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Comment: Comment: DiffBind - observation that the default union overlap is actually a gap of 1 bp
10 months ago Ian D. ▴ 70
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Comment: Comment: More regions in union when increasing DBA$config$mergeOverlap
14 months ago Ian D. ▴ 70
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1
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749
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DiffBind - observation that the default union overlap is actually a gap of 1 bp
DiffBind
16 months ago • updated 10 months ago Ian D. ▴ 70
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2.0k
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Comment: Comment: More regions in union when increasing DBA$config$mergeOverlap
16 months ago Ian D. ▴ 70
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0
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2.0k
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Comment: Comment: More regions in union when increasing DBA$config$mergeOverlap
17 months ago Ian D. ▴ 70
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0
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2.0k
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Comment: Comment: More regions in union when increasing DBA$config$mergeOverlap
18 months ago Ian D. ▴ 70
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0
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2.0k
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Comment: Comment: More regions in union when increasing DBA$config$mergeOverlap
19 months ago Ian D. ▴ 70
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2.0k
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Comment: Comment: More regions in union when increasing DBA$config$mergeOverlap
20 months ago Ian D. ▴ 70
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0
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486
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How to create consensus peak sets for each group to use in DiffBind?
DiffBind
20 months ago Ian D. ▴ 70
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6
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2.0k
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Comment: Comment: More regions in union when increasing DBA$config$mergeOverlap
20 months ago Ian D. ▴ 70
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9
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2.0k
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More regions in union when increasing DBA$config$mergeOverlap
DiffBind
20 months ago • updated 14 months ago Ian D. ▴ 70
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1
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1.1k
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DESeq - ChIP-seq (including background reads)
DESeq DESeq
updated 13.9 years ago by ▴ 70 • written 13.9 years ago by ▴ 70
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1
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1.1k
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htSeqTools - filtered reads > BED?
IRanges htSeqTools IRanges htSeqTools
updated 13.9 years ago by ★ 11k • written 13.9 years ago by ▴ 70
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2
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1.6k
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htSeqTools - naming RangedData objects?
htSeqTools ASSIGN htSeqTools ASSIGN
updated 14.0 years ago by ★ 11k • written 14.0 years ago by ▴ 70
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1.7k
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Comment: C: Using DESeq with ChIP-seq data - all or non-redundant reads?
14.2 years ago Ian D. ▴ 70
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3
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1.7k
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Using DESeq with ChIP-seq data - all or non-redundant reads?
DESeq DESeq
updated 14.2 years ago by ▴ 310 • written 14.2 years ago by ▴ 70
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1
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2.8k
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Comment: C: Using DESeq with ChIP-seq data
14.5 years ago Ian D. ▴ 70
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4
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2.8k
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Using DESeq with ChIP-seq data
DESeq DESeq
updated 14.5 years ago by ★ 3.8k • written 14.5 years ago by ▴ 70
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