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Answer: Answer: Error in classify_gene_pairs
7 weeks ago James W. MacDonald 65k
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146
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Answer: Answer: Is random access by row index possible for an indexed VCF file?
7 weeks ago James W. MacDonald 65k
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252
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Answer: Answer: supportedOrganisms() in goseq producing Error in names(trackIds)
7 weeks ago James W. MacDonald 65k
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181
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Answer: Answer: Error with BSgenome, wanting to analyse non-model species with ATACseqQC
7 weeks ago James W. MacDonald 65k
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2
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396
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Answer: Answer: DESeq and SVA for batch effect
7 weeks ago James W. MacDonald 65k
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1
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339
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Answer: Answer: Factor vs Character in design
8 weeks ago James W. MacDonald 65k
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165
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Answer: Answer: error in Matrix function
8 weeks ago James W. MacDonald 65k
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1
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303
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Answer: Answer: Would I treat surrogate variables as batches?
8 weeks ago James W. MacDonald 65k
2
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445
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Answer: Answer: DGE analysis with LIMMA
8 weeks ago James W. MacDonald 65k
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242
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Answer: Answer: Changed DESeq2 comparison value but the heatmap is still the same
8 weeks ago James W. MacDonald 65k
3
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417
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Answer: Answer: Estimating Cell Counts for EPIC V2 array data
8 weeks ago James W. MacDonald 65k
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0
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332
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Answer: Answer: clusterProfiler, AnnotationHub, and discrepancies in GO Terms
8 weeks ago James W. MacDonald 65k
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176
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Answer: Answer: Matrix multiplication error to estimate telomere length
9 weeks ago James W. MacDonald 65k
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1
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270
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Answer: Answer: impute.knn produces different results based on matrix order
9 weeks ago James W. MacDonald 65k
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2
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447
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Answer: Answer: "could not find function "readTSGE" in package ctsGE" Error occurs when trying t
9 weeks ago James W. MacDonald 65k
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288
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Answer: Answer: Error in featureCounts matrix
9 weeks ago James W. MacDonald 65k
1
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0
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306
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Answer: Answer: locfunc not found in DESeq2
9 weeks ago James W. MacDonald 65k
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388
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Answer: Answer: Comparing gene expression across three tissue types to identify any difference.
9 weeks ago James W. MacDonald 65k
1
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0
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284
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Answer: Answer: Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
9 weeks ago James W. MacDonald 65k
1
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0
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254
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Answer: Answer: Mapping LOC genes between species using Orthology.eg.db (or a similar tool)
9 weeks ago James W. MacDonald 65k
0
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1
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407
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Answer: Answer: Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
10 weeks ago James W. MacDonald 65k
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1
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359
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Answer: Answer: frma normalization
10 weeks ago James W. MacDonald 65k
2
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0
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252
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Answer: Answer: Error in enrichKEGG for a model organism
10 weeks ago James W. MacDonald 65k
1
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0
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194
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Answer: Answer: Clsuter Profiler "counts"
10 weeks ago James W. MacDonald 65k
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0
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171
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Answer: Answer: error with spatialDE::run() and basilisk i/f
11 weeks ago James W. MacDonald 65k
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1
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450
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Answer: Answer: error in reading idat files and creating rgset
11 weeks ago James W. MacDonald 65k
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0
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221
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Answer: Answer: Canonical transcripts Mus musculus
11 weeks ago James W. MacDonald 65k
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1
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358
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Answer: Answer: Biplot has a secondary x-axis and y-axis
11 weeks ago James W. MacDonald 65k
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1
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602
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Answer: Answer: How do you post on this forum?
11 weeks ago James W. MacDonald 65k
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1
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361
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Answer: Answer: limma with interaction term
11 weeks ago James W. MacDonald 65k
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199
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Answer: Answer: GC content track on GVIZ
11 weeks ago James W. MacDonald 65k
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307
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Answer: Answer: seqlevelsStyle() not working
11 weeks ago James W. MacDonald 65k
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9.3k
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Answer: Answer: How to find rsID with biomaRt in R
11 weeks ago James W. MacDonald 65k
0
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1
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481
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Answer: Answer: Help with DESeq results to pathways with the fgsea package
12 weeks ago James W. MacDonald 65k
2
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1
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321
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Answer: Answer: ComplexHeatmap crashing R session
12 weeks ago James W. MacDonald 65k
1
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1
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363
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Answer: Answer: TMM normalization after RUVg correction
12 weeks ago James W. MacDonald 65k
2
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0
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262
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Answer: Answer: Need Help w/ Subset on GRangesList
12 weeks ago James W. MacDonald 65k
0
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1
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366
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Answer: Answer: LOG2FC DESEQ2
3 months ago James W. MacDonald 65k
1
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1
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405
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Answer: Answer: DEXSeq: summarizeOverlaps() crashes Rstudio with too many samples
3 months ago James W. MacDonald 65k
0
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1
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329
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Answer: Answer: DNABarcodes-Installation Issue
3 months ago James W. MacDonald 65k
0
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0
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175
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Answer: Answer: How to control RAN-seq samples from different libraries
3 months ago James W. MacDonald 65k
0
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1
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390
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Answer: Answer: Ballgown error in scan for c.tab files
3 months ago James W. MacDonald 65k
2
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2
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750
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Answer: Answer: biomaRt has encountered an unknown server error.
3 months ago James W. MacDonald 65k
1
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0
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229
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Answer: Answer: Question about correction of confounders for EWAS
3 months ago James W. MacDonald 65k
0
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1
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396
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Answer: Answer: GO enrichment analysis does not show any pathways in my case
3 months ago James W. MacDonald 65k
1
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2
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562
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Answer: Answer: readDGE in edgeR giving me path names as sample names
3 months ago James W. MacDonald 65k
0
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1
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267
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Answer: Answer: ConsensusClusterPlus dosesn't make an output file
3 months ago James W. MacDonald 65k
1
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2
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566
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Answer: Answer: Comparing relative expression of a conserved gene between distantly related spec
3 months ago James W. MacDonald 65k
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294
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Answer: Answer: When should I correct for batch effects
3 months ago James W. MacDonald 65k
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269
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Answer: Answer: ClusterProfiler result question: Why are all many of my resulting p.adjust value
3 months ago James W. MacDonald 65k
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