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433
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Answer: Answer: DiffBind dba.report discrepancy
5 weeks ago Rory Stark ★ 5.2k
0
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0
replies
710
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Comment: Comment: DiffBind full library size not reliable
3 months ago Rory Stark ★ 5.2k
0
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0
replies
458
views
Comment: Comment: Create merged ChIP heatmap across conditions
4 months ago Rory Stark ★ 5.2k
1
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1
reply
458
views
Answer: Answer: Create merged ChIP heatmap across conditions
4 months ago Rory Stark ★ 5.2k
0
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2
replies
1.2k
views
Answer: Answer: More regions in union when increasing DBA$config$mergeOverlap
7 months ago Rory Stark ★ 5.2k
2
votes
1
reply
911
views
Answer: Answer: [Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Bla
7 months ago Rory Stark ★ 5.2k
0
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0
replies
2.3k
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Comment: Comment: Subtracting INPUT reads from ChIP read counts.
10 months ago Rory Stark ★ 5.2k
0
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0
replies
3.3k
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Comment: Comment: Technical details of DiffBind correlation analysis
10 months ago Rory Stark ★ 5.2k
0
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0
replies
2.2k
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Comment: Comment: DiffBind error: diffbind DESeq2 analysis has not been run for this contrast
11 months ago Rory Stark ★ 5.2k
0
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1
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1.5k
views
Answer: Answer: DiffBind returns different grey lists every time I run dba.blacklist even if I s
14 months ago Rory Stark ★ 5.2k
2
votes
1
reply
660
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Answer: Answer: DiffBind dba.analyze function doesn't have bSubControl option anymore?
14 months ago Rory Stark ★ 5.2k
0
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0
replies
1.7k
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Comment: Comment: DiffBind handling of replicates and consensus
14 months ago Rory Stark ★ 5.2k
1
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1
reply
1.8k
views
Comment: Comment: DiffBind: dba.plotProfile(profiles)
14 months ago Rory Stark ★ 5.2k
1
vote
1
reply
970
views
Answer: Answer: DiffBind plot.profile y-axis unit and individual locus value on the heatmap
15 months ago Rory Stark ★ 5.2k
0
votes
0
replies
696
views
Comment: Comment: DiffBind error
15 months ago Rory Stark ★ 5.2k
1
vote
0
replies
3.3k
views
Answer: Answer: Help with error DiffBind
16 months ago Rory Stark ★ 5.2k
0
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0
replies
1.4k
views
Comment: Comment: DiffBind does not use DESeq2 MLE estimation of fold change
16 months ago Rory Stark ★ 5.2k
0
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0
replies
4.3k
views
Answer: Answer: Question regarding lfcShrink types in DiffBind
16 months ago Rory Stark ★ 5.2k
0
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0
replies
1.4k
views
Answer: Answer: DiffBind dropping peaks in ATAC-seq data
16 months ago Rory Stark ★ 5.2k
0
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0
replies
6.4k
views
Answer: Answer: diffbind
16 months ago Rory Stark ★ 5.2k
0
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0
replies
919
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Comment: Comment: DiffBind issue with edgeR$bTagwise and DESeq2$fitType
16 months ago Rory Stark ★ 5.2k
0
votes
1
reply
919
views
Answer: Answer: DiffBind issue with edgeR$bTagwise and DESeq2$fitType
16 months ago Rory Stark ★ 5.2k
0
votes
1
reply
1.7k
views
Answer: Answer: DiffBind handling of replicates and consensus
16 months ago Rory Stark ★ 5.2k
0
votes
2
replies
6.4k
views
Answer: Answer: diffbind
16 months ago Rory Stark ★ 5.2k
1
vote
1
reply
917
views
Answer: Answer: DiffBind Using edgeR: TMM Normalisation produces identical results to Library Si
17 months ago Rory Stark ★ 5.2k
0
votes
0
replies
757
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Answer: Answer: DiffBind output issues
17 months ago Rory Stark ★ 5.2k
1
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1
reply
1.2k
views
Answer: Answer: Interpret plots from DiffBind
17 months ago Rory Stark ★ 5.2k
2
votes
1
reply
1.2k
views
Comment: Comment: DESeq2 lfcShrink function used in DiffBind package
17 months ago Rory Stark ★ 5.2k
2
votes
0
replies
863
views
Answer: Answer: Sample sheet file for DiffBind
17 months ago Rory Stark ★ 5.2k
1
vote
0
replies
2.6k
views
Comment: Comment: Interpret plot from DiffBind
17 months ago Rory Stark ★ 5.2k
1
vote
1
reply
2.6k
views
Comment: Comment: Interpret plot from DiffBind
18 months ago Rory Stark ★ 5.2k
1
vote
1
reply
2.6k
views
Comment: Comment: Interpret plot from DiffBind
18 months ago Rory Stark ★ 5.2k
1
vote
1
reply
2.6k
views
Comment: Comment: Interpret plot from DiffBind
18 months ago Rory Stark ★ 5.2k
0
votes
1
reply
1.8k
views
Answer: Answer: Diffbind "No genome detected"
18 months ago Rory Stark ★ 5.2k
1
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3
replies
2.6k
views
Comment: Comment: Interpret plot from DiffBind
18 months ago Rory Stark ★ 5.2k
3
votes
1
reply
2.6k
views
Answer: Answer: Interpret plot from DiffBind
18 months ago Rory Stark ★ 5.2k
0
votes
0
replies
1.6k
views
Comment: Comment: DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-cha
18 months ago Rory Stark ★ 5.2k
0
votes
0
replies
725
views
Answer: Answer: dba.count with pre-defined regions produced only 10% results
18 months ago Rory Stark ★ 5.2k
0
votes
0
replies
952
views
Answer: Answer: DiffBind dba() in parallel
18 months ago Rory Stark ★ 5.2k
1
vote
1
reply
1.6k
views
Answer: Answer: DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-cha
18 months ago Rory Stark ★ 5.2k
1
vote
0
replies
1.0k
views
Answer: Answer: Getting different differentially accessible peaks between versions
18 months ago Rory Stark ★ 5.2k
0
votes
1
reply
1.8k
views
Comment: Comment: DiffBind - question about showing significant difference on peaks with 0 fold ch
19 months ago Rory Stark ★ 5.2k
2
votes
1
reply
2.8k
views
Answer: Answer: Errors with DiffBind, Error in peaks[, pCol]/max(peaks[, pCol]) : non-numeric
19 months ago Rory Stark ★ 5.2k
0
votes
1
reply
1.8k
views
Comment: Comment: DiffBind - question about showing significant difference on peaks with 0 fold ch
19 months ago Rory Stark ★ 5.2k
0
votes
1
reply
1.8k
views
Answer: Answer: DiffBind - question about showing significant difference on peaks with 0 fold ch
19 months ago Rory Stark ★ 5.2k
0
votes
1
reply
1.6k
views
Comment: Comment: DiffBind - question on the use of filtered or unfiltered input data
19 months ago Rory Stark ★ 5.2k
1
vote
1
reply
1.3k
views
Comment: Comment: Positive and negative value fold value in ATAC seq using DiffBind
19 months ago Rory Stark ★ 5.2k
2
votes
0
replies
846
views
Answer: Answer: how diffbind count the reads of each peak in each sample?
19 months ago Rory Stark ★ 5.2k
0
votes
1
reply
1.6k
views
Answer: Answer: DiffBind - question on the use of filtered or unfiltered input data
19 months ago Rory Stark ★ 5.2k
1
vote
1
reply
1.3k
views
Comment: Comment: Positive and negative value fold value in ATAC seq using DiffBind
19 months ago Rory Stark ★ 5.2k
931 results • Page 1 of 19
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