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Answer: Answer: [Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Bla
12 days ago Rory Stark ★ 5.1k
0
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0
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1.9k
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Comment: Comment: Subtracting INPUT reads from ChIP read counts.
12 weeks ago Rory Stark ★ 5.1k
0
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0
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2.9k
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Comment: Comment: Technical details of DiffBind correlation analysis
12 weeks ago Rory Stark ★ 5.1k
0
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0
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1.8k
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Comment: Comment: DiffBind error: diffbind DESeq2 analysis has not been run for this contrast
4 months ago Rory Stark ★ 5.1k
0
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1
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1.2k
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Answer: Answer: DiffBind returns different grey lists every time I run dba.blacklist even if I s
6 months ago Rory Stark ★ 5.1k
2
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1
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452
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Answer: Answer: DiffBind dba.analyze function doesn't have bSubControl option anymore?
6 months ago Rory Stark ★ 5.1k
0
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0
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1.1k
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Comment: Comment: DiffBind handling of replicates and consensus
6 months ago Rory Stark ★ 5.1k
1
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1
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1.2k
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Comment: Comment: DiffBind: dba.plotProfile(profiles)
6 months ago Rory Stark ★ 5.1k
1
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1
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595
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Answer: Answer: DiffBind plot.profile y-axis unit and individual locus value on the heatmap
8 months ago Rory Stark ★ 5.1k
0
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0
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451
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Comment: Comment: DiffBind error
8 months ago Rory Stark ★ 5.1k
1
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0
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1.9k
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Answer: Answer: Help with error DiffBind
9 months ago Rory Stark ★ 5.1k
0
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0
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1.1k
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Comment: Comment: DiffBind does not use DESeq2 MLE estimation of fold change
9 months ago Rory Stark ★ 5.1k
0
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0
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2.2k
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Answer: Answer: Question regarding lfcShrink types in DiffBind
9 months ago Rory Stark ★ 5.1k
0
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0
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794
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Answer: Answer: DiffBind dropping peaks in ATAC-seq data
9 months ago Rory Stark ★ 5.1k
0
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0
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2.9k
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Answer: Answer: diffbind
9 months ago Rory Stark ★ 5.1k
0
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0
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605
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Comment: Comment: DiffBind issue with edgeR$bTagwise and DESeq2$fitType
9 months ago Rory Stark ★ 5.1k
0
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1
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605
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Answer: Answer: DiffBind issue with edgeR$bTagwise and DESeq2$fitType
9 months ago Rory Stark ★ 5.1k
0
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1
reply
1.1k
views
Answer: Answer: DiffBind handling of replicates and consensus
9 months ago Rory Stark ★ 5.1k
0
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2
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2.9k
views
Answer: Answer: diffbind
9 months ago Rory Stark ★ 5.1k
1
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1
reply
663
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Answer: Answer: DiffBind Using edgeR: TMM Normalisation produces identical results to Library Si
9 months ago Rory Stark ★ 5.1k
0
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0
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534
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Answer: Answer: DiffBind output issues
10 months ago Rory Stark ★ 5.1k
1
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1
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749
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Answer: Answer: Interpret plots from DiffBind
10 months ago Rory Stark ★ 5.1k
2
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1
reply
790
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Comment: Comment: DESeq2 lfcShrink function used in DiffBind package
10 months ago Rory Stark ★ 5.1k
2
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0
replies
598
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Answer: Answer: Sample sheet file for DiffBind
10 months ago Rory Stark ★ 5.1k
1
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0
replies
1.8k
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Comment: Comment: Interpret plot from DiffBind
10 months ago Rory Stark ★ 5.1k
1
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1
reply
1.8k
views
Comment: Comment: Interpret plot from DiffBind
10 months ago Rory Stark ★ 5.1k
1
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1
reply
1.8k
views
Comment: Comment: Interpret plot from DiffBind
10 months ago Rory Stark ★ 5.1k
1
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1
reply
1.8k
views
Comment: Comment: Interpret plot from DiffBind
10 months ago Rory Stark ★ 5.1k
0
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1
reply
1.2k
views
Answer: Answer: Diffbind "No genome detected"
10 months ago Rory Stark ★ 5.1k
1
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3
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1.8k
views
Comment: Comment: Interpret plot from DiffBind
10 months ago Rory Stark ★ 5.1k
2
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1
reply
1.8k
views
Answer: Answer: Interpret plot from DiffBind
10 months ago Rory Stark ★ 5.1k
0
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0
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995
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Comment: Comment: DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-cha
10 months ago Rory Stark ★ 5.1k
0
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0
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551
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Answer: Answer: dba.count with pre-defined regions produced only 10% results
11 months ago Rory Stark ★ 5.1k
0
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0
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646
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Answer: Answer: DiffBind dba() in parallel
11 months ago Rory Stark ★ 5.1k
1
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1
reply
995
views
Answer: Answer: DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-cha
11 months ago Rory Stark ★ 5.1k
1
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0
replies
772
views
Answer: Answer: Getting different differentially accessible peaks between versions
11 months ago Rory Stark ★ 5.1k
0
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1
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1.4k
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Comment: Comment: DiffBind - question about showing significant difference on peaks with 0 fold ch
11 months ago Rory Stark ★ 5.1k
2
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1
reply
1.8k
views
Answer: Answer: Errors with DiffBind, Error in peaks[, pCol]/max(peaks[, pCol]) : non-numeric
11 months ago Rory Stark ★ 5.1k
0
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1
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1.4k
views
Comment: Comment: DiffBind - question about showing significant difference on peaks with 0 fold ch
12 months ago Rory Stark ★ 5.1k
0
votes
1
reply
1.4k
views
Answer: Answer: DiffBind - question about showing significant difference on peaks with 0 fold ch
12 months ago Rory Stark ★ 5.1k
0
votes
1
reply
1.1k
views
Comment: Comment: DiffBind - question on the use of filtered or unfiltered input data
12 months ago Rory Stark ★ 5.1k
1
vote
1
reply
897
views
Comment: Comment: Positive and negative value fold value in ATAC seq using DiffBind
12 months ago Rory Stark ★ 5.1k
2
votes
0
replies
590
views
Answer: Answer: how diffbind count the reads of each peak in each sample?
12 months ago Rory Stark ★ 5.1k
0
votes
1
reply
1.1k
views
Answer: Answer: DiffBind - question on the use of filtered or unfiltered input data
12 months ago Rory Stark ★ 5.1k
1
vote
1
reply
897
views
Comment: Comment: Positive and negative value fold value in ATAC seq using DiffBind
12 months ago Rory Stark ★ 5.1k
2
votes
1
reply
897
views
Answer: Answer: Positive and negative value fold value in ATAC seq using DiffBind
12 months ago Rory Stark ★ 5.1k
0
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0
replies
507
views
Answer: Answer: Plotting read densities from DiffBind results
12 months ago Rory Stark ★ 5.1k
0
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1
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713
views
Answer: Answer: Question regarding multiple comparisons in DiffBind
12 months ago Rory Stark ★ 5.1k
1
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0
replies
840
views
Comment: Comment: How to annotate genes from results of DiffBind
12 months ago Rory Stark ★ 5.1k
1
vote
1
reply
2.7k
views
Comment: Comment: Help with Error in DiffBind
12 months ago Rory Stark ★ 5.1k
926 results • Page 1 of 19
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