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Comment: C: Setting up the Design Matrix
10.0 years ago Yunshun Chen ▴ 900
2
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Answer: A: Setting up the Design Matrix
10.0 years ago Yunshun Chen ▴ 900
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1.9k
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Comment: C: edgeR no residual degrees of freedom for a specific row of numbers in dispCoxRei
10.0 years ago Yunshun Chen ▴ 900
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Comment: C: edgeR for with no Replicate
10.0 years ago Yunshun Chen ▴ 900
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Answer: A: edgeR for with no Replicate
10.0 years ago Yunshun Chen ▴ 900
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Answer: A: ANOVA in EdgeR
10.1 years ago Yunshun Chen ▴ 900
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Comment: C: Different results in edgeR using simple vs GLM
10.2 years ago Yunshun Chen ▴ 900
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4.3k
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Answer: A: Different results in edgeR using simple vs GLM
10.2 years ago Yunshun Chen ▴ 900
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Comment: C: edgeR and gene filtering
10.2 years ago Yunshun Chen ▴ 900
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Comment: C: edgeR analysis of effect of treatments within time points
10.3 years ago Yunshun Chen ▴ 900
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1.9k
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Answer: A: negative values for trended dispersion with edgeR
10.3 years ago Yunshun Chen ▴ 900
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2.4k
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Answer: A: edgeR analysis of effect of treatments within time points
10.3 years ago Yunshun Chen ▴ 900
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Comment: C: edgeR glmLRT with test="F"?
10.6 years ago Yunshun Chen ▴ 900
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Comment: C: Appropriate use of the function treat of the limma package
10.8 years ago Yunshun Chen ▴ 900
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Answer: C: Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
11.2 years ago Yunshun Chen ▴ 900
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Answer: A: tagwise parameters for negative binomial distribution in edgeR
11.8 years ago Yunshun Chen ▴ 900
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4.6k
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Answer: A: edgeR design matrix, one group vs average of other groups
11.8 years ago Yunshun Chen ▴ 900
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4.6k
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Answer: A: edgeR design matrix, one group vs average of other groups
11.8 years ago Yunshun Chen ▴ 900
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3.0k
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Answer: A: EdgeR classic vs. glm
11.8 years ago Yunshun Chen ▴ 900
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Comment: C: Questiond about the descrepancy between edgeR and limma-voom
11.8 years ago Yunshun Chen ▴ 900
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Answer: A: edgeR: plotBCV, gof() and plotMDS, for outlier detection
11.8 years ago Yunshun Chen ▴ 900
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3
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Questiond about the descrepancy between edgeR and limma-voom
RNASeq edgeR RNASeq edgeR
updated 11.8 years ago by ▴ 380 • written 11.8 years ago by ▴ 900
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1.8k
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Comment: C: Problem in limma-voom
11.9 years ago Yunshun Chen ▴ 900
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Problem in limma-voom
limma limma
updated 11.9 years ago by ▴ 380 • written 11.9 years ago by ▴ 900
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edgeR: regarding Poisson distribution and goodness of
Normalization graph edgeR Normalization graph edgeR
11.9 years ago Yunshun Chen ▴ 900
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Answer: A: limma for time course dataset 2
11.9 years ago Yunshun Chen ▴ 900
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1.8k
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Answer: A: limma for time course dataset 2
11.9 years ago Yunshun Chen ▴ 900
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1.8k
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Answer: A: limma for time course dataset 2
11.9 years ago Yunshun Chen ▴ 900
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1
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3.2k
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Answer: A: edgeR: DE summary of decideTestsDGE
13.4 years ago Yunshun Chen ▴ 900
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