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Answer: Answer: Can log2cpm be used for proteomics data normalization?
3 days ago James W. MacDonald 65k
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Comment: Comment: Retrieving ceRNA data from the starBase or ENCORI Web API
3 days ago James W. MacDonald 65k
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121
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Answer: Answer: Batch effect correction: methylome data
3 days ago James W. MacDonald 65k
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440
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Comment: Comment: Extremely small p-values using Limma for proteomic data
7 days ago James W. MacDonald 65k
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440
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Comment: Comment: Extremely small p-values using Limma for proteomic data
8 days ago James W. MacDonald 65k
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1
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269
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Answer: Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
10 days ago James W. MacDonald 65k
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2
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440
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Answer: Answer: Extremely small p-values using Limma for proteomic data
10 days ago James W. MacDonald 65k
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162
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Answer: Answer: minfi latest update for EPIC V2 chip
10 days ago James W. MacDonald 65k
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0
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289
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Comment: Comment: Help with running egsea()
11 days ago James W. MacDonald 65k
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289
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Comment: Comment: Help with running egsea()
11 days ago James W. MacDonald 65k
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2
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289
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Answer: Answer: Help with running egsea()
11 days ago James W. MacDonald 65k
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220
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Answer: Answer: Couldn't connect to server while using "pathways"
11 days ago James W. MacDonald 65k
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397
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Answer: Answer: limma Intercept vs No-intercept models completely changing DMR results?
14 days ago James W. MacDonald 65k
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254
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Answer: Answer: Too many significant genes when integrating gtex and tcga
14 days ago James W. MacDonald 65k
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290
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Comment: Comment: Once again a "Model matrix not full rank"
14 days ago James W. MacDonald 65k
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1
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290
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Comment: Comment: Once again a "Model matrix not full rank"
15 days ago James W. MacDonald 65k
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290
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Answer: Answer: Once again a "Model matrix not full rank"
15 days ago James W. MacDonald 65k
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2.8k
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Comment: Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
15 days ago James W. MacDonald 65k
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159
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Answer: Answer: DESeq2 v1.35.0
15 days ago James W. MacDonald 65k
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270
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Comment: Comment: Store output of matchPWM()
16 days ago James W. MacDonald 65k
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270
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Answer: Answer: Store output of matchPWM()
16 days ago James W. MacDonald 65k
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2
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288
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Answer: Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
16 days ago James W. MacDonald 65k
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262
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Answer: Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
17 days ago James W. MacDonald 65k
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260
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Comment: Comment: Help with error using camera() in limma
17 days ago James W. MacDonald 65k
2
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1
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260
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Answer: Answer: Help with error using camera() in limma
17 days ago James W. MacDonald 65k
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273
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Comment: Comment: Assist me in determining whether the analysis process using the limma package ha
17 days ago James W. MacDonald 65k
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1
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273
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Answer: Answer: Assist me in determining whether the analysis process using the limma package ha
18 days ago James W. MacDonald 65k
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262
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Comment: Comment: Minfi - estimatecellscount
18 days ago James W. MacDonald 65k
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1
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357
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Comment: Comment: Math expression in shapeCustom legend in EnhancedVolcano
22 days ago James W. MacDonald 65k
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1
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357
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Comment: Comment: Math expression in shapeCustom legend in EnhancedVolcano
22 days ago James W. MacDonald 65k
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1
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357
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Comment: Comment: Math expression in shapeCustom legend in EnhancedVolcano
22 days ago James W. MacDonald 65k
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1
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357
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Comment: Comment: Math expression in shapeCustom legend in EnhancedVolcano
22 days ago James W. MacDonald 65k
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0
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426
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Comment: Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
22 days ago James W. MacDonald 65k
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1
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357
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Answer: Answer: Math expression in shapeCustom legend in EnhancedVolcano
22 days ago James W. MacDonald 65k
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1
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426
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Comment: Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
22 days ago James W. MacDonald 65k
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258
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Comment: Comment: How to retrieve gene ontology GO class from gene list?
22 days ago James W. MacDonald 65k
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2
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426
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Comment: Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
22 days ago James W. MacDonald 65k
2
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1
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426
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Answer: Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
22 days ago James W. MacDonald 65k
1
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1
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356
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Comment: Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
22 days ago James W. MacDonald 65k
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304
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Comment: Comment: get BM error
23 days ago James W. MacDonald 65k
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324
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Comment: Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
23 days ago James W. MacDonald 65k
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304
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Answer: Answer: get BM error
23 days ago James W. MacDonald 65k
2
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1
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258
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Answer: Answer: How to retrieve gene ontology GO class from gene list?
23 days ago James W. MacDonald 65k
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1
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258
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Comment: Comment: How to retrieve gene ontology GO class?
24 days ago James W. MacDonald 65k
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1
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324
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Comment: Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
24 days ago James W. MacDonald 65k
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280
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Comment: Comment: Error EPICv2 ChAMP
25 days ago James W. MacDonald 65k
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280
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Answer: Answer: Error EPICv2 ChAMP
25 days ago James W. MacDonald 65k
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0
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136
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Answer: Answer: FDR via q-value
25 days ago James W. MacDonald 65k
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1
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324
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Answer: Answer: Error for AnnotationForge makeOrgPackageFromNCBI function
25 days ago James W. MacDonald 65k
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0
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173
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Comment: Comment: Error retrieving ensembl gene id using biomaRt...
28 days ago James W. MacDonald 65k
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