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Answer: Answer: GENESIS: error in crossprod
11 weeks ago Stephanie M. Gogarten ▴ 870
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0
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417
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Answer: Answer: GENESIS: Can not use GdsGenotypeReader to read a gds file
5 months ago Stephanie M. Gogarten ▴ 870
1
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1
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596
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Answer: Answer: Help for SeqVarData function
8 months ago Stephanie M. Gogarten ▴ 870
1
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1
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776
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Answer: Answer: assocTestSingle output with GxE
10 months ago Stephanie M. Gogarten ▴ 870
1
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1
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857
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Answer: Answer: Question about GWASTools gdsSubset
15 months ago Stephanie M. Gogarten ▴ 870
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1
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1.0k
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Answer: Answer: Add GP values to VCF
16 months ago Stephanie M. Gogarten ▴ 870
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708
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Answer: Answer: kinToMatrix creates an empty matrix (except for diagonal 0.5 values)
18 months ago Stephanie M. Gogarten ▴ 870
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0
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946
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Answer: Answer: How to project a new vector onto PCA space using snpgdsPCA( )?
2.1 years ago Stephanie M. Gogarten ▴ 870
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0
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1.1k
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Answer: Answer: SNP annotation
2.3 years ago Stephanie M. Gogarten ▴ 870
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0
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848
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Answer: Answer: Approximations to Est and Est.SE in GENESIS
3.4 years ago Stephanie M. Gogarten ▴ 870
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2
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1.4k
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Answer: A: Alternate allele for GENESIS?
3.7 years ago Stephanie M. Gogarten ▴ 870
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0
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789
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Answer: A: using GENESIS R package with non-human species
3.8 years ago Stephanie M. Gogarten ▴ 870
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1
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907
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Answer: A: Association testing model in GENESIS
3.8 years ago Stephanie M. Gogarten ▴ 870
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0
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1.1k
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Answer: A: GENESIS multiple gds files
3.9 years ago Stephanie M. Gogarten ▴ 870
1
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0
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1.4k
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Answer: A: How to imports DS field from VCF files with SeqArray seqVCF2GDS()
3.9 years ago Stephanie M. Gogarten ▴ 870
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0
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672
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Answer: A: Does GENESIS match scan IDs for genotype and phenotype data?
4.3 years ago Stephanie M. Gogarten ▴ 870
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0
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1.4k
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Answer: A: SeqVarData Error sample.id in sampleData does not match GDS file
4.3 years ago Stephanie M. Gogarten ▴ 870
1
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0
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809
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Answer: A: Why did the Wald test disappear from GENESIS?
4.5 years ago Stephanie M. Gogarten ▴ 870
1
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0
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1.0k
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Answer: A: Calculating the z score from wald test association results in GENESIS
4.6 years ago Stephanie M. Gogarten ▴ 870
2
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2
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1.4k
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Answer: A: Interpreting the output of score test using GENESIS
4.6 years ago Stephanie M. Gogarten ▴ 870
1
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1
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1.1k
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Answer: A: Sporadic missingness with admixmmap
4.6 years ago Stephanie M. Gogarten ▴ 870
1
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1
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1.2k
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Answer: A: seqVCF2GDS Error Converting VCF to GDS file
4.7 years ago Stephanie M. Gogarten ▴ 870
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1
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1.2k
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Answer: A: GENESIS: ascertainment in GWAS
4.8 years ago Stephanie M. Gogarten ▴ 870
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1
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1.5k
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Answer: A: sample ids not matching when creating SeqVarData object
4.8 years ago Stephanie M. Gogarten ▴ 870
2
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2
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2.8k
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Answer: A: Genesis: doubts with admixMAPMM
5.0 years ago Stephanie M. Gogarten ▴ 870
1
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0
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1.6k
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Answer: A: VCF file does not include snp.id, can I still run SNPRelate for Relatedness Anal
5.1 years ago Stephanie M. Gogarten ▴ 870
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0
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914
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Answer: A: betas for binary outcome
5.1 years ago Stephanie M. Gogarten ▴ 870
1
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0
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985
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Answer: A: PCA axis description SNPRelate
5.1 years ago Stephanie M. Gogarten ▴ 870
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1
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2.3k
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Answer: A: GENESIS pcrelate() write gds file doesn't work
5.2 years ago Stephanie M. Gogarten ▴ 870
1
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0
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1.8k
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Answer: A: Imputed dosages in GENESIS
5.2 years ago Stephanie M. Gogarten ▴ 870
1
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0
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916
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Answer: A: GENESIS pcrelate() to load gds file and continue where the function broke
5.5 years ago Stephanie M. Gogarten ▴ 870
1
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0
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1.8k
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Answer: A: Imputed dosages in GENESIS
5.6 years ago Stephanie M. Gogarten ▴ 870
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0
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907
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Answer: A: Using previously calculated PCs in GENESIS
5.6 years ago Stephanie M. Gogarten ▴ 870
0
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0
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1.4k
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Answer: A: Seq Array converting VCF to GDS using seqVCF2GDS, unable to find file problems w
5.7 years ago Stephanie M. Gogarten ▴ 870
0
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0
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784
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Answer: A: selecting SNPs and samples in GENESIS
5.7 years ago Stephanie M. Gogarten ▴ 870
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1
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1.8k
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Answer: A: GENESIS: king2mat: subscript out of bounds
6.0 years ago Stephanie M. Gogarten ▴ 870
0
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0
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903
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Answer: A: GWASTools vcfWrite function
6.0 years ago Stephanie M. Gogarten ▴ 870
0
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1
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1.9k
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Answer: A: how to save subsetted GDS file
6.0 years ago Stephanie M. Gogarten ▴ 870
0
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0
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1.6k
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Answer: A: Error converting vcf to gds
6.1 years ago Stephanie M. Gogarten ▴ 870
1
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0
replies
807
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Answer: A: Missing normalized x, normalized y, baf and logrrratio values
6.1 years ago Stephanie M. Gogarten ▴ 870
0
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1
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1.9k
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Answer: A: SeqArray_1.19.2, SeqArray::info() for example gds data does not return correct c
6.4 years ago Stephanie M. Gogarten ▴ 870
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0
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1.5k
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Answer: A: Question on 'gdsSubset' function
6.5 years ago Stephanie M. Gogarten ▴ 870
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0
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1.8k
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Answer: A: Creating Intensity GDS file for the R package GWAStools
6.8 years ago Stephanie M. Gogarten ▴ 870
0
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1
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2.2k
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Answer: A: Error using readVcf
6.9 years ago Stephanie M. Gogarten ▴ 870
1
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1
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1.8k
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Answer: A: "set genotype" function for gds?
7.3 years ago Stephanie M. Gogarten ▴ 870
1
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1
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3.7k
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Answer: A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
8.0 years ago Stephanie M. Gogarten ▴ 870
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0
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1.1k
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Answer: A: Using custom expected R to estimate LRR with GWASTools
8.3 years ago Stephanie M. Gogarten ▴ 870
2
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0
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1.7k
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Answer: A: Meaning of NA for LRR and BAF values estimated with GWASTools
8.4 years ago Stephanie M. Gogarten ▴ 870
2
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0
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1.2k
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Answer: A: genotypeToSnpMatrix doesn't handle PL
8.5 years ago Stephanie M. Gogarten ▴ 870
2
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1
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1.6k
views
Answer: A: Importing affymetrix genotype calls with GWASTools
8.6 years ago Stephanie M. Gogarten ▴ 870
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