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Answer: A: edgeR: Problem with subsetting a DGEList in latest package version
9.7 years ago Mark Robinson ▴ 880
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Answer: A: "True" normalization factors in edgeR
9.7 years ago Mark Robinson ▴ 880
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Answer: A: "True" normalization factors in edgeR
9.7 years ago Mark Robinson ▴ 880
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Answer: A: differential expression- edgeR
10.4 years ago Mark Robinson ▴ 880
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Answer: A: differential expression- edgeR
10.4 years ago Mark Robinson ▴ 880
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Answer: A: edgeR glmFit
10.4 years ago Mark Robinson ▴ 880
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Answer: A: edgeR glmFit
10.4 years ago Mark Robinson ▴ 880
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Answer: A: calcNormFactors gives NaN normalization values- Please Help!
10.4 years ago Mark Robinson ▴ 880
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6.0k
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Answer: A: edgeR glmFit
10.4 years ago Mark Robinson ▴ 880
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8.2k
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Answer: A: edgeR DGEList
10.4 years ago Mark Robinson ▴ 880
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8.2k
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Answer: A: edgeR DGEList
10.4 years ago Mark Robinson ▴ 880
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Answer: A: edgeR - 3-dimensional Multidimensional scaling
10.4 years ago Mark Robinson ▴ 880
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Answer: A: confused with edgeR: multiple groups vs one control
10.5 years ago Mark Robinson ▴ 880
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1.6k
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Answer: A: Too many DEG with edgeR output?
10.5 years ago Mark Robinson ▴ 880
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4.5k
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Answer: A: Bioconductor: CPM and log(CPM) values in EdgeR does not match
10.8 years ago Mark Robinson ▴ 880
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2.2k
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Answer: A: edgeR dispersion value
10.8 years ago Mark Robinson ▴ 880
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1.7k
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Answer: A: edgeR: very low p-value and very high variance within the group of replicates
10.9 years ago Mark Robinson ▴ 880
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2.0k
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Answer: A: edgeR - one way ANOVA, coef parameter interpretation in glmLRT()
10.9 years ago Mark Robinson ▴ 880
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1.4k
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Answer: A: Problems with edgeR package
10.9 years ago Mark Robinson ▴ 880
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3.7k
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Answer: A: EdgeR questions about exactTest and plotMDS function
10.9 years ago Mark Robinson ▴ 880
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1.4k
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Answer: A: edgeR Warings
11.1 years ago Mark Robinson ▴ 880
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4.6k
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Answer: A: edgeR: counts or pseudo.counts?
11.2 years ago Mark Robinson ▴ 880
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2.8k
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Answer: A: TMM Normalization without replicate
11.2 years ago Mark Robinson ▴ 880
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2.7k
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Answer: A: edgeR continuous variables
11.3 years ago Mark Robinson ▴ 880
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891
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Answer: A: EdgeR :column sums of counts or library size?
11.5 years ago Mark Robinson ▴ 880
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4.2k
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Answer: A: edgeR/DESeq for ChIP-seq analysis
11.5 years ago Mark Robinson ▴ 880
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4.3k
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Answer: A: Is there any prejudice whether to use edgeR or DESeq for differential expression
11.5 years ago Mark Robinson ▴ 880
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916
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Answer: A: DGEList and exactTest function in edgeR package
11.5 years ago Mark Robinson ▴ 880
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2.6k
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Answer: A: Using edgeR with no replicates, estimating dispersion and the pseudo.alt slot
11.5 years ago Mark Robinson ▴ 880
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811
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Answer: A: minimal number of features tested in edgeR
11.5 years ago Mark Robinson ▴ 880
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1.0k
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Answer: A: Fisher Information Matrix in edgeR
11.6 years ago Mark Robinson ▴ 880
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10.0k
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Answer: A: How can I get the normalized read counts from TMM?
11.6 years ago Mark Robinson ▴ 880
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1.8k
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Answer: A: EdgeR for proteomics
11.6 years ago Mark Robinson ▴ 880
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1.7k
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Answer: A: Data filtering
11.6 years ago Mark Robinson ▴ 880
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1.2k
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Answer: A: EdgeR condition-specific dispersion
11.6 years ago Mark Robinson ▴ 880
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968
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Answer: A: how to get normalized matrix
11.6 years ago Mark Robinson ▴ 880
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967
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Answer: A: edgeR - no sequences are differentially expressed
11.6 years ago Mark Robinson ▴ 880
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1.9k
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Answer: A: Is normalization in edgeR required for small RNA sequencing data?
11.6 years ago Mark Robinson ▴ 880
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1.7k
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Answer: A: Differential expression without replicates
11.7 years ago Mark Robinson ▴ 880
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2.4k
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Answer: A: EdgeR and libsize normalization
11.8 years ago Mark Robinson ▴ 880
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1.0k
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Answer: A: Can the normalization factors be too far apart in EdgeR analyses?
11.8 years ago Mark Robinson ▴ 880
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1.7k
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Answer: A: edgeR norm.factors NaN
11.8 years ago Mark Robinson ▴ 880
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12k
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Answer: A: how to get normalized counts from edgeR
11.8 years ago Mark Robinson ▴ 880
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588
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Answer: A: report a possible buy in edgeR
11.8 years ago Mark Robinson ▴ 880
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1.8k
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Answer: A: design matrix edge R pairwise comparison at different time points after infectio
11.9 years ago Mark Robinson ▴ 880
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2.1k
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Answer: A: Newbie methylation and stats question
11.9 years ago Mark Robinson ▴ 880
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3.5k
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Answer: A: edgeR : input and design matrix help
12.0 years ago Mark Robinson ▴ 880
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1.0k
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Answer: A: EdgeR exactTest - treatment names determine sign of fold change
12.0 years ago Mark Robinson ▴ 880
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838
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Answer: A: TMM factors
12.0 years ago Mark Robinson ▴ 880
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1
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2.6k
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Answer: A: Few errors with edgeR
12.1 years ago Mark Robinson ▴ 880
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