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Answer: Answer: discrepancy in IDs from file and tx2gene (IDs don't match)
5 months ago James W. MacDonald 68k
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Answer: Answer: RNA-seq: TPM batch effect correction
6 months ago James W. MacDonald 68k
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5.3k
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Comment: Comment: Analysis of clusters of a heatmap with enrichGO of clusterProfiler: choice fo t
6 months ago James W. MacDonald 68k
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5.3k
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Answer: Answer: Analysis of clusters of a heatmap with enrichGO of clusterProfiler: choice fo t
6 months ago James W. MacDonald 68k
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1.2k
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Answer: Answer: TopGO question
6 months ago James W. MacDonald 68k
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1.1k
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Answer: Answer: Starting with a clean bioconductor rstudio container
6 months ago James W. MacDonald 68k
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1.2k
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Comment: Comment: TopGO question
6 months ago James W. MacDonald 68k
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1.2k
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Answer: Answer: error from library(IlluminaHumanMethylationMSAmanifest)
6 months ago James W. MacDonald 68k
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1
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939
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Comment: Comment: Position of the legend object in complexHeatmap
6 months ago James W. MacDonald 68k
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939
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Answer: Answer: Position of the legend object in complexHeatmap
6 months ago James W. MacDonald 68k
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478
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Answer: Answer: lncRNA functional annotation package
7 months ago James W. MacDonald 68k
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691
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Answer: Answer: Biomart server error
7 months ago James W. MacDonald 68k
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2.1k
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Comment: Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
7 months ago James W. MacDonald 68k
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1.4k
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Comment: Comment: Heatmap of rnaseq data with z-score scale
7 months ago James W. MacDonald 68k
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1.4k
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Answer: Answer: Heatmap of rnaseq data with z-score scale
7 months ago James W. MacDonald 68k
0
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0
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1.1k
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Answer: Answer: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin
7 months ago James W. MacDonald 68k
2
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1
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2.1k
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Answer: Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
7 months ago James W. MacDonald 68k
1
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0
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672
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Comment: Comment: AnnotationHub/ExperimentHub resources backup
7 months ago James W. MacDonald 68k
2
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1
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672
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Answer: Answer: AnnotationHub/ExperimentHub resources backup
7 months ago James W. MacDonald 68k
3
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672
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Answer: Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change
7 months ago James W. MacDonald 68k
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1.5k
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Comment: Comment: Heatmap of a transformed deseq object with pheatmap
7 months ago James W. MacDonald 68k
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1
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1.5k
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Answer: Answer: Heatmap of a transformed deseq object with pheatmap
7 months ago James W. MacDonald 68k
0
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1
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1.5k
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Comment: Comment: Heatmap of a transformed deseq object with pheatmap
7 months ago James W. MacDonald 68k
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415
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Answer: Answer: Error in readCodelinkSet function
7 months ago James W. MacDonald 68k
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2
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5.9k
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Comment: Comment: How to load scRNA-seq data from GEO
7 months ago James W. MacDonald 68k
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0
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509
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Answer: Answer: Filtering out non-variable probes from EPICv2 matrix
7 months ago James W. MacDonald 68k
2
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3.4k
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Answer: Answer: limma correction for tumor purity
7 months ago James W. MacDonald 68k
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3
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5.9k
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Answer: Answer: How to load scRNA-seq data from GEO
7 months ago James W. MacDonald 68k
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1.8k
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Comment: Comment: Unable to install a forged BSgenome package
7 months ago James W. MacDonald 68k
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1
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1.8k
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Comment: Comment: Unable to install a forged BSgenome package
8 months ago James W. MacDonald 68k
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1
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1.8k
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Answer: Answer: Unable to install a forged BSgenome package
8 months ago James W. MacDonald 68k
0
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1
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2.1k
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Comment: Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an
8 months ago James W. MacDonald 68k
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0
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1.9k
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Comment: Comment: How can I correctly use phyloseq with Docker?
8 months ago James W. MacDonald 68k
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1
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1.9k
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Comment: Comment: How can I correctly use phyloseq with Docker?
8 months ago James W. MacDonald 68k
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1.3k
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Answer: Answer: CluserProfiler message "No gene can be mapped"
8 months ago James W. MacDonald 68k
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1
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1.3k
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Answer: Answer: CluserProfiler message "No gene can be mapped"
8 months ago James W. MacDonald 68k
0
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411
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Answer: Answer: RNA-seq input to GRaNIE
8 months ago James W. MacDonald 68k
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313
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Answer: Answer: Make DEXSeq plot normal scale
8 months ago James W. MacDonald 68k
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1
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618
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Answer: Answer: RNA Seq using Lrt
8 months ago James W. MacDonald 68k
2
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2
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2.9k
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Answer: Answer: edgeR::cpm() results in negative values from raw counts of 0
8 months ago James W. MacDonald 68k
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2
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1.3k
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Answer: Answer: Gene Ontology (GO) Analysis
8 months ago James W. MacDonald 68k
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1
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1.2k
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Answer: Answer: fast apply on RleList
8 months ago James W. MacDonald 68k
0
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0
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458
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Answer: Answer: Custom CDF creation for HTA 2.0 array using GTF annotation
8 months ago James W. MacDonald 68k
0
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0
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505
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Answer: Answer: DESeq2 - am I extracting results incorrectly?
8 months ago James W. MacDonald 68k
1
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1
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3.0k
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Answer: Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
8 months ago James W. MacDonald 68k
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0
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1.2k
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Comment: Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
9 months ago James W. MacDonald 68k
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1
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1.2k
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Answer: Answer: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
9 months ago James W. MacDonald 68k
0
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0
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747
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Answer: Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows
9 months ago James W. MacDonald 68k
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1
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1.8k
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Answer: Answer: Package developing and interoperation with Bioconductor
9 months ago James W. MacDonald 68k
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0
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1.1k
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Answer: Answer: Merging EPICV1 and V2 betas
9 months ago James W. MacDonald 68k
8,870 results • Page 2 of 178
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