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Answer: Answer: Diffbind interpretation of data - fold change
13 months ago Rory Stark ★ 5.3k
0
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1
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1.1k
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Answer: Answer: DiffBind dba.report discrepancy
16 months ago Rory Stark ★ 5.3k
0
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0
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1.5k
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Comment: Comment: DiffBind full library size not reliable
18 months ago Rory Stark ★ 5.3k
0
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0
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1.1k
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Comment: Comment: Create merged ChIP heatmap across conditions
19 months ago Rory Stark ★ 5.3k
1
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1
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1.1k
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Answer: Answer: Create merged ChIP heatmap across conditions
19 months ago Rory Stark ★ 5.3k
0
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2
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2.1k
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Answer: Answer: More regions in union when increasing DBA$config$mergeOverlap
22 months ago Rory Stark ★ 5.3k
2
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1
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2.0k
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Answer: Answer: [Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Bla
22 months ago Rory Stark ★ 5.3k
0
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0
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3.9k
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Comment: Comment: Technical details of DiffBind correlation analysis
2.1 years ago Rory Stark ★ 5.3k
0
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0
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2.7k
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Comment: Comment: DiffBind error: diffbind DESeq2 analysis has not been run for this contrast
2.2 years ago Rory Stark ★ 5.3k
0
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1
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2.0k
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Answer: Answer: DiffBind returns different grey lists every time I run dba.blacklist even if I s
2.4 years ago Rory Stark ★ 5.3k
2
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1
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970
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Answer: Answer: DiffBind dba.analyze function doesn't have bSubControl option anymore?
2.4 years ago Rory Stark ★ 5.3k
0
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0
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2.5k
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Comment: Comment: DiffBind handling of replicates and consensus
2.4 years ago Rory Stark ★ 5.3k
1
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1
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2.5k
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Comment: Comment: DiffBind: dba.plotProfile(profiles)
2.4 years ago Rory Stark ★ 5.3k
1
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1
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1.4k
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Answer: Answer: DiffBind plot.profile y-axis unit and individual locus value on the heatmap
2.5 years ago Rory Stark ★ 5.3k
0
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0
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961
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Comment: Comment: DiffBind error
2.5 years ago Rory Stark ★ 5.3k
1
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0
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4.0k
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Answer: Answer: Help with error DiffBind
2.6 years ago Rory Stark ★ 5.3k
0
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0
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1.8k
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Comment: Comment: DiffBind does not use DESeq2 MLE estimation of fold change
2.6 years ago Rory Stark ★ 5.3k
0
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0
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5.2k
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Answer: Answer: Question regarding lfcShrink types in DiffBind
2.6 years ago Rory Stark ★ 5.3k
0
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0
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2.3k
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Answer: Answer: DiffBind dropping peaks in ATAC-seq data
2.6 years ago Rory Stark ★ 5.3k
0
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0
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7.5k
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Answer: Answer: diffbind
2.6 years ago Rory Stark ★ 5.3k
0
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0
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1.4k
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Comment: Comment: DiffBind issue with edgeR$bTagwise and DESeq2$fitType
2.6 years ago Rory Stark ★ 5.3k
0
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1
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1.4k
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Answer: Answer: DiffBind issue with edgeR$bTagwise and DESeq2$fitType
2.6 years ago Rory Stark ★ 5.3k
0
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1
reply
2.5k
views
Answer: Answer: DiffBind handling of replicates and consensus
2.6 years ago Rory Stark ★ 5.3k
0
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2
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7.5k
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Answer: Answer: diffbind
2.6 years ago Rory Stark ★ 5.3k
1
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1
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1.2k
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Answer: Answer: DiffBind Using edgeR: TMM Normalisation produces identical results to Library Si
2.6 years ago Rory Stark ★ 5.3k
0
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0
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1.1k
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Answer: Answer: DiffBind output issues
2.7 years ago Rory Stark ★ 5.3k
1
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1
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1.5k
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Answer: Answer: Interpret plots from DiffBind
2.7 years ago Rory Stark ★ 5.3k
2
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1
reply
1.9k
views
Comment: Comment: DESeq2 lfcShrink function used in DiffBind package
2.7 years ago Rory Stark ★ 5.3k
2
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0
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1.5k
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Answer: Answer: Sample sheet file for DiffBind
2.7 years ago Rory Stark ★ 5.3k
1
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0
replies
3.7k
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Comment: Comment: Interpret plot from DiffBind
2.7 years ago Rory Stark ★ 5.3k
1
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1
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3.7k
views
Comment: Comment: Interpret plot from DiffBind
2.7 years ago Rory Stark ★ 5.3k
1
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1
reply
3.7k
views
Comment: Comment: Interpret plot from DiffBind
2.7 years ago Rory Stark ★ 5.3k
1
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1
reply
3.7k
views
Comment: Comment: Interpret plot from DiffBind
2.7 years ago Rory Stark ★ 5.3k
0
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1
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2.5k
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Answer: Answer: Diffbind "No genome detected"
2.7 years ago Rory Stark ★ 5.3k
1
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3
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3.7k
views
Comment: Comment: Interpret plot from DiffBind
2.7 years ago Rory Stark ★ 5.3k
3
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1
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3.7k
views
Answer: Answer: Interpret plot from DiffBind
2.7 years ago Rory Stark ★ 5.3k
0
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0
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2.5k
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Comment: Comment: DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-cha
2.7 years ago Rory Stark ★ 5.3k
0
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0
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944
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Answer: Answer: dba.count with pre-defined regions produced only 10% results
2.8 years ago Rory Stark ★ 5.3k
0
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0
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1.3k
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Answer: Answer: DiffBind dba() in parallel
2.8 years ago Rory Stark ★ 5.3k
1
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1
reply
2.5k
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Answer: Answer: DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-cha
2.8 years ago Rory Stark ★ 5.3k
1
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0
replies
1.3k
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Answer: Answer: Getting different differentially accessible peaks between versions
2.8 years ago Rory Stark ★ 5.3k
0
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1
reply
2.4k
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Comment: Comment: DiffBind - question about showing significant difference on peaks with 0 fold ch
2.8 years ago Rory Stark ★ 5.3k
2
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2
replies
4.4k
views
Answer: Answer: Errors with DiffBind, Error in peaks[, pCol]/max(peaks[, pCol]) : non-numeric
2.8 years ago Rory Stark ★ 5.3k
0
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1
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2.4k
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Comment: Comment: DiffBind - question about showing significant difference on peaks with 0 fold ch
2.8 years ago Rory Stark ★ 5.3k
0
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1
reply
2.4k
views
Answer: Answer: DiffBind - question about showing significant difference on peaks with 0 fold ch
2.8 years ago Rory Stark ★ 5.3k
0
votes
1
reply
7.9k
views
Comment: Comment: DiffBind - question on the use of filtered or unfiltered input data
2.8 years ago Rory Stark ★ 5.3k
1
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1
reply
1.8k
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Comment: Comment: Positive and negative value fold value in ATAC seq using DiffBind
2.8 years ago Rory Stark ★ 5.3k
2
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0
replies
1.2k
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Answer: Answer: how diffbind count the reads of each peak in each sample?
2.8 years ago Rory Stark ★ 5.3k
0
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1
reply
7.9k
views
Answer: Answer: DiffBind - question on the use of filtered or unfiltered input data
2.8 years ago Rory Stark ★ 5.3k
1
vote
1
reply
1.8k
views
Comment: Comment: Positive and negative value fold value in ATAC seq using DiffBind
2.8 years ago Rory Stark ★ 5.3k
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