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Comment: Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
3 months ago Guangchuang Yu ★ 1.2k
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1
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1.2k
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Comment: Comment: plot enrichment results
12 months ago Guangchuang Yu ★ 1.2k
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1
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1.2k
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Comment: Comment: plot enrichment results
12 months ago Guangchuang Yu ★ 1.2k
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1.8k
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Comment: Comment: Treeplot by enrichplot
21 months ago Guangchuang Yu ★ 1.2k
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3.5k
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Answer: Answer: how to color specific node or gene symbol from cnetplot ?
23 months ago Guangchuang Yu ★ 1.2k
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0
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1.6k
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Answer: Answer: Plot terms with a NES < 0 GSEA results from gseGO
2.3 years ago Guangchuang Yu ★ 1.2k
1
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1
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1.2k
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Answer: A: How can I use 'geom_taxalink()' with the circular layout in the 'ggtree' package
4.0 years ago Guangchuang Yu ★ 1.2k
0
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1
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2.7k
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Answer: A: Adding Enrichresults for creating plot
4.3 years ago Guangchuang Yu ★ 1.2k
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0
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4.2k
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Answer: A: How to modify label text size/line width in cnetplot (ReactomePA/clusterProfiler
4.3 years ago Guangchuang Yu ★ 1.2k
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3.6k
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Comment: C: Unable to reroot RAxML tree with ggtree
4.6 years ago Guangchuang Yu ★ 1.2k
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2.2k
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Answer: A: DO.db is missing after repeated installations-ReactomePA-ClusterProfiler-DOSE
4.7 years ago Guangchuang Yu ★ 1.2k
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3.4k
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Comment: C: gseDO function input
4.8 years ago Guangchuang Yu ★ 1.2k
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0
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1.5k
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Answer: C: Is it possible to run gseDO for mouse 'org.Mm.eg.db'
4.8 years ago Guangchuang Yu ★ 1.2k
0
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2.5k
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Comment: C: clusterProfiler: BgRatio N value does not equal set gene universe size
4.8 years ago Guangchuang Yu ★ 1.2k
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3
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2.5k
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Answer: A: clusterProfiler: BgRatio N value does not equal set gene universe size
4.8 years ago Guangchuang Yu ★ 1.2k
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1.1k
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Comment: C: how to add background gene set to enrichMesh
5.0 years ago Guangchuang Yu ★ 1.2k
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0
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1.5k
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Answer: A: Highligting specific tips/taxa with asterisk using ggtree
5.2 years ago Guangchuang Yu ★ 1.2k
1
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2
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3.6k
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Answer: A: error in keytype performing "enrichGO" from clusterprofiler
5.4 years ago Guangchuang Yu ★ 1.2k
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0
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1.1k
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Answer: C: How to change the siez of lables in heatmap
5.5 years ago Guangchuang Yu ★ 1.2k
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1
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3.9k
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Answer: A: kegg enrichment using clusterProfiler could not read KEGG Orthology IDs
5.5 years ago Guangchuang Yu ★ 1.2k
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1
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1.0k
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Comment: C: MeSH enrichment analysis with "meshes"
5.5 years ago Guangchuang Yu ★ 1.2k
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1.0k
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Comment: C: Gene similarity by GOSemSim
5.6 years ago Guangchuang Yu ★ 1.2k
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1
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1.3k
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Comment: C: how to get frequencies from plotDistToTSS
5.6 years ago Guangchuang Yu ★ 1.2k
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0
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1.2k
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Comment: C: Semantic similarity across entire MeSH tree in meshes pkg
5.6 years ago Guangchuang Yu ★ 1.2k
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1
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3.6k
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Comment: C: How to convert data frame obtained with enrichPathway back to an enrichPathway r
5.6 years ago Guangchuang Yu ★ 1.2k
1
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1
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3.6k
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Answer: A: How to convert data frame obtained with enrichPathway back to an enrichPathway r
5.6 years ago Guangchuang Yu ★ 1.2k
0
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1
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2.5k
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Comment: C: How can I read in BEAST nexus tree with treeio and get all node values
5.6 years ago Guangchuang Yu ★ 1.2k
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0
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2.5k
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Comment: C: How can I read in BEAST nexus tree with treeio and get all node values
5.6 years ago Guangchuang Yu ★ 1.2k
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1
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1.3k
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Answer: A: (GOSemSim package) secondary GO terms generating NA values
5.7 years ago Guangchuang Yu ★ 1.2k
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0
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2.6k
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Answer: A: Different results come from GO enrichment analysis with ENSEMBL ID and ENTREZID
5.7 years ago Guangchuang Yu ★ 1.2k
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0
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4.8k
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Comment: C: No gene set have size > 10 ...
5.8 years ago Guangchuang Yu ★ 1.2k
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1
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4.8k
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Comment: C: No gene set have size > 10 ...
5.8 years ago Guangchuang Yu ★ 1.2k
1
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1
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1.6k
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Answer: A: How to do functional enrichment analysis for only promoter regions using ChIPsee
5.9 years ago Guangchuang Yu ★ 1.2k
0
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1
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4.5k
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Answer: A: Understanding clusterprofiler enrichment results
6.0 years ago Guangchuang Yu ★ 1.2k
0
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0
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1.8k
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Comment: C: How to save changes on a phylogeneitc tree using ggtree and treeio?
6.1 years ago Guangchuang Yu ★ 1.2k
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0
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2.4k
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Comment: C: Error Installing Cluster Profiler
6.1 years ago Guangchuang Yu ★ 1.2k
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0
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1.1k
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Comment: C: How does vennplot() within Chipseeker define overlaps?
6.1 years ago Guangchuang Yu ★ 1.2k
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0
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1.2k
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Comment: C: GO similarity by GOSemSim
6.1 years ago Guangchuang Yu ★ 1.2k
0
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0
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2.0k
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Comment: C: ReactomePA / Reactome: Crash when plotting
6.1 years ago Guangchuang Yu ★ 1.2k
0
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2
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2.0k
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Comment: C: ReactomePA / Reactome: Crash when plotting
6.1 years ago Guangchuang Yu ★ 1.2k
0
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0
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1.4k
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Comment: C: Remove highly similar terms from a GO gene set enrichment analysis
6.1 years ago Guangchuang Yu ★ 1.2k
0
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1
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2.0k
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Comment: C: ReactomePA / Reactome: Crash when plotting
6.1 years ago Guangchuang Yu ★ 1.2k
0
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2
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6.1k
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Comment: C: clusterProfiler: exclude pathways and add gene names to cnetplot
6.2 years ago Guangchuang Yu ★ 1.2k
0
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1
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6.1k
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Answer: A: clusterProfiler: exclude pathways and add gene names to cnetplot
6.2 years ago Guangchuang Yu ★ 1.2k
1
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1
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2.3k
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Comment: C: ReactomePA / Reactome: Extraction of genes within a term
6.2 years ago Guangchuang Yu ★ 1.2k
0
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0
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10k
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Answer: A: Cannot install clusterProfiler
6.2 years ago Guangchuang Yu ★ 1.2k
1
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1
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2.3k
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Answer: A: ReactomePA / Reactome: Extraction of genes within a term
6.2 years ago Guangchuang Yu ★ 1.2k
1
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0
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2.5k
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Comment: C: Is there a way to set the ClusterProfiler color gradient?
6.2 years ago Guangchuang Yu ★ 1.2k
0
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0
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839
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Answer: A: How to arrive at an optimal value for attribute level in groupGO or enrichGO in
6.3 years ago Guangchuang Yu ★ 1.2k
0
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0
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731
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Answer: A: Error in getGenomicAnnoStat(peak.gr) : object 'plab' not found
6.3 years ago Guangchuang Yu ★ 1.2k
315 results • Page 1 of 7
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