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Answer: Answer: Issue loading and downloading Bioconductor 3.22 packages after update
5 days ago James W. MacDonald 68k
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363
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Answer: Answer: Bulk RNAseq analysis for
19 days ago James W. MacDonald 68k
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196
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Answer: Answer: DESeq2 for 16S rRNA Analysis
4 weeks ago James W. MacDonald 68k
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538
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Answer: Answer: When to use edgeR or limma
6 weeks ago James W. MacDonald 68k
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971
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Comment: Comment: Joining different datasets and analyzing using the group-specific condition effe
6 weeks ago James W. MacDonald 68k
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971
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Comment: Comment: Joining different datasets and analyzing using the group-specific condition effe
6 weeks ago James W. MacDonald 68k
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362
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Answer: Answer: problem reading bam files into nucleR
12 weeks ago James W. MacDonald 68k
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1
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386
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Comment: Comment: Getting a large intercept with DESeq2
3 months ago James W. MacDonald 68k
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1
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386
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Answer: Answer: Getting a large intercept with DESeq2
3 months ago James W. MacDonald 68k
2
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799
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Comment: Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
3 months ago James W. MacDonald 68k
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1
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223
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Answer: Answer: Suppress warning in RHDF5 write
3 months ago James W. MacDonald 68k
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346
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Answer: Answer: Integration: Paired-end vs healthy single-end from a different source
3 months ago James W. MacDonald 68k
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5.0k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
4 months ago James W. MacDonald 68k
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1
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5.0k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
4 months ago James W. MacDonald 68k
0
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1
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5.0k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
4 months ago James W. MacDonald 68k
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1
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5.0k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
4 months ago James W. MacDonald 68k
0
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1
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411
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Answer: Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
4 months ago James W. MacDonald 68k
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411
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Comment: Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
4 months ago James W. MacDonald 68k
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234
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Answer: Answer: Gatins Set error
4 months ago James W. MacDonald 68k
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890
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Comment: Comment: GO.db and others package Download failure
5 months ago James W. MacDonald 68k
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1
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890
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Comment: Comment: GO.db and others package Download failure
5 months ago James W. MacDonald 68k
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1
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890
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Comment: Comment: GO.db and others package Download failure
5 months ago James W. MacDonald 68k
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1
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890
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Answer: Answer: GO.db and others package Download failure
5 months ago James W. MacDonald 68k
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1.8k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
5 months ago James W. MacDonald 68k
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1.8k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
5 months ago James W. MacDonald 68k
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303
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Answer: Answer: Differential motif analysis
5 months ago James W. MacDonald 68k
1
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538
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Comment: Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
5 months ago James W. MacDonald 68k
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1
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630
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Comment: Comment: DESeq2 interactions
5 months ago James W. MacDonald 68k
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1
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357
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Answer: Answer: readBam vs read_bam_insert_metrics
5 months ago James W. MacDonald 68k
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1
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538
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Answer: Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
5 months ago James W. MacDonald 68k
1
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2
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460
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Answer: Answer: ROAST compare results with complex design
5 months ago James W. MacDonald 68k
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1.3k
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Comment: Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
6 months ago James W. MacDonald 68k
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1
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1.3k
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Comment: Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
6 months ago James W. MacDonald 68k
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346
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Answer: Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel
6 months ago James W. MacDonald 68k
2
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1
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1.3k
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Answer: Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
6 months ago James W. MacDonald 68k
0
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0
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14k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
6 months ago James W. MacDonald 68k
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14k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
6 months ago James W. MacDonald 68k
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1
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2.6k
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
6 months ago James W. MacDonald 68k
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1
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884
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
6 months ago James W. MacDonald 68k
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1
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884
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
6 months ago James W. MacDonald 68k
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1
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884
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
6 months ago James W. MacDonald 68k
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1
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884
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
6 months ago James W. MacDonald 68k
0
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1
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884
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Answer: Answer: Getting way too many DEGs with LRT for time-series RNA-seq!
6 months ago James W. MacDonald 68k
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0
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494
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Comment: Comment: Create consensusMatrix for codon bases
6 months ago James W. MacDonald 68k
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1.0k
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
6 months ago James W. MacDonald 68k
1
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1
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336
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Answer: Answer: The default value of 'abundanceCol'
6 months ago James W. MacDonald 68k
1
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1
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1.0k
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
7 months ago James W. MacDonald 68k
2
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1
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1.0k
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Answer: Answer: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
7 months ago James W. MacDonald 68k
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1
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1.0k
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
7 months ago James W. MacDonald 68k
0
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0
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277
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Answer: Answer: muffz.plot2
7 months ago James W. MacDonald 68k
8,876 results • Page 1 of 178
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