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Answer: Answer: DNABarcodes-Installation Issue
3 months ago James W. MacDonald 65k
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0
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197
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Answer: Answer: How to control RAN-seq samples from different libraries
3 months ago James W. MacDonald 65k
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1
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439
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Answer: Answer: Ballgown error in scan for c.tab files
3 months ago James W. MacDonald 65k
2
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2
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859
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Answer: Answer: biomaRt has encountered an unknown server error.
3 months ago James W. MacDonald 65k
1
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0
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261
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Answer: Answer: Question about correction of confounders for EWAS
3 months ago James W. MacDonald 65k
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456
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Answer: Answer: GO enrichment analysis does not show any pathways in my case
3 months ago James W. MacDonald 65k
1
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2
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599
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Answer: Answer: readDGE in edgeR giving me path names as sample names
3 months ago James W. MacDonald 65k
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1
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290
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Answer: Answer: ConsensusClusterPlus dosesn't make an output file
3 months ago James W. MacDonald 65k
1
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2
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620
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Answer: Answer: Comparing relative expression of a conserved gene between distantly related spec
3 months ago James W. MacDonald 65k
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343
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Answer: Answer: When should I correct for batch effects
3 months ago James W. MacDonald 65k
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311
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Answer: Answer: ClusterProfiler result question: Why are all many of my resulting p.adjust value
3 months ago James W. MacDonald 65k
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258
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Answer: Answer: visualizing GSEA showCategory question
3 months ago James W. MacDonald 65k
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265
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Answer: Answer: Dimensionality reduction visualization
3 months ago James W. MacDonald 65k
2
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1
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593
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Answer: Answer: Merging of Human and Mouse SingleCellExperiment Objects Error
3 months ago James W. MacDonald 65k
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1.1k
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Answer: Answer: Problem installing package, version of dependency issue
4 months ago James W. MacDonald 65k
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244
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Answer: Answer: [DESEQ2] When to average biological replicates for hierarchical clustering
4 months ago James W. MacDonald 65k
2
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1
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337
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Answer: Answer: How to interpret log2fold values when using numeric contrasts in DESEQ2?
4 months ago James W. MacDonald 65k
3
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387
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Answer: Answer: Enrichement with clusterProfiler and biomart
4 months ago James W. MacDonald 65k
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351
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Answer: Answer: makeOrgPackageFromNCBI generates an empty database?
4 months ago James W. MacDonald 65k
1
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0
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216
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Answer: Answer: Looking for a MSigDB chip file
4 months ago James W. MacDonald 65k
2
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1
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455
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Answer: Answer: edgeR - Design matrix for comparisons of all and subsets of samples
4 months ago James W. MacDonald 65k
1
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1
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483
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Answer: Answer: Batch-resolved visualization after RUVg normalization?
4 months ago James W. MacDonald 65k
0
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1
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537
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Answer: Answer: distanceToNearest
4 months ago James W. MacDonald 65k
0
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0
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754
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Answer: Answer: ChAMP - obtaining beta values using EPICv2 annotation
4 months ago James W. MacDonald 65k
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1
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417
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Answer: Answer: Problem with loading ensembl version 105.
4 months ago James W. MacDonald 65k
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500
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Answer: Answer: DESeq2: the model matrix is not full rank issue
4 months ago James W. MacDonald 65k
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599
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Answer: Answer: DESeq2 collinearity, adjusting for covariates, and the ground truth
4 months ago James W. MacDonald 65k
0
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1
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445
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Answer: Answer: Use of data packages in containers
4 months ago James W. MacDonald 65k
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2
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569
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Answer: Answer: Unexpected results for a differential expression analysis between males and fema
4 months ago James W. MacDonald 65k
2
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0
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428
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Answer: Answer: Txdb object for UCSC hs1 (T2T-CHM13)
5 months ago James W. MacDonald 65k
1
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1
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955
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Answer: Answer: Reduce single cell experiment size to use as reference for annotation with Singl
5 months ago James W. MacDonald 65k
0
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0
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349
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Answer: Answer: Running DESeq on normalized data
5 months ago James W. MacDonald 65k
0
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1
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372
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Answer: Answer: StringDB: Cannot use payload mechanism to colour nodes
5 months ago James W. MacDonald 65k
0
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1
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489
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Answer: Answer: EnhancedVolcano with labels based on log2 Fold Change
5 months ago James W. MacDonald 65k
0
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1
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426
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Answer: Answer: Linear Model Fitting and Colinearity
5 months ago James W. MacDonald 65k
2
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1
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1.3k
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Answer: Answer: Using STAR's readspergene.tab.out outputs to make gene-level count matrix for DE
5 months ago James W. MacDonald 65k
0
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0
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326
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Answer: Answer: Can't download Bioconductor
5 months ago James W. MacDonald 65k
3
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1
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478
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Answer: Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)
5 months ago James W. MacDonald 65k
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0
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360
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Answer: Answer: Interaction terms in DESeq2
5 months ago James W. MacDonald 65k
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0
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1.0k
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Answer: Answer: WGCNA documentation not available
5 months ago James W. MacDonald 65k
0
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0
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760
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Answer: Answer: biomaRt_getBM_Failed to collect lazy table
5 months ago James W. MacDonald 65k
0
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1
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454
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Answer: Answer: rDGIdb package inconsistency with web interface
5 months ago James W. MacDonald 65k
2
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0
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599
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Answer: Answer: Filter genes by expression for voomLmFit
5 months ago James W. MacDonald 65k
0
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0
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430
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Answer: Answer: GENESIS: Can not use GdsGenotypeReader to read a gds file
5 months ago James W. MacDonald 65k
0
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1
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303
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Answer: Answer: Java error while running HiCDC overview code
5 months ago James W. MacDonald 65k
0
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0
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370
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Answer: Answer: NCBI protein conversion to CDNA and NCBI gene (in R)
5 months ago James W. MacDonald 65k
0
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1
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754
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Answer: Answer: GOslim missing GO term
5 months ago James W. MacDonald 65k
1
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0
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455
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Answer: Answer: EdgeR: Exact test and glmQLFTest produce very different results
5 months ago James W. MacDonald 65k
4
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1
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859
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Answer: Answer: limma::voom vs edgeR::voomLmFit - when to use?
5 months ago James W. MacDonald 65k
1
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1
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520
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Answer: Answer: NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
5 months ago James W. MacDonald 65k
5,120 results • Page 3 of 103
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