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Comment: Comment: DiffBind - observation that the default union overlap is actually a gap of 1 bp
9 months ago Ian D. ▴ 70
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1.9k
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Comment: Comment: More regions in union when increasing DBA$config$mergeOverlap
13 months ago Ian D. ▴ 70
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1
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718
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DiffBind - observation that the default union overlap is actually a gap of 1 bp
DiffBind
15 months ago • updated 9 months ago Ian D. ▴ 70
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1.9k
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Comment: Comment: More regions in union when increasing DBA$config$mergeOverlap
15 months ago Ian D. ▴ 70
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0
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1.9k
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Comment: Comment: More regions in union when increasing DBA$config$mergeOverlap
15 months ago Ian D. ▴ 70
0
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0
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1.9k
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Comment: Comment: More regions in union when increasing DBA$config$mergeOverlap
17 months ago Ian D. ▴ 70
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0
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1.9k
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Comment: Comment: More regions in union when increasing DBA$config$mergeOverlap
18 months ago Ian D. ▴ 70
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0
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1.9k
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Comment: Comment: More regions in union when increasing DBA$config$mergeOverlap
18 months ago Ian D. ▴ 70
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0
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466
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How to create consensus peak sets for each group to use in DiffBind?
DiffBind
18 months ago Ian D. ▴ 70
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6
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1.9k
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Comment: Comment: More regions in union when increasing DBA$config$mergeOverlap
18 months ago Ian D. ▴ 70
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9
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1.9k
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More regions in union when increasing DBA$config$mergeOverlap
DiffBind
18 months ago • updated 13 months ago Ian D. ▴ 70
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1
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1.1k
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DESeq - ChIP-seq (including background reads)
DESeq DESeq
updated 13.8 years ago by ▴ 70 • written 13.8 years ago by ▴ 70
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1
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1.1k
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htSeqTools - filtered reads > BED?
IRanges htSeqTools IRanges htSeqTools
updated 13.8 years ago by ★ 11k • written 13.8 years ago by ▴ 70
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2
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1.6k
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htSeqTools - naming RangedData objects?
htSeqTools ASSIGN htSeqTools ASSIGN
updated 13.8 years ago by ★ 11k • written 13.8 years ago by ▴ 70
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1.7k
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Comment: C: Using DESeq with ChIP-seq data - all or non-redundant reads?
14.1 years ago Ian D. ▴ 70
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3
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1.7k
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Using DESeq with ChIP-seq data - all or non-redundant reads?
DESeq DESeq
updated 14.1 years ago by ▴ 310 • written 14.1 years ago by ▴ 70
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1
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2.7k
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Comment: C: Using DESeq with ChIP-seq data
14.3 years ago Ian D. ▴ 70
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4
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2.7k
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Using DESeq with ChIP-seq data
DESeq DESeq
updated 14.3 years ago by ★ 3.8k • written 14.3 years ago by ▴ 70
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