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2
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Answer: Answer: Error in download.file for TCGAutils::symbolsToRanges
12 months ago James W. MacDonald 68k
0
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0
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2.3k
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Comment: Comment: Biomart and ensembl not working?
12 months ago James W. MacDonald 68k
0
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1
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2.3k
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Answer: Answer: Biomart and ensembl not working?
12 months ago James W. MacDonald 68k
0
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0
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371
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Answer: Answer: Unknown gene transcripts after annotatr
12 months ago James W. MacDonald 68k
0
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1.1k
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Answer: Answer: DESeq2 Heatmap
12 months ago James W. MacDonald 68k
0
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367
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Answer: Answer: Improve performance of qusage aggregateGeneSet
12 months ago James W. MacDonald 68k
0
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0
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459
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Answer: Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000
12 months ago James W. MacDonald 68k
0
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0
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999
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Comment: Comment: iam not able to do retrive data using GEOquery R package
12 months ago James W. MacDonald 68k
0
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1
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999
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Answer: Answer: iam not able to do retrive data using GEOquery R package
12 months ago James W. MacDonald 68k
0
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0
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2.4k
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Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
12 months ago James W. MacDonald 68k
0
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0
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560
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Answer: Answer: Installation error for Rsamtools.
12 months ago James W. MacDonald 68k
0
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0
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2.4k
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Comment: Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
12 months ago James W. MacDonald 68k
1
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1
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2.4k
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Answer: Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
12 months ago James W. MacDonald 68k
0
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0
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1.9k
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Comment: Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D
12 months ago James W. MacDonald 68k
0
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0
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1.6k
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Comment: Comment: Deseq2, enrichGO and ensembl ID
12 months ago James W. MacDonald 68k
0
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1
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1.9k
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Answer: Answer: Why did PCA plots look exactly the same after adjusting for batch covariate in D
12 months ago James W. MacDonald 68k
0
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1
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619
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Comment: Comment: Newbie Question - adding metadata to an analysis
12 months ago James W. MacDonald 68k
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1
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960
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Answer: Answer: Diffbind interpretation of data - fold change
12 months ago James W. MacDonald 68k
0
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0
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660
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Answer: Answer: No preprocessing allowed for EPICv2 with DMRcate
12 months ago James W. MacDonald 68k
0
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0
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1.2k
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Comment: Comment: How do I fix an odd voom plot in a combined dataset?
12 months ago James W. MacDonald 68k
0
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1
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619
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Answer: Answer: Newbie Question - adding metadata to an analysis
12 months ago James W. MacDonald 68k
0
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0
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728
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Comment: Comment: MissMethyl failed to use gometh function for EPICv2
12 months ago James W. MacDonald 68k
0
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1
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728
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Answer: Answer: MissMethyl failed to use gometh function for EPICv2
12 months ago James W. MacDonald 68k
0
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0
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1.7k
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Comment: Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
13 months ago James W. MacDonald 68k
0
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1
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1.7k
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Comment: Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
13 months ago James W. MacDonald 68k
1
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1
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3.2k
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Comment: Comment: nightmare to make custom txdb for genomes from ToxoDB
13 months ago James W. MacDonald 68k
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1
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3.2k
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Answer: Answer: nightmare to make custom txdb for genomes from ToxoDB
13 months ago James W. MacDonald 68k
0
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0
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1.2k
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Comment: Comment: Deseq2 Design
13 months ago James W. MacDonald 68k
0
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0
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702
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Answer: Answer: Build error on kunpeng2 Linux aarch64
13 months ago James W. MacDonald 68k
0
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0
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3.1k
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Comment: Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
13 months ago James W. MacDonald 68k
0
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1
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1.2k
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Comment: Comment: Deseq2 Design
13 months ago James W. MacDonald 68k
0
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0
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1.1k
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Comment: Comment: Help using rtracklayer for gene ID extraction
13 months ago James W. MacDonald 68k
1
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1
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1.2k
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Answer: Answer: Deseq2 Design
13 months ago James W. MacDonald 68k
0
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0
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2.0k
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Answer: Answer: Cannot install GO.db and org.Hs.eg.db
13 months ago James W. MacDonald 68k
0
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2
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1.3k
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Answer: Answer: p value is 0, padj is 0
13 months ago James W. MacDonald 68k
0
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1
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1.1k
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Answer: Answer: Help using rtracklayer for gene ID extraction
13 months ago James W. MacDonald 68k
0
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0
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827
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Comment: Comment: DESeq2 - Comparing Comparisons
13 months ago James W. MacDonald 68k
1
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1
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1.0k
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Comment: Comment: Can we get beta values with DMRcate package
13 months ago James W. MacDonald 68k
1
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1
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1.0k
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Answer: Answer: Can we get beta values with DMRcate package
13 months ago James W. MacDonald 68k
0
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1
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570
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Answer: Answer: git push errors
13 months ago James W. MacDonald 68k
1
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0
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1.9k
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Comment: Comment: How to annotate a limma Elist raw class object with an annotation file
13 months ago James W. MacDonald 68k
0
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0
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1.9k
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Comment: Comment: Differential Expression Genes as Independent Variables
13 months ago James W. MacDonald 68k
0
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1
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827
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Answer: Answer: DESeq2 - Comparing Comparisons
13 months ago James W. MacDonald 68k
0
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1
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1.9k
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Comment: Comment: Differential Expression Genes as Independent Variables
13 months ago James W. MacDonald 68k
0
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0
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1.9k
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Answer: Answer: How to annotate a limma Elist raw class object with an annotation file
13 months ago James W. MacDonald 68k
0
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1
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533
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Answer: Answer: DESeq2 sizefactors counfounded with biological treatment
14 months ago James W. MacDonald 68k
2
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0
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1.2k
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Answer: Answer: bioconductor packages on bioconda
14 months ago James W. MacDonald 68k
0
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1
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708
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Answer: Answer: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome
14 months ago James W. MacDonald 68k
1
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1
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599
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Answer: Answer: Epic v2 Annotation CpG_maf source?
14 months ago James W. MacDonald 68k
0
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0
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850
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Comment: Comment: Deseq2 res Function
14 months ago James W. MacDonald 68k
8,873 results • Page 4 of 178
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