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Answer: Answer: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana
7 months ago James W. MacDonald 68k
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639
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Answer: Answer: affy::rma results doesn't match with ncbi website
7 months ago James W. MacDonald 68k
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1
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1.1k
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Answer: Answer: Use of org.Rn.eg.db with GRCr8 reference genome
7 months ago James W. MacDonald 68k
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1
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832
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Answer: Answer: Clarification on GOALL / GO2ALLORFs mapping
7 months ago James W. MacDonald 68k
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460
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Comment: Comment: Discrepancy between Excel TPP-TR reported values and the Melt Curve reported val
7 months ago James W. MacDonald 68k
2
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1
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1.5k
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Answer: Answer: Limma - Complex 2-way multi-level contrast with paired samples
7 months ago James W. MacDonald 68k
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1
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854
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Answer: Answer: Using tximport for kallisto aligned TOIL data
8 months ago James W. MacDonald 68k
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540
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Answer: Answer: Reading gene expression data in GPR format and converting it to xlsx format
8 months ago James W. MacDonald 68k
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1.0k
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Answer: Answer: Differential expression of proteins using somascan data
8 months ago James W. MacDonald 68k
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609
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Answer: Answer: library org.Hs.eg.db failing to install
8 months ago James W. MacDonald 68k
0
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1
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575
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Answer: Answer: Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package
8 months ago James W. MacDonald 68k
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587
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Comment: Comment: Conumee2 - CNV.summaryplot()
8 months ago James W. MacDonald 68k
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406
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Answer: Answer: myvariant error
8 months ago James W. MacDonald 68k
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1
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587
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Answer: Answer: Conumee2 - CNV.summaryplot()
8 months ago James W. MacDonald 68k
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0
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450
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Answer: Answer: pairedGSEA input files
8 months ago James W. MacDonald 68k
2
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1
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1.4k
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Answer: Answer: Group-specific condition effects with individuals nested: matrix is not full ra
8 months ago James W. MacDonald 68k
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349
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Answer: Answer: TheProcess got Killed
8 months ago James W. MacDonald 68k
0
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1
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1.4k
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Comment: Comment: Group-specific condition effects with individuals nested: matrix is not full ra
8 months ago James W. MacDonald 68k
0
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0
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849
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Answer: Answer: How to adjust for Cell Type Differences between groups in Pseudo-Bulk Differenti
8 months ago James W. MacDonald 68k
1
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1
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792
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Answer: Answer: normalizatino of dna methylation EPIC data
8 months ago James W. MacDonald 68k
0
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1
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817
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Answer: Answer: WGCNA
8 months ago James W. MacDonald 68k
0
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0
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404
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Answer: Answer: Pathview visualisation not including positive log2 fold changes
8 months ago James W. MacDonald 68k
1
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0
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626
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Answer: Answer: UniProt.ws query for single UniRef90 ID takes several minutes
8 months ago James W. MacDonald 68k
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2
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644
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Answer: Answer: batch effect removal for agilent microarray data
8 months ago James W. MacDonald 68k
2
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1
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1.2k
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Answer: Answer: Store Matrix in DataFrame Cell
8 months ago James W. MacDonald 68k
0
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1
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1.8k
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Comment: Comment: For some reason I can't update BiocManager to 3.20
8 months ago James W. MacDonald 68k
0
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2
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787
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Answer: Answer: DESeq2 adujsted p-value cutoff seemingly not working
9 months ago James W. MacDonald 68k
1
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1
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1.2k
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Answer: Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
9 months ago James W. MacDonald 68k
0
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0
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516
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Answer: Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes
9 months ago James W. MacDonald 68k
0
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1
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599
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Answer: Answer: displaying the differential expression with deseq2 over 4X2 samples with the in
9 months ago James W. MacDonald 68k
0
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0
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398
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Answer: Answer: I am having issues with bowtie2_build
9 months ago James W. MacDonald 68k
1
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0
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675
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Answer: Answer: Selection of correct coefficients or contrasts in DESeq2
9 months ago James W. MacDonald 68k
1
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1
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1.8k
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Comment: Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
9 months ago James W. MacDonald 68k
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355
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Answer: Answer: Unable to find sample sheet file for ChAMP methylation data analysis
9 months ago James W. MacDonald 68k
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0
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390
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Answer: Answer: affymetrix
9 months ago James W. MacDonald 68k
0
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0
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2.0k
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Comment: Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
9 months ago James W. MacDonald 68k
0
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0
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2.0k
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Comment: Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
9 months ago James W. MacDonald 68k
0
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1
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2.0k
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Comment: Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
9 months ago James W. MacDonald 68k
3
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2
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2.0k
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Answer: Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
9 months ago James W. MacDonald 68k
0
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0
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377
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Answer: Answer: XCMS Data Processing
9 months ago James W. MacDonald 68k
0
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0
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1.6k
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Comment: Comment: Error using useMart or useEnsembl
9 months ago James W. MacDonald 68k
0
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1
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1.6k
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Answer: Answer: Error using useMart or useEnsembl
9 months ago James W. MacDonald 68k
2
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0
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744
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Answer: Answer: Error in download.file for TCGAutils::symbolsToRanges
9 months ago James W. MacDonald 68k
0
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0
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1.7k
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Comment: Comment: Biomart and ensembl not working?
9 months ago James W. MacDonald 68k
0
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1
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1.7k
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Answer: Answer: Biomart and ensembl not working?
9 months ago James W. MacDonald 68k
0
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0
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295
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Answer: Answer: Unknown gene transcripts after annotatr
9 months ago James W. MacDonald 68k
0
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0
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923
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Answer: Answer: DESeq2 Heatmap
9 months ago James W. MacDonald 68k
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0
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307
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Answer: Answer: Improve performance of qusage aggregateGeneSet
9 months ago James W. MacDonald 68k
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366
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Answer: Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000
9 months ago James W. MacDonald 68k
0
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0
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809
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Comment: Comment: iam not able to do retrive data using GEOquery R package
9 months ago James W. MacDonald 68k
8,865 results • Page 3 of 178
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