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0
votes
1
reply
2.2k
views
Answer:
A: p-values in Reactome and ReactomePA
6.4 years ago
Guangchuang Yu
★ 1.2k
1
vote
0
replies
1.6k
views
Answer:
A: enrichGO (clusterProfiler) produces different results
6.5 years ago
Guangchuang Yu
★ 1.2k
1
vote
1
reply
2.0k
views
Answer:
A: clusterProfiler for Zebrafish (Danio rerio)
6.5 years ago
Guangchuang Yu
★ 1.2k
2
votes
1
reply
4.4k
views
Answer:
A: Clusterprofiler - MSigDB gene set analysis - Updated
6.5 years ago
Guangchuang Yu
★ 1.2k
1
vote
1
reply
2.2k
views
Comment:
C: ReactomePA - Pathway analysis for DE porcine genes
6.5 years ago
Guangchuang Yu
★ 1.2k
1
vote
1
reply
2.2k
views
Answer:
A: ReactomePA - Pathway analysis for DE porcine genes
6.5 years ago
Guangchuang Yu
★ 1.2k
0
votes
0
replies
2.2k
views
Comment:
C: "input object should be a named list" error in ChIPseeker
6.5 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
2.2k
views
Answer:
A: "input object should be a named list" error in ChIPseeker
6.5 years ago
Guangchuang Yu
★ 1.2k
1
vote
0
replies
2.5k
views
Comment:
C: Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not
6.5 years ago
Guangchuang Yu
★ 1.2k
2
votes
1
reply
2.5k
views
Answer:
A: Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not
6.6 years ago
Guangchuang Yu
★ 1.2k
0
votes
0
replies
1.7k
views
Answer:
A: tip_glom and annotations?
6.6 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
1.9k
views
Answer:
A: merging gseaResult objects
6.6 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
1.7k
views
Answer:
A: Reference for edge and node properties suitable for enrichMap{DOSE}
6.6 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
3.1k
views
Comment:
C: ChIPseeker question: provide custom csAnno to plots
6.6 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
3.1k
views
Comment:
C: ChIPseeker question: provide custom csAnno to plots
6.6 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
3.1k
views
Comment:
C: ChIPseeker question: provide custom csAnno to plots
6.6 years ago
Guangchuang Yu
★ 1.2k
0
votes
0
replies
2.9k
views
Answer:
A: custom annotation in annotatePeak
6.7 years ago
Guangchuang Yu
★ 1.2k
1
vote
0
replies
2.4k
views
Comment:
C: ChIPSeeker enrichPeakOverlap external dataset downloads
6.7 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
2.0k
views
Answer:
A: enrichGO returning NA
6.7 years ago
Guangchuang Yu
★ 1.2k
1
vote
1
reply
2.4k
views
Comment:
C: ChIPSeeker enrichPeakOverlap external dataset downloads
6.7 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
5.3k
views
Answer:
A: failing to install the package clusterProfiler in R (version 3.4.1)
6.7 years ago
Guangchuang Yu
★ 1.2k
1
vote
1
reply
2.4k
views
Comment:
C: ChIPSeeker enrichPeakOverlap external dataset downloads
6.7 years ago
Guangchuang Yu
★ 1.2k
2
votes
1
reply
2.4k
views
Answer:
A: ChIPSeeker enrichPeakOverlap external dataset downloads
6.7 years ago
Guangchuang Yu
★ 1.2k
0
votes
2
replies
2.0k
views
Answer:
A: enrichGO returning NA
6.7 years ago
Guangchuang Yu
★ 1.2k
3
votes
2
replies
4.1k
views
Answer:
A: Function simplify fails when argument ont is set to "ALL" in enrichGO function i
6.7 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
2.7k
views
Comment:
C: clusterProfiler compareCluster enrichDAVID
6.8 years ago
Guangchuang Yu
★ 1.2k
0
votes
0
replies
2.4k
views
Answer:
A: how to define the downstream range in ChIPseeker
6.8 years ago
Guangchuang Yu
★ 1.2k
1
vote
1
reply
3.8k
views
Answer:
A: enrichGO from DOSE, clusterprofiler is returning empty result.
6.8 years ago
Guangchuang Yu
★ 1.2k
2
votes
1
reply
5.4k
views
Answer:
A: Pathway analysis using ReactomePA::enrichPathway(): doubts about minGSSize and m
6.8 years ago
Guangchuang Yu
★ 1.2k
1
vote
1
reply
2.9k
views
Answer:
A: ChIPseeker peak annotation tssRegion
6.8 years ago
Guangchuang Yu
★ 1.2k
0
votes
0
replies
1.4k
views
Answer:
A: clusterprofiler enrichment analysis geneList argument: duplicate 'row.names' (en
6.8 years ago
Guangchuang Yu
★ 1.2k
0
votes
0
replies
7.7k
views
Answer:
A: question on GO analysis using clusterProfiler
6.8 years ago
Guangchuang Yu
★ 1.2k
3
votes
0
replies
1.4k
views
Answer:
A: chipseeker annotation of focused genic regions
6.8 years ago
Guangchuang Yu
★ 1.2k
2
votes
0
replies
6.4k
views
Answer:
A: clusterProfiler - Non model organism
6.9 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
2.1k
views
Comment:
C: significance of ChIPseq peak overlap
6.9 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
1.6k
views
Comment:
C: GO analysis under-represented genes and over-represented (enrichment) down-regul
6.9 years ago
Guangchuang Yu
★ 1.2k
1
vote
0
replies
1.3k
views
Comment:
C: clusterProfiler enrichGO under-represented term
6.9 years ago
Guangchuang Yu
★ 1.2k
0
votes
0
replies
2.0k
views
Answer:
A: ggtree: time-scaled tree s
7.0 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
3.9k
views
Answer:
A: clusterProfiler: different runs return different results for gse functions
7.0 years ago
Guangchuang Yu
★ 1.2k
0
votes
0
replies
3.3k
views
Comment:
C: clusterProfiler - interpretation of enrichMap
7.1 years ago
Guangchuang Yu
★ 1.2k
1
vote
2
replies
3.5k
views
Answer:
A: gseDO function input
7.1 years ago
Guangchuang Yu
★ 1.2k
0
votes
0
replies
2.8k
views
Comment:
C: eroor mssage using gseKEGG
7.1 years ago
Guangchuang Yu
★ 1.2k
0
votes
0
replies
3.3k
views
Comment:
C: #clusterProfiler# KEGG enrichment with non-reference species
7.1 years ago
Guangchuang Yu
★ 1.2k
0
votes
0
replies
2.9k
views
Answer:
A: ClusterProfiler dotplot formatting
7.2 years ago
Guangchuang Yu
★ 1.2k
0
votes
0
replies
4.7k
views
Comment:
C: odd results "No enrichment found in any of gene cluster"
7.2 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
4.7k
views
Comment:
C: odd results "No enrichment found in any of gene cluster"
7.2 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
4.7k
views
Answer:
A: odd results "No enrichment found in any of gene cluster"
7.2 years ago
Guangchuang Yu
★ 1.2k
0
votes
0
replies
1.6k
views
Answer:
A: Chip-seq peak annotation [Chipseeker]
7.2 years ago
Guangchuang Yu
★ 1.2k
0
votes
0
replies
1.5k
views
Comment:
C: GSEA threshold question
7.2 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
14k
views
Comment:
C: GeneList issue ClusterProfiler
7.3 years ago
Guangchuang Yu
★ 1.2k
315 results • Page
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