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Comment: C: Setting up the Design Matrix
10.1 years ago Yunshun Chen ▴ 900
2
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Answer: A: Setting up the Design Matrix
10.1 years ago Yunshun Chen ▴ 900
2
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Comment: C: edgeR no residual degrees of freedom for a specific row of numbers in dispCoxRei
10.1 years ago Yunshun Chen ▴ 900
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3.5k
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Comment: C: edgeR for with no Replicate
10.2 years ago Yunshun Chen ▴ 900
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3.5k
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Answer: A: edgeR for with no Replicate
10.2 years ago Yunshun Chen ▴ 900
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Answer: A: ANOVA in EdgeR
10.3 years ago Yunshun Chen ▴ 900
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4.4k
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Comment: C: Different results in edgeR using simple vs GLM
10.4 years ago Yunshun Chen ▴ 900
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4.4k
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Answer: A: Different results in edgeR using simple vs GLM
10.4 years ago Yunshun Chen ▴ 900
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Comment: C: edgeR and gene filtering
10.4 years ago Yunshun Chen ▴ 900
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Comment: C: edgeR analysis of effect of treatments within time points
10.4 years ago Yunshun Chen ▴ 900
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2.0k
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Answer: A: negative values for trended dispersion with edgeR
10.4 years ago Yunshun Chen ▴ 900
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2.5k
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Answer: A: edgeR analysis of effect of treatments within time points
10.5 years ago Yunshun Chen ▴ 900
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Comment: C: edgeR glmLRT with test="F"?
10.7 years ago Yunshun Chen ▴ 900
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Comment: C: Appropriate use of the function treat of the limma package
10.9 years ago Yunshun Chen ▴ 900
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Answer: C: Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
11.3 years ago Yunshun Chen ▴ 900
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Answer: A: tagwise parameters for negative binomial distribution in edgeR
11.9 years ago Yunshun Chen ▴ 900
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4.7k
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Answer: A: edgeR design matrix, one group vs average of other groups
12.0 years ago Yunshun Chen ▴ 900
1
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4.7k
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Answer: A: edgeR design matrix, one group vs average of other groups
12.0 years ago Yunshun Chen ▴ 900
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3.1k
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Answer: A: EdgeR classic vs. glm
12.0 years ago Yunshun Chen ▴ 900
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Comment: C: Questiond about the descrepancy between edgeR and limma-voom
12.0 years ago Yunshun Chen ▴ 900
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Answer: A: edgeR: plotBCV, gof() and plotMDS, for outlier detection
12.0 years ago Yunshun Chen ▴ 900
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3
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2.7k
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Questiond about the descrepancy between edgeR and limma-voom
RNASeq edgeR RNASeq edgeR
updated 12.0 years ago by ▴ 380 • written 12.0 years ago by ▴ 900
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1.9k
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Comment: C: Problem in limma-voom
12.0 years ago Yunshun Chen ▴ 900
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1.9k
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Problem in limma-voom
limma limma
updated 12.0 years ago by ▴ 380 • written 12.0 years ago by ▴ 900
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edgeR: regarding Poisson distribution and goodness of
Normalization graph edgeR Normalization graph edgeR
12.0 years ago Yunshun Chen ▴ 900
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1.9k
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Answer: A: limma for time course dataset 2
12.0 years ago Yunshun Chen ▴ 900
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1.9k
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Answer: A: limma for time course dataset 2
12.0 years ago Yunshun Chen ▴ 900
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1.9k
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Answer: A: limma for time course dataset 2
12.0 years ago Yunshun Chen ▴ 900
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1
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3.3k
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Answer: A: edgeR: DE summary of decideTestsDGE
13.5 years ago Yunshun Chen ▴ 900
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