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Comment: C: Setting up the Design Matrix
8.8 years ago Yunshun Chen ▴ 890
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Answer: A: Setting up the Design Matrix
8.9 years ago Yunshun Chen ▴ 890
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Comment: C: edgeR no residual degrees of freedom for a specific row of numbers in dispCoxRei
8.9 years ago Yunshun Chen ▴ 890
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Comment: C: edgeR for with no Replicate
8.9 years ago Yunshun Chen ▴ 890
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Answer: A: edgeR for with no Replicate
8.9 years ago Yunshun Chen ▴ 890
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Answer: A: ANOVA in EdgeR
9.0 years ago Yunshun Chen ▴ 890
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Comment: C: Different results in edgeR using simple vs GLM
9.1 years ago Yunshun Chen ▴ 890
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Answer: A: Different results in edgeR using simple vs GLM
9.1 years ago Yunshun Chen ▴ 890
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Comment: C: edgeR and gene filtering
9.1 years ago Yunshun Chen ▴ 890
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Comment: C: edgeR analysis of effect of treatments within time points
9.2 years ago Yunshun Chen ▴ 890
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Answer: A: negative values for trended dispersion with edgeR
9.2 years ago Yunshun Chen ▴ 890
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Answer: A: edgeR analysis of effect of treatments within time points
9.2 years ago Yunshun Chen ▴ 890
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Comment: C: edgeR glmLRT with test="F"?
9.5 years ago Yunshun Chen ▴ 890
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Comment: C: Appropriate use of the function treat of the limma package
9.7 years ago Yunshun Chen ▴ 890
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Answer: C: Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
10.1 years ago Yunshun Chen ▴ 890
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Answer: A: tagwise parameters for negative binomial distribution in edgeR
10.7 years ago Yunshun Chen ▴ 890
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Answer: A: edgeR design matrix, one group vs average of other groups
10.7 years ago Yunshun Chen ▴ 890
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Answer: A: edgeR design matrix, one group vs average of other groups
10.7 years ago Yunshun Chen ▴ 890
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Answer: A: EdgeR classic vs. glm
10.7 years ago Yunshun Chen ▴ 890
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Comment: C: Questiond about the descrepancy between edgeR and limma-voom
10.7 years ago Yunshun Chen ▴ 890
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Answer: A: edgeR: plotBCV, gof() and plotMDS, for outlier detection
10.7 years ago Yunshun Chen ▴ 890
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Questiond about the descrepancy between edgeR and limma-voom
RNASeq edgeR RNASeq edgeR
updated 10.7 years ago by ▴ 380 • written 10.7 years ago by ▴ 890
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Comment: C: Problem in limma-voom
10.7 years ago Yunshun Chen ▴ 890
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Problem in limma-voom
limma limma
updated 10.8 years ago by ▴ 380 • written 10.8 years ago by ▴ 890
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edgeR: regarding Poisson distribution and goodness of
Normalization graph edgeR Normalization graph edgeR
10.8 years ago Yunshun Chen ▴ 890
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Answer: A: limma for time course dataset 2
10.8 years ago Yunshun Chen ▴ 890
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Answer: A: limma for time course dataset 2
10.8 years ago Yunshun Chen ▴ 890
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Answer: A: limma for time course dataset 2
10.8 years ago Yunshun Chen ▴ 890
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2.9k
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Answer: A: edgeR: DE summary of decideTestsDGE
12.3 years ago Yunshun Chen ▴ 890
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