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Comment: Comment: Joining different datasets and analyzing using the group-specific condition effe
8 weeks ago James W. MacDonald 68k
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Comment: Comment: Joining different datasets and analyzing using the group-specific condition effe
8 weeks ago James W. MacDonald 68k
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414
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Comment: Comment: Getting a large intercept with DESeq2
3 months ago James W. MacDonald 68k
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902
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Comment: Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors
4 months ago James W. MacDonald 68k
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5.1k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
4 months ago James W. MacDonald 68k
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5.1k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
4 months ago James W. MacDonald 68k
0
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1
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5.1k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
4 months ago James W. MacDonald 68k
0
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5.1k
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Comment: Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
4 months ago James W. MacDonald 68k
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440
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Comment: Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
5 months ago James W. MacDonald 68k
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1.1k
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Comment: Comment: GO.db and others package Download failure
5 months ago James W. MacDonald 68k
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1.1k
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Comment: Comment: GO.db and others package Download failure
5 months ago James W. MacDonald 68k
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1.1k
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Comment: Comment: GO.db and others package Download failure
5 months ago James W. MacDonald 68k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
5 months ago James W. MacDonald 68k
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Comment: Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
5 months ago James W. MacDonald 68k
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573
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Comment: Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
5 months ago James W. MacDonald 68k
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681
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Comment: Comment: DESeq2 interactions
5 months ago James W. MacDonald 68k
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Comment: Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
6 months ago James W. MacDonald 68k
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1.3k
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Comment: Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
6 months ago James W. MacDonald 68k
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14k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
6 months ago James W. MacDonald 68k
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14k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
6 months ago James W. MacDonald 68k
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2.8k
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Comment: Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
6 months ago James W. MacDonald 68k
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937
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
6 months ago James W. MacDonald 68k
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937
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
6 months ago James W. MacDonald 68k
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937
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
6 months ago James W. MacDonald 68k
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937
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Comment: Comment: Getting way too many DEGs with LRT for time-series RNA-seq!
6 months ago James W. MacDonald 68k
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517
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Comment: Comment: Create consensusMatrix for codon bases
7 months ago James W. MacDonald 68k
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
7 months ago James W. MacDonald 68k
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1.1k
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
7 months ago James W. MacDonald 68k
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1.1k
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Comment: Comment: makeChipPackage(): Error in data.frame(..., check.names = FALSE) : arguments
7 months ago James W. MacDonald 68k
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746
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Comment: Comment: Feedback needed on new user-friendly BED file tool
7 months ago James W. MacDonald 68k
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533
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Comment: Comment: ORFik: spliced 5utr regions
7 months ago James W. MacDonald 68k
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1.3k
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Comment: Comment: Install old version of DESeq2
8 months ago James W. MacDonald 68k
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5.9k
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Comment: Comment: Analysis of clusters of a heatmap with enrichGO of clusterProfiler: choice fo t
8 months ago James W. MacDonald 68k
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1.4k
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Comment: Comment: TopGO question
8 months ago James W. MacDonald 68k
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1.5k
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Comment: Comment: Position of the legend object in complexHeatmap
9 months ago James W. MacDonald 68k
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2.3k
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Comment: Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
9 months ago James W. MacDonald 68k
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Comment: Comment: Heatmap of rnaseq data with z-score scale
9 months ago James W. MacDonald 68k
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808
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Comment: Comment: AnnotationHub/ExperimentHub resources backup
10 months ago James W. MacDonald 68k
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1.9k
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Comment: Comment: Heatmap of a transformed deseq object with pheatmap
10 months ago James W. MacDonald 68k
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1.9k
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Comment: Comment: Heatmap of a transformed deseq object with pheatmap
10 months ago James W. MacDonald 68k
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7.1k
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Comment: Comment: How to load scRNA-seq data from GEO
10 months ago James W. MacDonald 68k
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1.9k
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Comment: Comment: Unable to install a forged BSgenome package
10 months ago James W. MacDonald 68k
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1.9k
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Comment: Comment: Unable to install a forged BSgenome package
10 months ago James W. MacDonald 68k
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2.2k
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Comment: Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an
10 months ago James W. MacDonald 68k
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2.3k
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Comment: Comment: How can I correctly use phyloseq with Docker?
10 months ago James W. MacDonald 68k
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2.3k
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Comment: Comment: How can I correctly use phyloseq with Docker?
10 months ago James W. MacDonald 68k
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Comment: Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
11 months ago James W. MacDonald 68k
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868
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Comment: Comment: DESEQ2 looking at main effects while controlling for a continuous variable
11 months ago James W. MacDonald 68k
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539
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Comment: Comment: Discrepancy between Excel TPP-TR reported values and the Melt Curve reported val
12 months ago James W. MacDonald 68k
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917
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Comment: Comment: Conumee2 - CNV.summaryplot()
12 months ago James W. MacDonald 68k
3,322 results • Page 1 of 67
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