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Answer: Answer: Starting with a clean bioconductor rstudio container
4 months ago James W. MacDonald 68k
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Comment: Comment: TopGO question
4 months ago James W. MacDonald 68k
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Answer: Answer: error from library(IlluminaHumanMethylationMSAmanifest)
4 months ago James W. MacDonald 68k
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897
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Comment: Comment: Position of the legend object in complexHeatmap
5 months ago James W. MacDonald 68k
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897
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Answer: Answer: Position of the legend object in complexHeatmap
5 months ago James W. MacDonald 68k
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445
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Answer: Answer: lncRNA functional annotation package
5 months ago James W. MacDonald 68k
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640
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Answer: Answer: Biomart server error
5 months ago James W. MacDonald 68k
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Comment: Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
5 months ago James W. MacDonald 68k
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Comment: Comment: Heatmap of rnaseq data with z-score scale
5 months ago James W. MacDonald 68k
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Answer: Answer: Heatmap of rnaseq data with z-score scale
5 months ago James W. MacDonald 68k
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1.0k
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Answer: Answer: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin
5 months ago James W. MacDonald 68k
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2.0k
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Answer: Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
5 months ago James W. MacDonald 68k
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609
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Comment: Comment: AnnotationHub/ExperimentHub resources backup
5 months ago James W. MacDonald 68k
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609
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Answer: Answer: AnnotationHub/ExperimentHub resources backup
5 months ago James W. MacDonald 68k
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609
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Answer: Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change
5 months ago James W. MacDonald 68k
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1.4k
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Comment: Comment: Heatmap of a transformed deseq object with pheatmap
5 months ago James W. MacDonald 68k
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1.4k
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Answer: Answer: Heatmap of a transformed deseq object with pheatmap
5 months ago James W. MacDonald 68k
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1.4k
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Comment: Comment: Heatmap of a transformed deseq object with pheatmap
5 months ago James W. MacDonald 68k
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385
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Answer: Answer: Error in readCodelinkSet function
5 months ago James W. MacDonald 68k
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5.7k
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Comment: Comment: How to load scRNA-seq data from GEO
6 months ago James W. MacDonald 68k
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456
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Answer: Answer: Filtering out non-variable probes from EPICv2 matrix
6 months ago James W. MacDonald 68k
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Answer: Answer: limma correction for tumor purity
6 months ago James W. MacDonald 68k
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Answer: Answer: How to load scRNA-seq data from GEO
6 months ago James W. MacDonald 68k
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Comment: Comment: Unable to install a forged BSgenome package
6 months ago James W. MacDonald 68k
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1.8k
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Comment: Comment: Unable to install a forged BSgenome package
6 months ago James W. MacDonald 68k
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1
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1.8k
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Answer: Answer: Unable to install a forged BSgenome package
6 months ago James W. MacDonald 68k
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2.0k
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Comment: Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an
6 months ago James W. MacDonald 68k
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Comment: Comment: How can I correctly use phyloseq with Docker?
6 months ago James W. MacDonald 68k
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1.7k
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Comment: Comment: How can I correctly use phyloseq with Docker?
6 months ago James W. MacDonald 68k
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1.2k
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Answer: Answer: CluserProfiler message "No gene can be mapped"
6 months ago James W. MacDonald 68k
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1.2k
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Answer: Answer: CluserProfiler message "No gene can be mapped"
6 months ago James W. MacDonald 68k
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388
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Answer: Answer: RNA-seq input to GRaNIE
6 months ago James W. MacDonald 68k
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272
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Answer: Answer: Make DEXSeq plot normal scale
6 months ago James W. MacDonald 68k
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577
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Answer: Answer: RNA Seq using Lrt
6 months ago James W. MacDonald 68k
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2.5k
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Answer: Answer: edgeR::cpm() results in negative values from raw counts of 0
6 months ago James W. MacDonald 68k
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1.2k
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Answer: Answer: Gene Ontology (GO) Analysis
6 months ago James W. MacDonald 68k
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1.1k
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Answer: Answer: fast apply on RleList
6 months ago James W. MacDonald 68k
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413
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Answer: Answer: Custom CDF creation for HTA 2.0 array using GTF annotation
6 months ago James W. MacDonald 68k
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477
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Answer: Answer: DESeq2 - am I extracting results incorrectly?
7 months ago James W. MacDonald 68k
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2.9k
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Answer: Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
7 months ago James W. MacDonald 68k
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1.1k
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Comment: Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
7 months ago James W. MacDonald 68k
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1.1k
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Answer: Answer: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
7 months ago James W. MacDonald 68k
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0
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700
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Answer: Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows
7 months ago James W. MacDonald 68k
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1.7k
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Answer: Answer: Package developing and interoperation with Bioconductor
7 months ago James W. MacDonald 68k
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990
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Answer: Answer: Merging EPICV1 and V2 betas
7 months ago James W. MacDonald 68k
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411
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Answer: Answer: Merging annotation with differential expression output
7 months ago James W. MacDonald 68k
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343
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Answer: Answer: best way to grouping GSM belonging to different datasets (with different platfor
7 months ago James W. MacDonald 68k
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1.4k
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Answer: Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
7 months ago James W. MacDonald 68k
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730
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Comment: Comment: DESEQ2 looking at main effects while controlling for a continuous variable
7 months ago James W. MacDonald 68k
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730
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Answer: Answer: DESEQ2 looking at main effects while controlling for a continuous variable
7 months ago James W. MacDonald 68k
8,865 results • Page 2 of 178
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