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Answer: Answer: Different number of exons in reference genome affects DEXSeq analysis
4 hours ago Alejandro Reyes ★ 1.9k
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0
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50
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Answer: Answer: Adding columns to DEXSeqResults object
4 hours ago Alejandro Reyes ★ 1.9k
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0
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630
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Comment: Comment: RNAseq (Deseq2 and Dexseq2) analysis on two time points with expected same effec
7 months ago Alejandro Reyes ★ 1.9k
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0
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812
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Comment: Comment: DEXSeq output included non-exist exons
9 months ago Alejandro Reyes ★ 1.9k
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1
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812
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Comment: Comment: DEXSeq output included non-exist exons
9 months ago Alejandro Reyes ★ 1.9k
2
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2
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1.7k
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Answer: Answer: Scaling DEXSeq estimateDispersions for large datasets, glmGamPoi?
13 months ago Alejandro Reyes ★ 1.9k
0
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0
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894
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Comment: Comment: DEXseq batch removal
18 months ago Alejandro Reyes ★ 1.9k
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2
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894
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Answer: Answer: DEXseq batch removal
18 months ago Alejandro Reyes ★ 1.9k
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1
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802
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Comment: Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
20 months ago Alejandro Reyes ★ 1.9k
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0
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3.0k
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Comment: Comment: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
24 months ago Alejandro Reyes ★ 1.9k
0
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1
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3.0k
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Comment: Comment: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
24 months ago Alejandro Reyes ★ 1.9k
1
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0
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628
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Answer: Answer: Increased number of exons in DEXSeq
2.1 years ago Alejandro Reyes ★ 1.9k
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0
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1.1k
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Comment: Comment: DTU using DEXSeq (time series data with condition factor)
2.2 years ago Alejandro Reyes ★ 1.9k
0
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0
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822
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Comment: Comment: DEXSeq prepare annotation script throws "object has no attribute 'next'" for Ens
2.2 years ago Alejandro Reyes ★ 1.9k
1
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1
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846
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Answer: Answer: Normalizing exonic reads and then log transforming or variance stabilising
2.2 years ago Alejandro Reyes ★ 1.9k
0
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1
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1.2k
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Comment: Comment: Fold Change for rnaseq DTU
2.6 years ago Alejandro Reyes ★ 1.9k
0
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0
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1.9k
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Comment: Comment: DEXSeq: What's the best way to map an exon counting bin, e.g. E002 to exon(s) or
3.0 years ago Alejandro Reyes ★ 1.9k
0
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0
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1.5k
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Comment: Comment: Differential Transcript Usage: complex factorial design
3.0 years ago Alejandro Reyes ★ 1.9k
3
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1
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1.9k
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Answer: Answer: DEXSeq: What's the best way to map an exon counting bin, e.g. E002 to exon(s) or
3.0 years ago Alejandro Reyes ★ 1.9k
0
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1
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1.5k
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Answer: Answer: Differential Transcript Usage: complex factorial design
3.0 years ago Alejandro Reyes ★ 1.9k
2
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1
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1.0k
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Answer: Answer: How to better run DEXSeq with a very large number of samples?
3.1 years ago Alejandro Reyes ★ 1.9k
1
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0
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964
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Comment: Comment: Differential exon usage analysis using DEXSeq for mRNA and lncRNA separately
3.3 years ago Alejandro Reyes ★ 1.9k
0
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1
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1.6k
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Comment: C: Calculating per-exon PSI from DEXSeq
3.7 years ago Alejandro Reyes ★ 1.9k
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1
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1.6k
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Comment: C: Calculating per-exon PSI from DEXSeq
3.7 years ago Alejandro Reyes ★ 1.9k
1
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1
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1.2k
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Answer: A: Detailed explanations for DEXSeq output columns
3.8 years ago Alejandro Reyes ★ 1.9k
0
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1
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852
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Comment: C: DEXSeq HTML report Error
3.8 years ago Alejandro Reyes ★ 1.9k
1
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1
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1.5k
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Answer: A: DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
4.0 years ago Alejandro Reyes ★ 1.9k
0
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0
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1.3k
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Comment: C: DEXSeq with large(ish) number of samples
4.0 years ago Alejandro Reyes ★ 1.9k
0
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0
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994
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Comment: C: DEXseq conversion of GTF to GFF creating incorrect exon coordinates
4.0 years ago Alejandro Reyes ★ 1.9k
1
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1
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1.3k
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Answer: C: DEXSeq with large(ish) number of samples
4.0 years ago Alejandro Reyes ★ 1.9k
1
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1
reply
1.6k
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Answer: C: Calculation of Log2 fold change in DEXSeq
4.0 years ago Alejandro Reyes ★ 1.9k
1
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1
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637
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Answer: A: How to set model formulae in DEXSeq when 2 shRNAs were used to target a same gen
4.0 years ago Alejandro Reyes ★ 1.9k
0
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0
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1.1k
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Comment: C: DEXSeq Splicing Result with incomplete lines between exons
4.2 years ago Alejandro Reyes ★ 1.9k
0
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1
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1.1k
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Comment: C: DEXSeq Splicing Result with incomplete lines between exons
4.2 years ago Alejandro Reyes ★ 1.9k
0
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1
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2.5k
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Comment: C: featureCount error - cannot identify gene_id
4.4 years ago Alejandro Reyes ★ 1.9k
0
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0
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559
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Comment: C: error in DEXSeq estimateExonFoldChanges
4.4 years ago Alejandro Reyes ★ 1.9k
0
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1
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1.0k
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Answer: A: Issue/Error with DEXSeq design formulae in testForDEU function
4.6 years ago Alejandro Reyes ★ 1.9k
2
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0
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833
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Answer: A: Print Differentially Expressed Exons From Dexseq Results
4.9 years ago Alejandro Reyes ★ 1.9k
0
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1
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1.6k
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Comment: C: DEXSeq dispersion outlier
4.9 years ago Alejandro Reyes ★ 1.9k
0
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0
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991
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Comment: C: null model and DEXSeqDataSet object in DEXSEQ
5.0 years ago Alejandro Reyes ★ 1.9k
1
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1
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991
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Answer: C: null model and DEXSeqDataSet object in DEXSEQ
5.0 years ago Alejandro Reyes ★ 1.9k
0
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1
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1.6k
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Answer: C: DEXSeq dispersion outlier
5.0 years ago Alejandro Reyes ★ 1.9k
0
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0
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1.2k
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Comment: C: estimateDispersions calculation for > 500,000 exons for 2 conditions taking fore
5.0 years ago Alejandro Reyes ★ 1.9k
1
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0
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1.2k
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Comment: C: estimateDispersions calculation for > 500,000 exons for 2 conditions taking fore
5.0 years ago Alejandro Reyes ★ 1.9k
0
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1
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1.2k
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Comment: C: estimateDispersions calculation for > 500,000 exons for 2 conditions taking fore
5.0 years ago Alejandro Reyes ★ 1.9k
1
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1
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1.3k
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Answer: A: How to install DEXSeq on R 3.4.4
5.0 years ago Alejandro Reyes ★ 1.9k
0
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0
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1.9k
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Answer: A: DEXSeq - counts from paired reads and unpaired singletons
5.0 years ago Alejandro Reyes ★ 1.9k
0
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0
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794
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Comment: C: DEXSeq With Reduced Annotations
5.1 years ago Alejandro Reyes ★ 1.9k
0
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0
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741
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Answer: A: DEXSeq: controlling for cell composition
5.2 years ago Alejandro Reyes ★ 1.9k
0
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0
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877
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Answer: A: Can DEXseq be used for splicing QTL analysis?
5.2 years ago Alejandro Reyes ★ 1.9k
326 results • Page 1 of 7
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