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Answer: Answer: Custom CDF creation for HTA 2.0 array using GTF annotation
10 months ago James W. MacDonald 68k
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Answer: Answer: DESeq2 - am I extracting results incorrectly?
10 months ago James W. MacDonald 68k
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Answer: Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
11 months ago James W. MacDonald 68k
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Comment: Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
11 months ago James W. MacDonald 68k
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Answer: Answer: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
11 months ago James W. MacDonald 68k
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909
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Answer: Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows
11 months ago James W. MacDonald 68k
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1.9k
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Answer: Answer: Package developing and interoperation with Bioconductor
11 months ago James W. MacDonald 68k
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1.4k
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Answer: Answer: Merging EPICV1 and V2 betas
11 months ago James W. MacDonald 68k
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534
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Answer: Answer: Merging annotation with differential expression output
11 months ago James W. MacDonald 68k
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415
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Answer: Answer: best way to grouping GSM belonging to different datasets (with different platfor
11 months ago James W. MacDonald 68k
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1.5k
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Answer: Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
11 months ago James W. MacDonald 68k
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864
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Comment: Comment: DESEQ2 looking at main effects while controlling for a continuous variable
11 months ago James W. MacDonald 68k
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864
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Answer: Answer: DESEQ2 looking at main effects while controlling for a continuous variable
11 months ago James W. MacDonald 68k
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1.7k
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Answer: Answer: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana
11 months ago James W. MacDonald 68k
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771
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Answer: Answer: affy::rma results doesn't match with ncbi website
11 months ago James W. MacDonald 68k
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1.3k
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Answer: Answer: Use of org.Rn.eg.db with GRCr8 reference genome
11 months ago James W. MacDonald 68k
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922
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Answer: Answer: Clarification on GOALL / GO2ALLORFs mapping
11 months ago James W. MacDonald 68k
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Comment: Comment: Discrepancy between Excel TPP-TR reported values and the Melt Curve reported val
11 months ago James W. MacDonald 68k
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1.8k
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Answer: Answer: Limma - Complex 2-way multi-level contrast with paired samples
11 months ago James W. MacDonald 68k
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Answer: Answer: Using tximport for kallisto aligned TOIL data
11 months ago James W. MacDonald 68k
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776
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Answer: Answer: Reading gene expression data in GPR format and converting it to xlsx format
11 months ago James W. MacDonald 68k
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1.3k
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Answer: Answer: Differential expression of proteins using somascan data
12 months ago James W. MacDonald 68k
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853
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Answer: Answer: library org.Hs.eg.db failing to install
12 months ago James W. MacDonald 68k
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654
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Answer: Answer: Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package
12 months ago James W. MacDonald 68k
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883
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Comment: Comment: Conumee2 - CNV.summaryplot()
12 months ago James W. MacDonald 68k
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502
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Answer: Answer: myvariant error
12 months ago James W. MacDonald 68k
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883
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Answer: Answer: Conumee2 - CNV.summaryplot()
12 months ago James W. MacDonald 68k
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534
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Answer: Answer: pairedGSEA input files
12 months ago James W. MacDonald 68k
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1.5k
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Answer: Answer: Group-specific condition effects with individuals nested: matrix is not full ra
12 months ago James W. MacDonald 68k
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396
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Answer: Answer: TheProcess got Killed
12 months ago James W. MacDonald 68k
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1.5k
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Comment: Comment: Group-specific condition effects with individuals nested: matrix is not full ra
12 months ago James W. MacDonald 68k
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1.7k
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Answer: Answer: How to adjust for Cell Type Differences between groups in Pseudo-Bulk Differenti
12 months ago James W. MacDonald 68k
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895
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Answer: Answer: normalizatino of dna methylation EPIC data
12 months ago James W. MacDonald 68k
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1.2k
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Answer: Answer: WGCNA
12 months ago James W. MacDonald 68k
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556
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Answer: Answer: Pathview visualisation not including positive log2 fold changes
12 months ago James W. MacDonald 68k
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803
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Answer: Answer: UniProt.ws query for single UniRef90 ID takes several minutes
12 months ago James W. MacDonald 68k
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745
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Answer: Answer: batch effect removal for agilent microarray data
12 months ago James W. MacDonald 68k
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1.3k
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Answer: Answer: Store Matrix in DataFrame Cell
12 months ago James W. MacDonald 68k
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2.9k
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Comment: Comment: For some reason I can't update BiocManager to 3.20
12 months ago James W. MacDonald 68k
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2
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948
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Answer: Answer: DESeq2 adujsted p-value cutoff seemingly not working
13 months ago James W. MacDonald 68k
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1.4k
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Answer: Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
13 months ago James W. MacDonald 68k
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695
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Answer: Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes
13 months ago James W. MacDonald 68k
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661
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Answer: Answer: displaying the differential expression with deseq2 over 4X2 samples with the in
13 months ago James W. MacDonald 68k
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501
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Answer: Answer: I am having issues with bowtie2_build
13 months ago James W. MacDonald 68k
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827
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Answer: Answer: Selection of correct coefficients or contrasts in DESeq2
13 months ago James W. MacDonald 68k
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2.3k
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Comment: Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
13 months ago James W. MacDonald 68k
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476
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Answer: Answer: Unable to find sample sheet file for ChAMP methylation data analysis
13 months ago James W. MacDonald 68k
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520
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Answer: Answer: affymetrix
13 months ago James W. MacDonald 68k
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2.6k
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Comment: Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
13 months ago James W. MacDonald 68k
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2.6k
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Comment: Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
13 months ago James W. MacDonald 68k
8,878 results • Page 3 of 178
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