@aventis.com ▴ 620
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924
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excluding absent genes - again
21.1 years ago Arne.Muller@aventis.com ▴ 620
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Answer: A: Normalising divergent samples.
21.1 years ago Arne.Muller@aventis.com ▴ 620
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1.3k
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Friedman test
DOSE DOSE
21.2 years ago Arne.Muller@aventis.com ▴ 620
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10
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5.3k
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GOStat and multiple testing
GO GOstats GO GOstats
updated 21.2 years ago by ▴ 810 • written 21.2 years ago by ▴ 620
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1.1k
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correlation image and tickmarks
affy affy
21.3 years ago Arne.Muller@aventis.com ▴ 620
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959
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MAS5 and Loess normalization
Normalization affy Normalization affy
21.3 years ago Arne.Muller@aventis.com ▴ 620
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4
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1.6k
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heatmaps and pearson correlation
21.3 years ago Arne.Muller@aventis.com ▴ 620
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1
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1.6k
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Answer: A: heatmaps and pearson correlation
21.3 years ago Arne.Muller@aventis.com ▴ 620
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1
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1.0k
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Affy: present genes and anova
updated 21.4 years ago by ★ 6.0k • written 21.4 years ago by ▴ 620
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1.7k
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Anova with ratios
affy DOSE affy DOSE
21.4 years ago Arne.Muller@aventis.com ▴ 620
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1.4k
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Answer: A: Linear modeling for affy experiment
21.4 years ago Arne.Muller@aventis.com ▴ 620
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3
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1.4k
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negative expression values
updated 21.4 years ago by ★ 3.4k • written 21.4 years ago by ▴ 620
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1.4k
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Answer: A: negative expression values
21.4 years ago Arne.Muller@aventis.com ▴ 620
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1
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1.1k
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SparseM not found
graph graph
updated 21.4 years ago by ★ 3.9k • written 21.4 years ago by ▴ 620
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1
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980
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Error loading GOstats
GOstats GOstats
updated 21.4 years ago by ★ 3.9k • written 21.4 years ago by ▴ 620
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1.3k
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Answer: A: Drosophila GeneChip analysis
21.5 years ago Arne.Muller@aventis.com ▴ 620
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1.3k
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Answer: A: Drosophila GeneChip analysis
21.5 years ago Arne.Muller@aventis.com ▴ 620
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1.3k
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Probe level analysis
probe limma DOSE probe limma DOSE
21.5 years ago Arne.Muller@aventis.com ▴ 620
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1.3k
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Answer: A: comparing data frames
21.5 years ago Arne.Muller@aventis.com ▴ 620
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798
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RMA on PM only
21.5 years ago Arne.Muller@aventis.com ▴ 620
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1.0k
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A single linear model for all
DOSE DOSE
21.5 years ago Arne.Muller@aventis.com ▴ 620
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1.0k
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Answer: A: RE: venn diagram
21.5 years ago Arne.Muller@aventis.com ▴ 620
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1.8k
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Answer: A: venn diagram
21.5 years ago Arne.Muller@aventis.com ▴ 620
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2
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2.8k
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Answer: A: venn diagram in R
21.5 years ago Arne.Muller@aventis.com ▴ 620
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959
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hierarchical clustering of chips
Visualization Clustering Visualization Clustering
21.5 years ago Arne.Muller@aventis.com ▴ 620
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1
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1.0k
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when to call pmcorrect in affy
Normalization probe Normalization probe
updated 21.5 years ago by ★ 1.1k • written 21.5 years ago by ▴ 620
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1
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1.2k
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programming problem: running many ANOVAs
DOSE DOSE
updated 21.5 years ago by ▴ 130 • written 21.5 years ago by ▴ 620
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3
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1.6k
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limma and nested factors
probe affy limma probe affy limma
21.6 years ago Arne.Muller@aventis.com ▴ 620
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1.6k
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Answer: A: limma and nested factors
21.6 years ago Arne.Muller@aventis.com ▴ 620
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0
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1.5k
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robust linear model in anovas
DOSE DOSE
21.6 years ago Arne.Muller@aventis.com ▴ 620
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0
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1.4k
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Answer: A: memory usage ReadAffy() and probe level information
21.6 years ago Arne.Muller@aventis.com ▴ 620
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1
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1.4k
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double normalization
updated 21.6 years ago by ★ 6.0k • written 21.6 years ago by ▴ 620
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3.1k
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Answer: A: how deal with multiplicate affy probes?
21.6 years ago Arne.Muller@aventis.com ▴ 620
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0
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1.0k
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gcrma and justRMA
vsn gcrma vsn gcrma
21.6 years ago Arne.Muller@aventis.com ▴ 620
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3.1k
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Answer: A: how deal with multiplicate affy probes?
21.6 years ago Arne.Muller@aventis.com ▴ 620
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0
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1.4k
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Answer: A: justGCRMA normalisation options?
21.6 years ago Arne.Muller@aventis.com ▴ 620
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0
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2.0k
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Answer: A: Quantile normalization vs. data distributions
21.6 years ago Arne.Muller@aventis.com ▴ 620
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3
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1.8k
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utils required for EBarrays
EBarrays EBarrays
updated 21.6 years ago by ▴ 680 • written 21.6 years ago by ▴ 620
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1.5k
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Answer: A: when do linear models work?
21.7 years ago Arne.Muller@aventis.com ▴ 620
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3
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1.5k
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when do linear models work?
DOSE DOSE
21.7 years ago Arne.Muller@aventis.com ▴ 620
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1
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2.4k
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Answer: A: select top genes based on p-value in limma
21.7 years ago Arne.Muller@aventis.com ▴ 620
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4
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2.6k
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RMA and quantile normalisation
probe probe
updated 21.7 years ago by ▴ 50 • written 21.7 years ago by ▴ 620
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2
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2.6k
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Answer: A: RMA and quantile normalisation
21.7 years ago Arne.Muller@aventis.com ▴ 620
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0
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1.3k
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AffyPLM
affyPLM affyPLM
21.7 years ago Arne.Muller@aventis.com ▴ 620
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0
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1.1k
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Quantile Normalization on mice data
Normalization Clustering probe affyPLM Normalization Clustering probe affyPLM
21.7 years ago Arne.Muller@aventis.com ▴ 620
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