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Answer: Answer: Integration: Paired-end vs healthy single-end from a different source
2 days ago James W. MacDonald 68k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
12 days ago James W. MacDonald 68k
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4.5k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
16 days ago James W. MacDonald 68k
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1
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4.5k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
16 days ago James W. MacDonald 68k
0
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1
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4.5k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
16 days ago James W. MacDonald 68k
0
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228
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Answer: Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
22 days ago James W. MacDonald 68k
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228
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Comment: Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
22 days ago James W. MacDonald 68k
0
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110
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Answer: Answer: Gatins Set error
4 weeks ago James W. MacDonald 68k
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406
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Comment: Comment: GO.db and others package Download failure
6 weeks ago James W. MacDonald 68k
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1
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406
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Comment: Comment: GO.db and others package Download failure
6 weeks ago James W. MacDonald 68k
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406
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Comment: Comment: GO.db and others package Download failure
6 weeks ago James W. MacDonald 68k
0
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1
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406
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Answer: Answer: GO.db and others package Download failure
7 weeks ago James W. MacDonald 68k
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1.1k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
7 weeks ago James W. MacDonald 68k
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1
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1.1k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
7 weeks ago James W. MacDonald 68k
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122
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Answer: Answer: Differential motif analysis
7 weeks ago James W. MacDonald 68k
1
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359
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Comment: Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
7 weeks ago James W. MacDonald 68k
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1
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394
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Comment: Comment: DESeq2 interactions
7 weeks ago James W. MacDonald 68k
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227
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Answer: Answer: readBam vs read_bam_insert_metrics
7 weeks ago James W. MacDonald 68k
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1
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359
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Answer: Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
7 weeks ago James W. MacDonald 68k
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2
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331
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Answer: Answer: ROAST compare results with complex design
9 weeks ago James W. MacDonald 68k
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1.0k
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Comment: Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
9 weeks ago James W. MacDonald 68k
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1
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1.0k
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Comment: Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
9 weeks ago James W. MacDonald 68k
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209
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Answer: Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel
9 weeks ago James W. MacDonald 68k
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1.0k
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Answer: Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
10 weeks ago James W. MacDonald 68k
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13k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
10 weeks ago James W. MacDonald 68k
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13k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
10 weeks ago James W. MacDonald 68k
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1.1k
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
10 weeks ago James W. MacDonald 68k
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578
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
11 weeks ago James W. MacDonald 68k
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1
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578
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
11 weeks ago James W. MacDonald 68k
0
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1
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578
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
11 weeks ago James W. MacDonald 68k
0
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1
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578
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
11 weeks ago James W. MacDonald 68k
0
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1
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578
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Answer: Answer: Getting way too many DEGs with LRT for time-series RNA-seq!
11 weeks ago James W. MacDonald 68k
0
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0
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243
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Comment: Comment: Create consensusMatrix for codon bases
12 weeks ago James W. MacDonald 68k
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674
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
12 weeks ago James W. MacDonald 68k
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1
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240
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Answer: Answer: The default value of 'abundanceCol'
12 weeks ago James W. MacDonald 68k
1
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1
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674
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
3 months ago James W. MacDonald 68k
2
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1
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674
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Answer: Answer: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
3 months ago James W. MacDonald 68k
0
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1
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674
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
3 months ago James W. MacDonald 68k
0
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0
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184
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Answer: Answer: muffz.plot2
3 months ago James W. MacDonald 68k
0
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0
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346
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Comment: Comment: Feedback needed on new user-friendly BED file tool
3 months ago James W. MacDonald 68k
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2
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532
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Answer: Answer: DEP R-package run_app ("TMT") spits this error: "Error: 'imputeMethods' is not a
3 months ago James W. MacDonald 68k
0
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0
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252
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Comment: Comment: ORFik: spliced 5utr regions
3 months ago James W. MacDonald 68k
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0
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581
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Answer: Answer: MEDIPS.meth gives table with NA rpkm values
3 months ago James W. MacDonald 68k
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615
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Answer: Answer: cytolib uses outdated boost call
3 months ago James W. MacDonald 68k
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938
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Comment: Comment: Install old version of DESeq2
3 months ago James W. MacDonald 68k
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501
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Answer: Answer: discrepancy in IDs from file and tx2gene (IDs don't match)
3 months ago James W. MacDonald 68k
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1.7k
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Answer: Answer: RNA-seq: TPM batch effect correction
4 months ago James W. MacDonald 68k
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5.1k
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Comment: Comment: Analysis of clusters of a heatmap with enrichGO of clusterProfiler: choice fo t
4 months ago James W. MacDonald 68k
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5.1k
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Answer: Answer: Analysis of clusters of a heatmap with enrichGO of clusterProfiler: choice fo t
4 months ago James W. MacDonald 68k
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0
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1.1k
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Answer: Answer: TopGO question
4 months ago James W. MacDonald 68k
8,865 results • Page 1 of 178
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