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Answer: Answer: Meta-analysis on RNA-seq data sets
15 months ago James W. MacDonald 68k
2
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796
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Answer: Answer: Batch adjustment for cohort based RNA seq data
15 months ago James W. MacDonald 68k
0
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0
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1.9k
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Comment: Comment: Can't post a question?
15 months ago James W. MacDonald 68k
0
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1
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1.9k
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Comment: Comment: Can't post a question?
15 months ago James W. MacDonald 68k
0
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1
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978
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Answer: Answer: rtracklayer accessing UCSC data table not working
15 months ago James W. MacDonald 68k
0
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0
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516
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Answer: Answer: For feline genome
15 months ago James W. MacDonald 68k
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1
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1.1k
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Answer: Answer: Harmonizing RNA-seq data of different sourceS(cell vs. tissue) to further conduc
15 months ago James W. MacDonald 68k
1
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1
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1.2k
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Answer: Answer: Trying to convert ATACseq annotations of non-model species into human orthologs,
16 months ago James W. MacDonald 68k
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1.2k
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Comment: Comment: Trying to convert ATACseq annotations of non-model species into human orthologs,
16 months ago James W. MacDonald 68k
1
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0
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1.2k
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Answer: Answer: Trying to convert ATACseq annotations of non-model species into human orthologs,
16 months ago James W. MacDonald 68k
0
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0
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8.5k
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Comment: Comment: How to use removeBatchEffect for removing effect of multiple confounding variabl
16 months ago James W. MacDonald 68k
2
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1
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2.1k
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Comment: Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th
16 months ago James W. MacDonald 68k
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0
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2.3k
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Comment: Comment: When doing differential methylation using the sesame package, seems to only go
16 months ago James W. MacDonald 68k
1
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1
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2.1k
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Comment: Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th
16 months ago James W. MacDonald 68k
0
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1
reply
2.3k
views
Comment: Comment: When doing differential methylation using the sesame package, seems to only go
16 months ago James W. MacDonald 68k
0
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1
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2.3k
views
Comment: Comment: When doing differential methylation using the sesame package, seems to only go
16 months ago James W. MacDonald 68k
0
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1
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2.3k
views
Comment: Comment: When doing differential methylation using the sesame package, seems to only go
16 months ago James W. MacDonald 68k
2
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0
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810
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Answer: Answer: Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjus
16 months ago James W. MacDonald 68k
0
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1
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2.1k
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Comment: Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th
16 months ago James W. MacDonald 68k
0
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1
reply
2.3k
views
Comment: Comment: When doing differential methylation using the sesame package, seems to only go
16 months ago James W. MacDonald 68k
1
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0
replies
2.1k
views
Answer: Answer: clusterProfiler: BgRatio N value does not match the size of the gene universe th
16 months ago James W. MacDonald 68k
0
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1
reply
2.3k
views
Answer: Answer: When doing differential methylation using the sesame package, seems to only go
16 months ago James W. MacDonald 68k
2
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0
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606
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Answer: Answer: object 'hdac_targets' not found
16 months ago James W. MacDonald 68k
1
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1
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1.2k
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Answer: Answer: In the sesame package, what does the estimate output mean from testEnrichment()
16 months ago James W. MacDonald 68k
1
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0
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3.1k
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Comment: Comment: limma plotMDS - logFC inverted?
16 months ago James W. MacDonald 68k
0
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0
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732
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Answer: Answer: Annotating DMRs
16 months ago James W. MacDonald 68k
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1
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1.7k
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Comment: Comment: ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
16 months ago James W. MacDonald 68k
0
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1
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1.7k
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Comment: Comment: ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
16 months ago James W. MacDonald 68k
1
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2
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2.0k
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Answer: Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
16 months ago James W. MacDonald 68k
0
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0
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786
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Comment: Comment: tximport data import
16 months ago James W. MacDonald 68k
2
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1
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893
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Answer: Answer: Should tSNE from biol. replicates look alike?
16 months ago James W. MacDonald 68k
0
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0
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2.3k
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Answer: Answer: Unable to install/use limma
16 months ago James W. MacDonald 68k
0
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0
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1.9k
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Answer: Answer: 502 error biomaRt getLDS()
16 months ago James W. MacDonald 68k
1
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0
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846
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Answer: Answer: Empty Results from champ.DMP Despite Expected Output
16 months ago James W. MacDonald 68k
0
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0
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603
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Answer: Answer: error for the geneGOEnricher function of the NoRCE package
16 months ago James W. MacDonald 68k
1
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1
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2.4k
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Answer: Answer: Heatmap from the output of GSEA clusterProfiler?
16 months ago James W. MacDonald 68k
0
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1
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665
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Answer: Answer: DiffBind for MBD-seq
16 months ago James W. MacDonald 68k
1
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0
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871
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Comment: Comment: Gene filtering in DESeq2
16 months ago James W. MacDonald 68k
1
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1
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871
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Answer: Answer: Gene filtering in DESeq2
16 months ago James W. MacDonald 68k
1
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0
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1.6k
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Comment: Comment: # Invalid keytype: GOALL. Please use the keytypes method to see a listing of va
16 months ago James W. MacDonald 68k
0
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0
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639
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Comment: Comment: Missing test data for RiboProfiling package
16 months ago James W. MacDonald 68k
1
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1
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639
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Answer: Answer: Missing test data for RiboProfiling package
16 months ago James W. MacDonald 68k
1
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2
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1.7k
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Answer: Answer: Non-zero exit status error when installing GenomeInfoDbData
16 months ago James W. MacDonald 68k
0
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1
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806
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Answer: Answer: Create TidySummarizedExperiment from RangedSummarizedExperiment?
16 months ago James W. MacDonald 68k
2
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0
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4.5k
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Comment: Comment: What is the importance of `--countReadPairs` in featureCounts on paired end data
16 months ago James W. MacDonald 68k
0
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1
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1.6k
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Comment: Comment: # Invalid keytype: GOALL. Please use the keytypes method to see a listing of va
17 months ago James W. MacDonald 68k
1
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1
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1.6k
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Answer: Answer: # Invalid keytype: GOALL. Please use the keytypes method to see a listing of va
17 months ago James W. MacDonald 68k
4
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1
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4.5k
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Answer: Answer: What is the importance of `--countReadPairs` in featureCounts on paired end data
17 months ago James W. MacDonald 68k
1
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0
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1.8k
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Comment: Comment: the count matrix have decimal values
17 months ago James W. MacDonald 68k
2
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1
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1.8k
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Answer: Answer: the count matrix have decimal values
17 months ago James W. MacDonald 68k
8,870 results • Page 7 of 178
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