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Comment:
Comment: DESeq and SVA for batch effect
8 weeks ago
James W. MacDonald
65k
0
votes
1
reply
415
views
Comment:
Comment: DESeq and SVA for batch effect
8 weeks ago
James W. MacDonald
65k
0
votes
1
reply
524
views
Comment:
Comment: Constrast for Time Course Experiments using Limma
8 weeks ago
James W. MacDonald
65k
0
votes
0
replies
358
views
Comment:
Comment: Factor vs Character in design
9 weeks ago
James W. MacDonald
65k
1
vote
2
replies
358
views
Comment:
Comment: Factor vs Character in design
9 weeks ago
James W. MacDonald
65k
0
votes
0
replies
1.4k
views
Comment:
Comment: How to get DMR for Infinium methylation EPIC v2
9 weeks ago
James W. MacDonald
65k
0
votes
0
replies
311
views
Comment:
Comment: Would I treat surrogate variables as batches?
9 weeks ago
James W. MacDonald
65k
1
vote
0
replies
468
views
Comment:
Comment: DGE analysis with LIMMA
9 weeks ago
James W. MacDonald
65k
2
votes
1
reply
468
views
Comment:
Comment: DGE analysis with LIMMA
9 weeks ago
James W. MacDonald
65k
2
votes
1
reply
446
views
Comment:
Comment: Estimating Cell Counts for EPIC V2 array data
9 weeks ago
James W. MacDonald
65k
0
votes
0
replies
277
views
Comment:
Comment: impute.knn produces different results based on matrix order
9 weeks ago
James W. MacDonald
65k
0
votes
0
replies
751
views
Comment:
Comment: Help creating BSgenome object for new canine and feline genomes?
10 weeks ago
James W. MacDonald
65k
0
votes
1
reply
742
views
Comment:
Comment: StringDB: Cannot finish their tutorial because of an error
10 weeks ago
James W. MacDonald
65k
0
votes
0
replies
566
views
Comment:
Comment: limma fo continous variables
10 weeks ago
James W. MacDonald
65k
0
votes
1
reply
401
views
Comment:
Comment: Comparing gene expression across three tissue types to identify any difference.
10 weeks ago
James W. MacDonald
65k
1
vote
1
reply
528
views
Comment:
Comment: Downloading package mixOmics
10 weeks ago
James W. MacDonald
65k
0
votes
0
replies
447
views
Comment:
Comment: Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
11 weeks ago
James W. MacDonald
65k
0
votes
1
reply
447
views
Comment:
Comment: Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
11 weeks ago
James W. MacDonald
65k
0
votes
0
replies
365
views
Comment:
Comment: frma normalization
11 weeks ago
James W. MacDonald
65k
0
votes
0
replies
500
views
Comment:
Comment: Help with DESeq results to pathways with the fgsea package
12 weeks ago
James W. MacDonald
65k
0
votes
0
replies
465
views
Comment:
Comment: error in reading idat files and creating rgset
12 weeks ago
James W. MacDonald
65k
0
votes
1
reply
465
views
Comment:
Comment: error in reading idat files and creating rgset
12 weeks ago
James W. MacDonald
65k
0
votes
1
reply
465
views
Comment:
Comment: error in reading idat files and creating rgset
12 weeks ago
James W. MacDonald
65k
0
votes
0
replies
371
views
Comment:
Comment: Biplot has a secondary x-axis and y-axis
12 weeks ago
James W. MacDonald
65k
0
votes
0
replies
376
views
Comment:
Comment: limma with interaction term
12 weeks ago
James W. MacDonald
65k
0
votes
1
reply
625
views
Comment:
Comment: How do you post on this forum?
12 weeks ago
James W. MacDonald
65k
1
vote
1
reply
625
views
Comment:
Comment: How do you post on this forum?
12 weeks ago
James W. MacDonald
65k
0
votes
1
reply
500
views
Comment:
Comment: Help with DESeq results to pathways with the fgsea package
12 weeks ago
James W. MacDonald
65k
1
vote
1
reply
707
views
Comment:
Comment: Problems with enrichGO
12 weeks ago
James W. MacDonald
65k
1
vote
1
reply
707
views
Comment:
Comment: Problems with enrichGO
3 months ago
James W. MacDonald
65k
0
votes
1
reply
707
views
Comment:
Comment: Problems with enrichGO
3 months ago
James W. MacDonald
65k
0
votes
2
replies
707
views
Comment:
Comment: Problems with enrichGO
3 months ago
James W. MacDonald
65k
0
votes
1
reply
707
views
Comment:
Comment: Problems with enrichGO
3 months ago
James W. MacDonald
65k
0
votes
1
reply
707
views
Comment:
Comment: Problems with enrichGO
3 months ago
James W. MacDonald
65k
0
votes
1
reply
707
views
Comment:
Comment: Problems with enrichGO
3 months ago
James W. MacDonald
65k
1
vote
1
reply
419
views
Comment:
Comment: DEXSeq: summarizeOverlaps() crashes Rstudio with too many samples
3 months ago
James W. MacDonald
65k
1
vote
0
replies
374
views
Comment:
Comment: TMM normalization after RUVg correction
3 months ago
James W. MacDonald
65k
0
votes
0
replies
543
views
Comment:
Comment: Need help generating BSgenome and orgdb
3 months ago
James W. MacDonald
65k
0
votes
1
reply
942
views
Comment:
Comment: Error MakeOrgPackagefromNCBI
3 months ago
James W. MacDonald
65k
0
votes
1
reply
344
views
Comment:
Comment: DNABarcodes-Installation Issue
3 months ago
James W. MacDonald
65k
0
votes
1
reply
404
views
Comment:
Comment: Ballgown error in scan for c.tab files
3 months ago
James W. MacDonald
65k
2
votes
1
reply
1.0k
views
Comment:
Comment: Packages don't update, but no error or warning is thrown
3 months ago
James W. MacDonald
65k
0
votes
1
reply
1.0k
views
Comment:
Comment: Packages don't update, but no error or warning is thrown
3 months ago
James W. MacDonald
65k
0
votes
1
reply
1.0k
views
Comment:
Comment: Packages don't update, but no error or warning is thrown
3 months ago
James W. MacDonald
65k
0
votes
0
replies
781
views
Comment:
Comment: biomaRt has encountered an unknown server error.
3 months ago
James W. MacDonald
65k
1
vote
1
reply
781
views
Comment:
Comment: biomaRt has encountered an unknown server error.
3 months ago
James W. MacDonald
65k
2
votes
0
replies
436
views
Comment:
Comment: edgeR - Design matrix for comparisons of all and subsets of samples
3 months ago
James W. MacDonald
65k
0
votes
0
replies
417
views
Comment:
Comment: GO enrichment analysis does not show any pathways in my case
3 months ago
James W. MacDonald
65k
1
vote
0
replies
551
views
Comment:
Comment: edgeR error "Design matrix not of full rank"
updated 3 months ago by
Gordon Smyth
50k • written 3 months ago by
James W. MacDonald
65k
2
votes
0
replies
578
views
Comment:
Comment: readDGE in edgeR giving me path names as sample names
3 months ago
James W. MacDonald
65k
3,103 results • Page
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