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Answer:
Answer: Different number of exons in reference genome affects DEXSeq analysis
13 days ago
Alejandro Reyes
★ 1.9k
0
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0
replies
145
views
Answer:
Answer: Adding columns to DEXSeqResults object
13 days ago
Alejandro Reyes
★ 1.9k
2
votes
2
replies
1.8k
views
Answer:
Answer: Scaling DEXSeq estimateDispersions for large datasets, glmGamPoi?
14 months ago
Alejandro Reyes
★ 1.9k
1
vote
2
replies
923
views
Answer:
Answer: DEXseq batch removal
18 months ago
Alejandro Reyes
★ 1.9k
1
vote
0
replies
647
views
Answer:
Answer: Increased number of exons in DEXSeq
2.1 years ago
Alejandro Reyes
★ 1.9k
1
vote
1
reply
862
views
Answer:
Answer: Normalizing exonic reads and then log transforming or variance stabilising
2.3 years ago
Alejandro Reyes
★ 1.9k
3
votes
1
reply
1.9k
views
Answer:
Answer: DEXSeq: What's the best way to map an exon counting bin, e.g. E002 to exon(s) or
3.0 years ago
Alejandro Reyes
★ 1.9k
0
votes
1
reply
1.5k
views
Answer:
Answer: Differential Transcript Usage: complex factorial design
3.1 years ago
Alejandro Reyes
★ 1.9k
2
votes
1
reply
1.0k
views
Answer:
Answer: How to better run DEXSeq with a very large number of samples?
3.2 years ago
Alejandro Reyes
★ 1.9k
1
vote
1
reply
1.2k
views
Answer:
A: Detailed explanations for DEXSeq output columns
3.8 years ago
Alejandro Reyes
★ 1.9k
1
vote
1
reply
1.5k
views
Answer:
A: DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
4.0 years ago
Alejandro Reyes
★ 1.9k
1
vote
1
reply
1.3k
views
Answer:
C: DEXSeq with large(ish) number of samples
4.0 years ago
Alejandro Reyes
★ 1.9k
1
vote
1
reply
1.7k
views
Answer:
C: Calculation of Log2 fold change in DEXSeq
4.1 years ago
Alejandro Reyes
★ 1.9k
1
vote
1
reply
645
views
Answer:
A: How to set model formulae in DEXSeq when 2 shRNAs were used to target a same gen
4.1 years ago
Alejandro Reyes
★ 1.9k
0
votes
1
reply
1.0k
views
Answer:
A: Issue/Error with DEXSeq design formulae in testForDEU function
4.7 years ago
Alejandro Reyes
★ 1.9k
2
votes
0
replies
845
views
Answer:
A: Print Differentially Expressed Exons From Dexseq Results
4.9 years ago
Alejandro Reyes
★ 1.9k
2
votes
1
reply
1.0k
views
Answer:
C: null model and DEXSeqDataSet object in DEXSEQ
5.0 years ago
Alejandro Reyes
★ 1.9k
0
votes
1
reply
1.6k
views
Answer:
C: DEXSeq dispersion outlier
5.0 years ago
Alejandro Reyes
★ 1.9k
1
vote
1
reply
1.3k
views
Answer:
A: How to install DEXSeq on R 3.4.4
5.0 years ago
Alejandro Reyes
★ 1.9k
0
votes
0
replies
1.9k
views
Answer:
A: DEXSeq - counts from paired reads and unpaired singletons
5.0 years ago
Alejandro Reyes
★ 1.9k
0
votes
0
replies
744
views
Answer:
A: DEXSeq: controlling for cell composition
5.3 years ago
Alejandro Reyes
★ 1.9k
0
votes
0
replies
889
views
Answer:
A: Can DEXseq be used for splicing QTL analysis?
5.3 years ago
Alejandro Reyes
★ 1.9k
2
votes
1
reply
2.2k
views
Answer:
A: Kallisto output with DEXSeq
5.6 years ago
Alejandro Reyes
★ 1.9k
2
votes
0
replies
1.4k
views
Answer:
A: DEXSeq and DRIMSeq on paired samples?
5.6 years ago
Alejandro Reyes
★ 1.9k
0
votes
0
replies
646
views
Answer:
A: Dexseq output interpretation
5.8 years ago
Alejandro Reyes
★ 1.9k
0
votes
1
reply
1.6k
views
Answer:
A: DEXSeq: Error running dexseq_prepare_annotation.py
5.8 years ago
Alejandro Reyes
★ 1.9k
1
vote
0
replies
669
views
Answer:
A: DEXseq with technical replicates
5.8 years ago
Alejandro Reyes
★ 1.9k
1
vote
1
reply
1.3k
views
Answer:
A: DEXSeq time course design
5.9 years ago
Alejandro Reyes
★ 1.9k
0
votes
1
reply
1.0k
views
Answer:
A: Interaction effect sizes from DEXseq
6.0 years ago
Alejandro Reyes
★ 1.9k
1
vote
1
reply
1.4k
views
Answer:
A: DEXSeqHTML and biomart object
6.4 years ago
Alejandro Reyes
★ 1.9k
2
votes
1
reply
881
views
Answer:
A: Algorithm behind splice=TRUE in DEXSeq
6.6 years ago
Alejandro Reyes
★ 1.9k
0
votes
0
replies
1.2k
views
Answer:
A: DEXSeqHTML Error on condition variable
6.7 years ago
Alejandro Reyes
★ 1.9k
1
vote
1
reply
2.4k
views
Answer:
A: Sample label swap in HTML results
6.8 years ago
Alejandro Reyes
★ 1.9k
1
vote
2
replies
1.8k
views
Answer:
A: Is possible to apply 'svaseq' with 'DEXSeq' design in order to remove unknown ba
7.2 years ago
Alejandro Reyes
★ 1.9k
0
votes
1
reply
1.4k
views
Answer:
A: No significant hits!
7.8 years ago
Alejandro Reyes
★ 1.9k
1
vote
0
replies
1.1k
views
Answer:
A: DEXseq for alternate promoter usage
7.9 years ago
Alejandro Reyes
★ 1.9k
1
vote
0
replies
1.2k
views
Answer:
A: DEXSeq. Error: could not find function "DEXSeqDataSetFromHTSeq"
8.0 years ago
Alejandro Reyes
★ 1.9k
2
votes
1
reply
3.5k
views
Answer:
A: DEXSeq Error: unable to find an inherited method for function ‘mcols’ for signat
8.1 years ago
Alejandro Reyes
★ 1.9k
1
vote
1
reply
1.4k
views
Answer:
A: DEXSeq: large pvalue for expected differentially expressed exons
8.1 years ago
Alejandro Reyes
★ 1.9k
0
votes
0
replies
3.7k
views
Answer:
A: DEXSeq Error in estimateExonFoldChanges: the matrix is either rank-deficient or
8.1 years ago
Alejandro Reyes
★ 1.9k
1
vote
1
reply
1.1k
views
Answer:
A: DEXSeq ignore non-coding regions
8.2 years ago
Alejandro Reyes
★ 1.9k
0
votes
1
reply
1.3k
views
Answer:
A: DEXSeq on time series - how to set up models
8.2 years ago
Alejandro Reyes
★ 1.9k
0
votes
0
replies
1.1k
views
Answer:
A: DEXSeq estimateExonFoldChanges breaks samples' names and counts relation
8.3 years ago
Alejandro Reyes
★ 1.9k
2
votes
2
replies
1.5k
views
Answer:
A: DEXSeq error upon executing testForDEU()
8.3 years ago
Alejandro Reyes
★ 1.9k
0
votes
1
reply
1.9k
views
Answer:
A: DEXSeq: dexseq_count.py - Failure parsing GFF attribute line
8.3 years ago
Alejandro Reyes
★ 1.9k
0
votes
0
replies
2.5k
views
Answer:
A: NA in padj in the DEXSeq package
8.3 years ago
Alejandro Reyes
★ 1.9k
0
votes
1
reply
2.1k
views
Answer:
A: Error in exp(alleffects) : non-numeric argument to mathematical function
8.4 years ago
Alejandro Reyes
★ 1.9k
0
votes
1
reply
1.5k
views
Answer:
A: DEXSeq exon usage values in result table
8.4 years ago
Alejandro Reyes
★ 1.9k
0
votes
0
replies
1.8k
views
Answer:
A: DEXSeqDataSet example code
8.4 years ago
Alejandro Reyes
★ 1.9k
2
votes
1
reply
1.6k
views
Answer:
A: DEXSeq: DEXSeqHTML, plotDEXSeq and interaction tests
8.4 years ago
Alejandro Reyes
★ 1.9k
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