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Comment: Comment: statistics : edger or DESeq2 to asses the differential binding using the averag
5 months ago Yunshun Chen ▴ 780
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439
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Comment: Comment: statistics : edger or DESeq2 to asses the differential binding using the averag
5 months ago Yunshun Chen ▴ 780
0
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2
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439
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Answer: Answer: statistics : edger or DESeq2 to asses the differential binding using the averag
5 months ago Yunshun Chen ▴ 780
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0
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585
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Answer: Answer: filterbyexp() in edgeR
13 months ago Yunshun Chen ▴ 780
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0
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574
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Job: Postdoctoral Scientist in Statistical Bioinformatics, WEHI, Melbourne, Australia
JobPosting
17 months ago Yunshun Chen ▴ 780
1
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1
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2.3k
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Answer: Answer: differential expression for Single-cell RNAseq data using edgeR
20 months ago Yunshun Chen ▴ 780
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0
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519
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Comment: Comment: Confusion using edgeR and spline-fitted data
21 months ago Yunshun Chen ▴ 780
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1
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519
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Answer: Answer: Confusion using edgeR and spline-fitted data
21 months ago Yunshun Chen ▴ 780
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0
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407
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Answer: Answer: edgeR & blocking with complex experimental design
22 months ago Yunshun Chen ▴ 780
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0
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1.0k
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Answer: Answer: How can I get a list of the DE genes from edgeR?
2.1 years ago Yunshun Chen ▴ 780
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1
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480
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Answer: Answer: Help creating a paired sample design matrix in edgeR
2.1 years ago Yunshun Chen ▴ 780
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0
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1.5k
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Comment: Comment: Calculation of logFC in edgeR
2.2 years ago Yunshun Chen ▴ 780
2
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1
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1.5k
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Answer: Answer: Calculation of logFC in edgeR
2.2 years ago Yunshun Chen ▴ 780
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1
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746
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Comment: Comment: edgeR model matrix with 3 factors and interactions
2.2 years ago Yunshun Chen ▴ 780
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1
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746
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Comment: Comment: edgeR model matrix with 3 factors and interactions
2.2 years ago Yunshun Chen ▴ 780
1
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1
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538
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Answer: Answer: Question regarding lib.sizes when using glmQLFit
2.2 years ago Yunshun Chen ▴ 780
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0
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415
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Answer: Comment: Additive Model for Variable Adjustment in edgeR
2.3 years ago Yunshun Chen ▴ 780
3
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1
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1.2k
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Answer: Answer: edgeR supports continuous covariates?
2.4 years ago Yunshun Chen ▴ 780
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0
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1.4k
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Comment: C: EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
2.4 years ago Yunshun Chen ▴ 780
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1
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1.4k
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Comment: C: EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
2.4 years ago Yunshun Chen ▴ 780
0
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1
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1.4k
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Comment: C: EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
2.4 years ago Yunshun Chen ▴ 780
2
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1
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1.4k
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Answer: A: EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
2.4 years ago Yunshun Chen ▴ 780
2
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0
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4.5k
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Comment: C: how to understand cpm=1 and how filterByExpr works?
2.6 years ago Yunshun Chen ▴ 780
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0
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1.0k
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Answer: A: "Error in xy.coords(x, y, setLab = FALSE) : 'x' and 'y' lengths differ" using gl
2.7 years ago Yunshun Chen ▴ 780
1
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0
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285
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Answer: A: edgeR DGEList model matrix and experiment design
3.0 years ago Yunshun Chen ▴ 780
1
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0
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895
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Answer: A: RNAseq analysis with edgeR-interaction terms and comparison within and between g
3.0 years ago Yunshun Chen ▴ 780
2
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1
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1.8k
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Answer: A: Including multiple covariates in edgeR
3.1 years ago Yunshun Chen ▴ 780
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0
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504
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Comment: C: EdgeR - How to define a group when calculating BCV
3.1 years ago Yunshun Chen ▴ 780
1
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1
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504
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Answer: A: EdgeR - How to define a group when calculating BCV
3.1 years ago Yunshun Chen ▴ 780
1
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1
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767
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Comment: C: adding "symbol" column in my differential expressed genes in EdgeR
3.4 years ago Yunshun Chen ▴ 780
0
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1
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767
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Answer: A: adding "symbol" column in my differential expressed genes in EdgeR
3.4 years ago Yunshun Chen ▴ 780
2
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0
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1.2k
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Answer: A: interpreting FC values from glmTreat, especially unshrunk log-fold-changes
3.4 years ago Yunshun Chen ▴ 780
1
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1
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399
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Answer: A: Nested Interaction in edgeR and composition bias
3.4 years ago Yunshun Chen ▴ 780
1
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0
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383
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Answer: A: EdgeR DGElist - equal counts between treatment and control incorrectly give sign
3.4 years ago Yunshun Chen ▴ 780
3
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1
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352
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Answer: A: Can't get function plotExonJunc to work?
3.5 years ago Yunshun Chen ▴ 780
5
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2
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1.0k
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Answer: A: EdgeR - Complex design - contrasts/coefficients
3.5 years ago Yunshun Chen ▴ 780
2
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1
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708
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Answer: A: is our edgeR code doing what we think it does?
3.6 years ago Yunshun Chen ▴ 780
0
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0
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1.9k
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Answer: A: edgeR DGEList and design matrix
3.6 years ago Yunshun Chen ▴ 780
2
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1
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2.5k
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Answer: A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
6.6 years ago Yunshun Chen ▴ 780
0
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1
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1.3k
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Answer: A: problems when installing edgeR
6.6 years ago Yunshun Chen ▴ 780
1
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0
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770
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Answer: A: Treat p > 1
6.8 years ago Yunshun Chen ▴ 780
1
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2
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3.6k
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Comment: C: Setting up the Design Matrix
7.2 years ago Yunshun Chen ▴ 780
2
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2
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3.6k
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Answer: A: Setting up the Design Matrix
7.2 years ago Yunshun Chen ▴ 780
2
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1
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990
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Comment: C: edgeR no residual degrees of freedom for a specific row of numbers in dispCoxRei
7.2 years ago Yunshun Chen ▴ 780
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1
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2.2k
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Comment: C: edgeR for with no Replicate
7.3 years ago Yunshun Chen ▴ 780
1
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1
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2.2k
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Answer: A: edgeR for with no Replicate
7.3 years ago Yunshun Chen ▴ 780
0
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1
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1.3k
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Answer: A: ANOVA in EdgeR
7.3 years ago Yunshun Chen ▴ 780
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0
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2.7k
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Comment: C: Different results in edgeR using simple vs GLM
7.5 years ago Yunshun Chen ▴ 780
2
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0
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2.7k
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Answer: A: Different results in edgeR using simple vs GLM
7.5 years ago Yunshun Chen ▴ 780
1
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0
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2.7k
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Comment: C: edgeR and gene filtering
7.5 years ago Yunshun Chen ▴ 780
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