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159
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GENESIS: error in crossprod
GENESIS
6 weeks ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
159
views
Answer:
Answer: GENESIS: error in crossprod
6 weeks ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
339
views
Answer:
Answer: GENESIS: Can not use GdsGenotypeReader to read a gds file
3 months ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
355
views
Comment:
Comment: SKAT-O method using GENESIS, question about range iterator using SeqVarWindowIte
4 months ago
Stephanie M. Gogarten
▴ 870
1
vote
1
reply
511
views
Answer:
Answer: Help for SeqVarData function
7 months ago
Stephanie M. Gogarten
▴ 870
1
vote
0
replies
725
views
Comment:
Comment: assocTestSingle output with GxE
9 months ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
725
views
Comment:
Comment: assocTestSingle output with GxE
9 months ago
Stephanie M. Gogarten
▴ 870
1
vote
1
reply
725
views
Answer:
Answer: assocTestSingle output with GxE
9 months ago
Stephanie M. Gogarten
▴ 870
1
vote
0
replies
787
views
Comment:
Comment: Question about GWASTools gdsSubset
13 months ago
Stephanie M. Gogarten
▴ 870
1
vote
1
reply
787
views
Answer:
Answer: Question about GWASTools gdsSubset
13 months ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
953
views
Comment:
Comment: Add GP values to VCF
14 months ago
Stephanie M. Gogarten
▴ 870
0
votes
3
replies
953
views
Add GP values to VCF
VariantAnnotation
14 months ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
953
views
Answer:
Answer: Add GP values to VCF
14 months ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
668
views
Answer:
Answer: kinToMatrix creates an empty matrix (except for diagonal 0.5 values)
17 months ago
Stephanie M. Gogarten
▴ 870
0
votes
2
replies
2.5k
views
merging VCF files
VariantAnnotation
VariantAnnotation
VariantAnnotation
VariantAnnotation
written 11.2 years ago by
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
593
views
warning for gsutil_requesterpays when reading from gsutil_pipe
AnVIL
updated 2.0 years ago by
Martin Morgan
25k • written 2.2 years ago by
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
893
views
Answer:
Answer: How to project a new vector onto PCA space using snpgdsPCA( )?
2.0 years ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
1.0k
views
Answer:
Answer: SNP annotation
2.2 years ago
Stephanie M. Gogarten
▴ 870
1
vote
1
reply
624
views
Can I write to "Workspace data" table with the AnVIL package?
AnVIL
updated 2.2 years ago by
Martin Morgan
25k • written 2.2 years ago by
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
968
views
Comment:
Comment: Error "unauthorized" in avtable_import
2.4 years ago
Stephanie M. Gogarten
▴ 870
1
vote
3
replies
968
views
Error "unauthorized" in avtable_import
AnVIL
2.4 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
802
views
Approximations to Est and Est.SE in GENESIS
GENESIS
3.3 years ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
802
views
Answer:
Answer: Approximations to Est and Est.SE in GENESIS
3.3 years ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
647
views
X chromosome analyses for males in GENESIS
GENESIS
3.4 years ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
1.3k
views
Comment:
C: Alternate allele for GENESIS?
3.6 years ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
1.3k
views
Comment:
C: Alternate allele for GENESIS?
3.6 years ago
Stephanie M. Gogarten
▴ 870
0
votes
2
replies
1.3k
views
Answer:
A: Alternate allele for GENESIS?
3.6 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
763
views
using GENESIS R package with non-human species
genesis
gwastools
3.7 years ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
763
views
Answer:
A: using GENESIS R package with non-human species
3.7 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
869
views
Answer:
A: Association testing model in GENESIS
3.7 years ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
1.1k
views
Answer:
A: GENESIS multiple gds files
3.8 years ago
Stephanie M. Gogarten
▴ 870
1
vote
0
replies
1.3k
views
Answer:
A: How to imports DS field from VCF files with SeqArray seqVCF2GDS()
3.8 years ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
1.4k
views
Comment:
C: Why is assocTestMM running with only a fraction of SNPs in genotype data?
4.0 years ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
1.5k
views
Comment:
C: GWASTools for analyzing Canine_HD genotyping data
4.1 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
1.5k
views
Comment:
C: Question: GENESIS: assocTestSingle() is not giving any output; guessing that it
4.1 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
1.5k
views
Comment:
C: Question: GENESIS: assocTestSingle() is not giving any output; guessing that it
4.1 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
1.5k
views
Comment:
C: Question: GENESIS: assocTestSingle() is not giving any output; guessing that it
4.1 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
1.5k
views
Comment:
C: Question: GENESIS: assocTestSingle() is not giving any output; guessing that it
4.1 years ago
Stephanie M. Gogarten
▴ 870
1
vote
0
replies
633
views
Answer:
A: Does GENESIS match scan IDs for genotype and phenotype data?
4.2 years ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
1.4k
views
Answer:
A: SeqVarData Error sample.id in sampleData does not match GDS file
4.2 years ago
Stephanie M. Gogarten
▴ 870
2
votes
1
reply
782
views
Why did the Wald test disappear from GENESIS?
genesis
4.4 years ago
Stephanie M. Gogarten
▴ 870
1
vote
0
replies
782
views
Answer:
A: Why did the Wald test disappear from GENESIS?
4.4 years ago
Stephanie M. Gogarten
▴ 870
1
vote
1
reply
1.0k
views
Comment:
C: Sporadic missingness with admixmmap
4.5 years ago
Stephanie M. Gogarten
▴ 870
1
vote
0
replies
959
views
Answer:
A: Calculating the z score from wald test association results in GENESIS
4.5 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
1.3k
views
Comment:
C: Interpreting the output of score test using GENESIS
4.5 years ago
Stephanie M. Gogarten
▴ 870
2
votes
2
replies
1.3k
views
Answer:
A: Interpreting the output of score test using GENESIS
4.5 years ago
Stephanie M. Gogarten
▴ 870
1
vote
1
reply
1.0k
views
Answer:
A: Sporadic missingness with admixmmap
4.5 years ago
Stephanie M. Gogarten
▴ 870
1
vote
1
reply
1.1k
views
Answer:
A: seqVCF2GDS Error Converting VCF to GDS file
4.6 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
1.1k
views
Answer:
A: GENESIS: ascertainment in GWAS
4.7 years ago
Stephanie M. Gogarten
▴ 870
1
vote
1
reply
1.4k
views
Comment:
C: sample ids not matching when creating SeqVarData object
4.7 years ago
Stephanie M. Gogarten
▴ 870
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