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Answer: Answer: Diffbind dba$binding slot finding Chr21 for an MM10 dataset
2.6 years ago Rory Stark ★ 5.2k
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1
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1.3k
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Answer: Answer: DiffBind on static peak set for all samples
2.6 years ago Rory Stark ★ 5.2k
2
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1
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1.2k
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Answer: Answer: DiffBind always reverts to default normalization
2.6 years ago Rory Stark ★ 5.2k
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0
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5.5k
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Comment: Comment: How to select summit size for histone ChiP-Seq in Diffbind
2.7 years ago • updated 2.6 years ago Rory Stark ★ 5.2k
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0
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1.1k
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Answer: Answer: Input peak set for DiffBind should be all peaks or FDR filtered?
2.7 years ago Rory Stark ★ 5.2k
0
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0
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2.6k
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Answer: Answer: Retrieve loadings/eigenvalues for PCAs using DiffBind's dba.plotPCA
2.7 years ago Rory Stark ★ 5.2k
1
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0
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1.4k
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Answer: Answer: DiffBind drop out some peaks
2.7 years ago Rory Stark ★ 5.2k
1
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0
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1.6k
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Answer: Answer: Normalize ChIP-seq samples with different signal-to-noise ratio
2.7 years ago Rory Stark ★ 5.2k
0
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1
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1.7k
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Comment: Comment: can the counts extracted from Diffbind be used to analysis in Deseq2 as the RNAs
2.7 years ago • updated 2.6 years ago Rory Stark ★ 5.2k
1
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1
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1.8k
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Comment: Comment: How to get 3/4 peak overlap in DiffBind?
2.8 years ago Rory Stark ★ 5.2k
0
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1
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3.3k
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Answer: Answer: Questions about DiffBind loaded peaks and re-count reads
2.8 years ago Rory Stark ★ 5.2k
2
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1
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1.8k
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Comment: Comment: How to get 3/4 peak overlap in DiffBind?
2.8 years ago Rory Stark ★ 5.2k
2
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1
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1.8k
views
Answer: Answer: How to get 3/4 peak overlap in DiffBind?
2.8 years ago Rory Stark ★ 5.2k
0
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0
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4.0k
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Answer: Answer: How to get all possible comparisons in DiffBind
2.8 years ago Rory Stark ★ 5.2k
0
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2
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2.5k
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Answer: Answer: dba.count() error when re-centering peaks
2.8 years ago Rory Stark ★ 5.2k
0
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1
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784
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Answer: Answer: `dbs.all` object in the vignette
2.8 years ago Rory Stark ★ 5.2k
0
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0
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2.9k
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Comment: Comment: dba.count error
2.8 years ago Rory Stark ★ 5.2k
0
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0
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1.8k
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Comment: Comment: DiffBind dba.count Error in if (sum(tokeep) < length(tokeep))
2.8 years ago Rory Stark ★ 5.2k
0
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1
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2.9k
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Comment: Comment: dba.count error
2.8 years ago Rory Stark ★ 5.2k
0
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1
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2.9k
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Answer: Answer: dba.count error
2.8 years ago Rory Stark ★ 5.2k
0
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0
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603
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Answer: Answer: DiffBind issue: zero values for all peaks in one chromosome
2.9 years ago Rory Stark ★ 5.2k
0
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1
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1.8k
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Answer: Answer: DiffBind dba.count Error in if (sum(tokeep) < length(tokeep))
2.9 years ago Rory Stark ★ 5.2k
0
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0
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5.6k
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Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
2.9 years ago Rory Stark ★ 5.2k
0
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0
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1.9k
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Comment: Comment: DiffBind: Values of Called1 and Called2 do not appear to coincide with input pea
2.9 years ago Rory Stark ★ 5.2k
1
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1
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5.6k
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Comment: Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6
2.9 years ago Rory Stark ★ 5.2k
0
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1
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4.0k
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Answer: Answer: How to get all possible comparisons in DiffBind
2.9 years ago Rory Stark ★ 5.2k
2
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2
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1.0k
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Answer: Answer: Not able to replicated Diffbind example dataset.
2.9 years ago Rory Stark ★ 5.2k
1
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1
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1.9k
views
Comment: Comment: DiffBind: Values of Called1 and Called2 do not appear to coincide with input pea
2.9 years ago Rory Stark ★ 5.2k
0
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2
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1.9k
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Comment: Comment: DiffBind: Values of Called1 and Called2 do not appear to coincide with input pea
2.9 years ago Rory Stark ★ 5.2k
0
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1
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1.9k
views
Comment: Comment: DiffBind: Values of Called1 and Called2 do not appear to coincide with input pea
2.9 years ago Rory Stark ★ 5.2k
0
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1
reply
1.9k
views
Answer: Answer: DiffBind: Values of Called1 and Called2 do not appear to coincide with input pea
2.9 years ago Rory Stark ★ 5.2k
1
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0
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1.3k
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Answer: Answer: DiffBind scoreCol value question
2.9 years ago Rory Stark ★ 5.2k
0
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0
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3.2k
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Comment: Comment: dba.contrast in DiffBind
3.0 years ago Rory Stark ★ 5.2k
0
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0
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1.7k
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Comment: Comment: DiffBind (Error in if (DBA$config$parallelPackage))
3.0 years ago Rory Stark ★ 5.2k
0
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0
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2.0k
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Comment: Comment: DiffBind minOverlap parameter
3.0 years ago Rory Stark ★ 5.2k
0
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0
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928
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Answer: Answer: diffbind binding affinity matrix
3.0 years ago Rory Stark ★ 5.2k
0
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0
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2.6k
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Answer: Answer: DiffBind bUseSummarizeOverlaps error - the rownames and colnames of the supplied
3.0 years ago Rory Stark ★ 5.2k
0
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0
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1000
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Comment: Comment: DiifBind_DBA_report
3.0 years ago Rory Stark ★ 5.2k
3
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1
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3.2k
views
Answer: Answer: dba.contrast in DiffBind
3.0 years ago Rory Stark ★ 5.2k
0
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0
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1.7k
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Answer: Answer: how to select specific genes from heatmap of differentially accessible regions o
3.2 years ago Rory Stark ★ 5.2k
0
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0
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936
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Answer: Answer: Can DiffBind do differential analysis for un-paired peaksets?
3.2 years ago Rory Stark ★ 5.2k
0
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1
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1.6k
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Answer: Answer: Diffbind dba.plotProfile attempt to select less than one element in OneIndex
3.2 years ago Rory Stark ★ 5.2k
0
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1
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1000
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Answer: Answer: DiifBind_DBA_report
3.2 years ago Rory Stark ★ 5.2k
2
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0
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1.2k
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Answer: Answer: Diffbind: differences between design vs no design (same comparison)?
3.2 years ago Rory Stark ★ 5.2k
2
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1
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4.4k
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Comment: Comment: New in DiffBind 3.2: dba.plotProfile() - Peak profiles and profile heatmaps
3.2 years ago Rory Stark ★ 5.2k
1
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1
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947
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Answer: Answer: DiffBind fold parameter vs. IfcThreshold in DESeq2
3.3 years ago Rory Stark ★ 5.2k
0
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0
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1.5k
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Comment: Comment: issue with DiffBind dba.count
3.3 years ago Rory Stark ★ 5.2k
0
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0
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891
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Comment: Comment: DiffBind Occupancy analysis
3.3 years ago Rory Stark ★ 5.2k
3
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2
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1.7k
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Answer: Answer: DiffBind (Error in if (DBA$config$parallelPackage))
3.3 years ago Rory Stark ★ 5.2k
0
votes
1
reply
891
views
Answer: Answer: DiffBind Occupancy analysis
3.3 years ago Rory Stark ★ 5.2k
931 results • Page 4 of 19
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