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Answer: Answer: More regions in union when increasing DBA$config$mergeOverlap
1 day ago Rory Stark ★ 5.2k
2
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1
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382
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Answer: Answer: [Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Bla
22 days ago Rory Stark ★ 5.2k
0
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1
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1.2k
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Answer: Answer: DiffBind returns different grey lists every time I run dba.blacklist even if I s
7 months ago Rory Stark ★ 5.2k
2
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1
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466
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Answer: Answer: DiffBind dba.analyze function doesn't have bSubControl option anymore?
7 months ago Rory Stark ★ 5.2k
1
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1
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622
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Answer: Answer: DiffBind plot.profile y-axis unit and individual locus value on the heatmap
8 months ago Rory Stark ★ 5.2k
1
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0
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1.9k
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Answer: Answer: Help with error DiffBind
9 months ago Rory Stark ★ 5.2k
0
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0
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2.2k
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Answer: Answer: Question regarding lfcShrink types in DiffBind
9 months ago Rory Stark ★ 5.2k
0
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0
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835
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Answer: Answer: DiffBind dropping peaks in ATAC-seq data
9 months ago Rory Stark ★ 5.2k
0
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0
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3.0k
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Answer: Answer: diffbind
9 months ago Rory Stark ★ 5.2k
0
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1
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631
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Answer: Answer: DiffBind issue with edgeR$bTagwise and DESeq2$fitType
9 months ago Rory Stark ★ 5.2k
0
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1
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1.1k
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Answer: Answer: DiffBind handling of replicates and consensus
9 months ago Rory Stark ★ 5.2k
0
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2
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3.0k
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Answer: Answer: diffbind
9 months ago Rory Stark ★ 5.2k
1
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1
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681
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Answer: Answer: DiffBind Using edgeR: TMM Normalisation produces identical results to Library Si
10 months ago Rory Stark ★ 5.2k
0
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0
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544
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Answer: Answer: DiffBind output issues
10 months ago Rory Stark ★ 5.2k
1
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1
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775
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Answer: Answer: Interpret plots from DiffBind
10 months ago Rory Stark ★ 5.2k
2
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0
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612
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Answer: Answer: Sample sheet file for DiffBind
10 months ago Rory Stark ★ 5.2k
0
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1
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1.2k
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Answer: Answer: Diffbind "No genome detected"
11 months ago Rory Stark ★ 5.2k
3
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1
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1.9k
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Answer: Answer: Interpret plot from DiffBind
11 months ago Rory Stark ★ 5.2k
0
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0
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564
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Answer: Answer: dba.count with pre-defined regions produced only 10% results
11 months ago Rory Stark ★ 5.2k
0
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0
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660
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Answer: Answer: DiffBind dba() in parallel
11 months ago Rory Stark ★ 5.2k
1
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1
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1.0k
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Answer: Answer: DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-cha
11 months ago Rory Stark ★ 5.2k
1
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0
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797
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Answer: Answer: Getting different differentially accessible peaks between versions
11 months ago Rory Stark ★ 5.2k
2
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1
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1.8k
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Answer: Answer: Errors with DiffBind, Error in peaks[, pCol]/max(peaks[, pCol]) : non-numeric
12 months ago Rory Stark ★ 5.2k
0
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1
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1.4k
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Answer: Answer: DiffBind - question about showing significant difference on peaks with 0 fold ch
12 months ago Rory Stark ★ 5.2k
2
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0
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606
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Answer: Answer: how diffbind count the reads of each peak in each sample?
12 months ago Rory Stark ★ 5.2k
0
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1
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1.2k
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Answer: Answer: DiffBind - question on the use of filtered or unfiltered input data
12 months ago Rory Stark ★ 5.2k
2
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1
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930
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Answer: Answer: Positive and negative value fold value in ATAC seq using DiffBind
12 months ago Rory Stark ★ 5.2k
0
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0
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517
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Answer: Answer: Plotting read densities from DiffBind results
12 months ago Rory Stark ★ 5.2k
0
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1
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724
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Answer: Answer: Question regarding multiple comparisons in DiffBind
12 months ago Rory Stark ★ 5.2k
2
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1
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2.8k
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Answer: Answer: Help with Error in DiffBind
13 months ago Rory Stark ★ 5.2k
0
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0
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848
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Answer: Answer: Multiple issues reading in peak sets with Diffbind
13 months ago Rory Stark ★ 5.2k
0
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1
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1.1k
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Answer: Answer: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2?
13 months ago Rory Stark ★ 5.2k
2
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0
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1.6k
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Answer: Answer: DiffBind on ATAC seq data
13 months ago Rory Stark ★ 5.2k
1
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1
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2.8k
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Answer: Answer: Help with Error in DiffBind
13 months ago Rory Stark ★ 5.2k
1
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1
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581
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Answer: Answer: Using DiffBind Normalization and Contrasting on Fold Change Values
13 months ago Rory Stark ★ 5.2k
1
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1
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586
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Answer: Answer: DiffBind spike-in lib.sizes confusion
13 months ago Rory Stark ★ 5.2k
0
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1
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1.5k
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Answer: Answer: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
13 months ago Rory Stark ★ 5.2k
0
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0
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462
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Answer: Answer: DiffBind---peak region reads or all reads？
13 months ago Rory Stark ★ 5.2k
0
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0
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886
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Answer: Answer: DiffBind differential analysis
14 months ago Rory Stark ★ 5.2k
1
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1
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920
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Answer: Answer: DiffBind---Normalization problem-spike in or no spike in beforehand?
14 months ago Rory Stark ★ 5.2k
0
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0
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658
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Answer: Answer: DiffBind- differentiate between new peaks and gain peaks
14 months ago Rory Stark ★ 5.2k
0
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0
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622
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Answer: Answer: Setting DBA$config$mergeOverlap for Diffbind
14 months ago Rory Stark ★ 5.2k
0
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0
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546
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Answer: Answer: Diffbind (or maybe DESeq2) Fold clarification
15 months ago Rory Stark ★ 5.2k
0
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0
replies
684
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Answer: Answer: Diffbind matrix/batch effect/normalization
15 months ago Rory Stark ★ 5.2k
0
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0
replies
892
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Answer: Answer: Minor issue regarding customization of text size in Volcano and Heatmap Plots
16 months ago Rory Stark ★ 5.2k
0
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0
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1.1k
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Answer: Answer: Issue in generating a new DBA object with custom counts
16 months ago Rory Stark ★ 5.2k
2
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1
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1.6k
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Answer: Answer: RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
16 months ago Rory Stark ★ 5.2k
0
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0
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850
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Answer: Answer: DiffBind: Error in pv$called[, mask] : subscript out of bounds
16 months ago Rory Stark ★ 5.2k
1
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1
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626
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Answer: Answer: DiffBind Loss and Gain location
16 months ago Rory Stark ★ 5.2k
0
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1
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776
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Answer: Answer: New to ChipSeq getting 0 peaks using dba()
17 months ago Rory Stark ★ 5.2k
568 results • Page 1 of 12
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