Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
1
vote
1
reply
464
views
Answer: Answer: edgeR: Time course RNA-seq experiments
6 months ago Yunshun Chen ▴ 840
1
vote
1
reply
2.3k
views
Answer: Answer: Error in DGEList(counts = cnt, group = group) : non-numeric values found in c
13 months ago Yunshun Chen ▴ 840
0
votes
2
replies
1.0k
views
Answer: Answer: statistics : edger or DESeq2 to asses the differential binding using the averag
18 months ago Yunshun Chen ▴ 840
2
votes
0
replies
1.3k
views
Answer: Answer: filterbyexp() in edgeR
2.3 years ago Yunshun Chen ▴ 840
1
vote
1
reply
3.9k
views
Answer: Answer: differential expression for Single-cell RNAseq data using edgeR
2.8 years ago Yunshun Chen ▴ 840
1
vote
1
reply
843
views
Answer: Answer: Confusion using edgeR and spline-fitted data
2.9 years ago Yunshun Chen ▴ 840
1
vote
0
replies
701
views
Answer: Answer: edgeR & blocking with complex experimental design
3.0 years ago Yunshun Chen ▴ 840
1
vote
0
replies
1.7k
views
Answer: Answer: How can I get a list of the DE genes from edgeR?
3.2 years ago Yunshun Chen ▴ 840
0
votes
1
reply
900
views
Answer: Answer: Help creating a paired sample design matrix in edgeR
3.2 years ago Yunshun Chen ▴ 840
2
votes
1
reply
2.8k
views
Answer: Answer: Calculation of logFC in edgeR
3.3 years ago Yunshun Chen ▴ 840
1
vote
1
reply
842
views
Answer: Answer: Question regarding lib.sizes when using glmQLFit
3.3 years ago Yunshun Chen ▴ 840
1
vote
0
replies
641
views
Answer: Comment: Additive Model for Variable Adjustment in edgeR
3.4 years ago Yunshun Chen ▴ 840
3
votes
1
reply
2.0k
views
Answer: Answer: edgeR supports continuous covariates?
3.5 years ago Yunshun Chen ▴ 840
2
votes
1
reply
2.2k
views
Answer: A: EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
3.6 years ago Yunshun Chen ▴ 840
1
vote
0
replies
1.8k
views
Answer: A: "Error in xy.coords(x, y, setLab = FALSE) : 'x' and 'y' lengths differ" using gl
3.8 years ago Yunshun Chen ▴ 840
1
vote
0
replies
521
views
Answer: A: edgeR DGEList model matrix and experiment design
4.1 years ago Yunshun Chen ▴ 840
1
vote
0
replies
1.2k
views
Answer: A: RNAseq analysis with edgeR-interaction terms and comparison within and between g
4.1 years ago Yunshun Chen ▴ 840
2
votes
1
reply
3.2k
views
Answer: A: Including multiple covariates in edgeR
4.2 years ago Yunshun Chen ▴ 840
1
vote
1
reply
1.1k
views
Answer: A: EdgeR - How to define a group when calculating BCV
4.2 years ago Yunshun Chen ▴ 840
0
votes
1
reply
1.7k
views
Answer: A: adding "symbol" column in my differential expressed genes in EdgeR
4.5 years ago Yunshun Chen ▴ 840
2
votes
0
replies
1.8k
views
Answer: A: interpreting FC values from glmTreat, especially unshrunk log-fold-changes
4.5 years ago Yunshun Chen ▴ 840
1
vote
1
reply
676
views
Answer: A: Nested Interaction in edgeR and composition bias
4.5 years ago Yunshun Chen ▴ 840
1
vote
0
replies
726
views
Answer: A: EdgeR DGElist - equal counts between treatment and control incorrectly give sign
4.5 years ago Yunshun Chen ▴ 840
3
votes
1
reply
548
views
Answer: A: Can't get function plotExonJunc to work?
4.6 years ago Yunshun Chen ▴ 840
5
votes
2
replies
1.7k
views
Answer: A: EdgeR - Complex design - contrasts/coefficients
4.6 years ago Yunshun Chen ▴ 840
2
votes
1
reply
1.3k
views
Answer: A: is our edgeR code doing what we think it does?
4.7 years ago Yunshun Chen ▴ 840
0
votes
0
replies
2.7k
views
Answer: A: edgeR DGEList and design matrix
4.8 years ago Yunshun Chen ▴ 840
2
votes
1
reply
3.3k
views
Answer: A: Reference paper or resource for limma::diffSplice and edgeR::diffSpliceDGE metho
7.8 years ago Yunshun Chen ▴ 840
0
votes
1
reply
1.7k
views
Answer: A: problems when installing edgeR
7.8 years ago Yunshun Chen ▴ 840
1
vote
0
replies
1.0k
views
Answer: A: Treat p > 1
7.9 years ago Yunshun Chen ▴ 840
2
votes
2
replies
4.3k
views
Answer: A: Setting up the Design Matrix
8.3 years ago Yunshun Chen ▴ 840
1
vote
1
reply
2.8k
views
Answer: A: edgeR for with no Replicate
8.4 years ago Yunshun Chen ▴ 840
0
votes
1
reply
1.8k
views
Answer: A: ANOVA in EdgeR
8.5 years ago Yunshun Chen ▴ 840
2
votes
0
replies
3.3k
views
Answer: A: Different results in edgeR using simple vs GLM
8.6 years ago Yunshun Chen ▴ 840
2
votes
1
reply
1.4k
views
Answer: A: negative values for trended dispersion with edgeR
8.6 years ago Yunshun Chen ▴ 840
2
votes
1
reply
1.9k
views
Answer: A: edgeR analysis of effect of treatments within time points
8.6 years ago Yunshun Chen ▴ 840
4
votes
0
replies
16k
views
Answer: C: Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
9.5 years ago Yunshun Chen ▴ 840
0
votes
0
replies
2.0k
views
Answer: A: tagwise parameters for negative binomial distribution in edgeR
10.1 years ago Yunshun Chen ▴ 840
0
votes
0
replies
3.8k
views
Answer: A: edgeR design matrix, one group vs average of other groups
10.2 years ago Yunshun Chen ▴ 840
1
vote
1
reply
3.8k
views
Answer: A: edgeR design matrix, one group vs average of other groups
10.2 years ago Yunshun Chen ▴ 840
0
votes
1
reply
2.5k
views
Answer: A: EdgeR classic vs. glm
10.2 years ago Yunshun Chen ▴ 840
0
votes
0
replies
2.5k
views
Answer: A: edgeR: plotBCV, gof() and plotMDS, for outlier detection
10.2 years ago Yunshun Chen ▴ 840
0
votes
0
replies
1.4k
views
Answer: A: limma for time course dataset 2
10.2 years ago Yunshun Chen ▴ 840
0
votes
0
replies
1.4k
views
Answer: A: limma for time course dataset 2
10.2 years ago Yunshun Chen ▴ 840
0
votes
0
replies
1.4k
views
Answer: A: limma for time course dataset 2
10.2 years ago Yunshun Chen ▴ 840
0
votes
1
reply
2.8k
views
Answer: A: edgeR: DE summary of decideTestsDGE
11.7 years ago Yunshun Chen ▴ 840
46 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6