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Answer: Answer: Error in DGEList(counts = cnt, group = group) : non-numeric values found in c
6 weeks ago Yunshun Chen ▴ 790
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2
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520
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Answer: Answer: statistics : edger or DESeq2 to asses the differential binding using the averag
7 months ago Yunshun Chen ▴ 790
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0
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687
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Answer: Answer: filterbyexp() in edgeR
15 months ago Yunshun Chen ▴ 790
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2.6k
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Answer: Answer: differential expression for Single-cell RNAseq data using edgeR
22 months ago Yunshun Chen ▴ 790
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1
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570
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Answer: Answer: Confusion using edgeR and spline-fitted data
23 months ago Yunshun Chen ▴ 790
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428
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Answer: Answer: edgeR & blocking with complex experimental design
2.0 years ago Yunshun Chen ▴ 790
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1.1k
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Answer: Answer: How can I get a list of the DE genes from edgeR?
2.3 years ago Yunshun Chen ▴ 790
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1
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532
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Answer: Answer: Help creating a paired sample design matrix in edgeR
2.3 years ago Yunshun Chen ▴ 790
2
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1
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1.8k
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Answer: Answer: Calculation of logFC in edgeR
2.3 years ago Yunshun Chen ▴ 790
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1
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588
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Answer: Answer: Question regarding lib.sizes when using glmQLFit
2.4 years ago Yunshun Chen ▴ 790
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0
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448
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Answer: Comment: Additive Model for Variable Adjustment in edgeR
2.5 years ago Yunshun Chen ▴ 790
3
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1
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1.3k
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Answer: Answer: edgeR supports continuous covariates?
2.6 years ago Yunshun Chen ▴ 790
2
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1
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1.4k
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Answer: A: EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
2.6 years ago Yunshun Chen ▴ 790
1
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0
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1.2k
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Answer: A: "Error in xy.coords(x, y, setLab = FALSE) : 'x' and 'y' lengths differ" using gl
2.8 years ago Yunshun Chen ▴ 790
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299
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Answer: A: edgeR DGEList model matrix and experiment design
3.2 years ago Yunshun Chen ▴ 790
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929
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Answer: A: RNAseq analysis with edgeR-interaction terms and comparison within and between g
3.2 years ago Yunshun Chen ▴ 790
2
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1
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2.0k
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Answer: A: Including multiple covariates in edgeR
3.3 years ago Yunshun Chen ▴ 790
1
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1
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610
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Answer: A: EdgeR - How to define a group when calculating BCV
3.3 years ago Yunshun Chen ▴ 790
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1
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867
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Answer: A: adding "symbol" column in my differential expressed genes in EdgeR
3.5 years ago Yunshun Chen ▴ 790
2
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0
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1.2k
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Answer: A: interpreting FC values from glmTreat, especially unshrunk log-fold-changes
3.5 years ago Yunshun Chen ▴ 790
1
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1
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424
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Answer: A: Nested Interaction in edgeR and composition bias
3.6 years ago Yunshun Chen ▴ 790
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415
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Answer: A: EdgeR DGElist - equal counts between treatment and control incorrectly give sign
3.6 years ago Yunshun Chen ▴ 790
3
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1
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366
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Answer: A: Can't get function plotExonJunc to work?
3.6 years ago Yunshun Chen ▴ 790
5
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2
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1.1k
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Answer: A: EdgeR - Complex design - contrasts/coefficients
3.7 years ago Yunshun Chen ▴ 790
2
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1
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785
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Answer: A: is our edgeR code doing what we think it does?
3.7 years ago Yunshun Chen ▴ 790
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0
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2.0k
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Answer: A: edgeR DGEList and design matrix
3.8 years ago Yunshun Chen ▴ 790
2
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1
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2.6k
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Answer: A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
6.8 years ago Yunshun Chen ▴ 790
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1
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1.4k
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Answer: A: problems when installing edgeR
6.8 years ago Yunshun Chen ▴ 790
1
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0
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787
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Answer: A: Treat p > 1
7.0 years ago Yunshun Chen ▴ 790
2
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2
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3.7k
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Answer: A: Setting up the Design Matrix
7.4 years ago Yunshun Chen ▴ 790
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1
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2.2k
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Answer: A: edgeR for with no Replicate
7.4 years ago Yunshun Chen ▴ 790
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1
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1.4k
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Answer: A: ANOVA in EdgeR
7.5 years ago Yunshun Chen ▴ 790
2
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0
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2.8k
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Answer: A: Different results in edgeR using simple vs GLM
7.6 years ago Yunshun Chen ▴ 790
2
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1
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1.1k
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Answer: A: negative values for trended dispersion with edgeR
7.7 years ago Yunshun Chen ▴ 790
2
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1
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1.7k
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Answer: A: edgeR analysis of effect of treatments within time points
7.7 years ago Yunshun Chen ▴ 790
4
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15k
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Answer: C: Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
8.6 years ago Yunshun Chen ▴ 790
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0
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1.6k
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Answer: A: tagwise parameters for negative binomial distribution in edgeR
9.2 years ago Yunshun Chen ▴ 790
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0
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3.3k
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Answer: A: edgeR design matrix, one group vs average of other groups
9.2 years ago Yunshun Chen ▴ 790
1
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1
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3.3k
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Answer: A: edgeR design matrix, one group vs average of other groups
9.2 years ago Yunshun Chen ▴ 790
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1
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2.3k
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Answer: A: EdgeR classic vs. glm
9.2 years ago Yunshun Chen ▴ 790
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0
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2.2k
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Answer: A: edgeR: plotBCV, gof() and plotMDS, for outlier detection
9.2 years ago Yunshun Chen ▴ 790
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0
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1.1k
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Answer: A: limma for time course dataset 2
9.3 years ago Yunshun Chen ▴ 790
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0
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1.1k
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Answer: A: limma for time course dataset 2
9.3 years ago Yunshun Chen ▴ 790
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0
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1.1k
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Answer: A: limma for time course dataset 2
9.3 years ago Yunshun Chen ▴ 790
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1
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2.5k
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Answer: A: edgeR: DE summary of decideTestsDGE
10.8 years ago Yunshun Chen ▴ 790
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