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Comment: Comment: Feedback needed on new user-friendly BED file tool
7 months ago James W. MacDonald 68k
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2
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Answer: Answer: DEP R-package run_app ("TMT") spits this error: "Error: 'imputeMethods' is not a
7 months ago James W. MacDonald 68k
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512
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Comment: Comment: ORFik: spliced 5utr regions
7 months ago James W. MacDonald 68k
0
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0
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661
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Answer: Answer: MEDIPS.meth gives table with NA rpkm values
7 months ago James W. MacDonald 68k
0
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725
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Answer: Answer: cytolib uses outdated boost call
7 months ago James W. MacDonald 68k
0
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1.3k
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Comment: Comment: Install old version of DESeq2
7 months ago James W. MacDonald 68k
0
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649
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Answer: Answer: discrepancy in IDs from file and tx2gene (IDs don't match)
7 months ago James W. MacDonald 68k
0
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2.0k
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Answer: Answer: RNA-seq: TPM batch effect correction
8 months ago James W. MacDonald 68k
1
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5.7k
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Comment: Comment: Analysis of clusters of a heatmap with enrichGO of clusterProfiler: choice fo t
8 months ago James W. MacDonald 68k
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5.7k
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Answer: Answer: Analysis of clusters of a heatmap with enrichGO of clusterProfiler: choice fo t
8 months ago James W. MacDonald 68k
0
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0
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1.3k
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Answer: Answer: TopGO question
8 months ago James W. MacDonald 68k
0
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1.2k
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Answer: Answer: Starting with a clean bioconductor rstudio container
8 months ago James W. MacDonald 68k
0
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1
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1.3k
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Comment: Comment: TopGO question
8 months ago James W. MacDonald 68k
0
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0
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1.2k
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Answer: Answer: error from library(IlluminaHumanMethylationMSAmanifest)
8 months ago James W. MacDonald 68k
0
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1
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1.3k
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Comment: Comment: Position of the legend object in complexHeatmap
8 months ago James W. MacDonald 68k
0
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1
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1.3k
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Answer: Answer: Position of the legend object in complexHeatmap
9 months ago James W. MacDonald 68k
0
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0
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588
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Answer: Answer: lncRNA functional annotation package
9 months ago James W. MacDonald 68k
1
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0
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747
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Answer: Answer: Biomart server error
9 months ago James W. MacDonald 68k
2
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1
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2.3k
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Comment: Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
9 months ago James W. MacDonald 68k
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2.1k
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Comment: Comment: Heatmap of rnaseq data with z-score scale
9 months ago James W. MacDonald 68k
0
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1
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2.1k
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Answer: Answer: Heatmap of rnaseq data with z-score scale
9 months ago James W. MacDonald 68k
0
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0
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1.2k
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Answer: Answer: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin
9 months ago James W. MacDonald 68k
2
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1
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2.3k
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Answer: Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
9 months ago James W. MacDonald 68k
1
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0
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765
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Comment: Comment: AnnotationHub/ExperimentHub resources backup
9 months ago James W. MacDonald 68k
2
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1
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765
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Answer: Answer: AnnotationHub/ExperimentHub resources backup
9 months ago James W. MacDonald 68k
3
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0
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766
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Answer: Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change
9 months ago James W. MacDonald 68k
1
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0
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1.9k
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Comment: Comment: Heatmap of a transformed deseq object with pheatmap
9 months ago James W. MacDonald 68k
0
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1
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1.9k
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Answer: Answer: Heatmap of a transformed deseq object with pheatmap
9 months ago James W. MacDonald 68k
0
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1
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1.9k
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Comment: Comment: Heatmap of a transformed deseq object with pheatmap
9 months ago James W. MacDonald 68k
0
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0
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474
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Answer: Answer: Error in readCodelinkSet function
9 months ago James W. MacDonald 68k
0
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2
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6.9k
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Comment: Comment: How to load scRNA-seq data from GEO
9 months ago James W. MacDonald 68k
0
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0
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686
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Answer: Answer: Filtering out non-variable probes from EPICv2 matrix
9 months ago James W. MacDonald 68k
2
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0
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3.6k
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Answer: Answer: limma correction for tumor purity
9 months ago James W. MacDonald 68k
1
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3
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6.9k
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Answer: Answer: How to load scRNA-seq data from GEO
9 months ago James W. MacDonald 68k
0
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0
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1.9k
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Comment: Comment: Unable to install a forged BSgenome package
9 months ago James W. MacDonald 68k
1
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1
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1.9k
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Comment: Comment: Unable to install a forged BSgenome package
10 months ago James W. MacDonald 68k
1
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1
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1.9k
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Answer: Answer: Unable to install a forged BSgenome package
10 months ago James W. MacDonald 68k
0
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1
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2.2k
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Comment: Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an
10 months ago James W. MacDonald 68k
0
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0
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2.2k
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Comment: Comment: How can I correctly use phyloseq with Docker?
10 months ago James W. MacDonald 68k
0
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1
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2.2k
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Comment: Comment: How can I correctly use phyloseq with Docker?
10 months ago James W. MacDonald 68k
1
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0
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1.4k
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Answer: Answer: CluserProfiler message "No gene can be mapped"
10 months ago James W. MacDonald 68k
0
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1
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1.4k
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Answer: Answer: CluserProfiler message "No gene can be mapped"
10 months ago James W. MacDonald 68k
0
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0
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467
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Answer: Answer: RNA-seq input to GRaNIE
10 months ago James W. MacDonald 68k
0
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0
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376
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Answer: Answer: Make DEXSeq plot normal scale
10 months ago James W. MacDonald 68k
0
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1
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651
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Answer: Answer: RNA Seq using Lrt
10 months ago James W. MacDonald 68k
2
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2
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3.3k
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Answer: Answer: edgeR::cpm() results in negative values from raw counts of 0
10 months ago James W. MacDonald 68k
0
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2
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1.6k
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Answer: Answer: Gene Ontology (GO) Analysis
10 months ago James W. MacDonald 68k
0
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1
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1.4k
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Answer: Answer: fast apply on RleList
10 months ago James W. MacDonald 68k
0
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0
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538
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Answer: Answer: Custom CDF creation for HTA 2.0 array using GTF annotation
10 months ago James W. MacDonald 68k
0
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0
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537
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Answer: Answer: DESeq2 - am I extracting results incorrectly?
10 months ago James W. MacDonald 68k
8,876 results • Page 2 of 178
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