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2.0k
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Comment:
Comment: Subtracting INPUT reads from ChIP read counts.
3 months ago
Rory Stark
★ 5.2k
0
votes
0
replies
2.9k
views
Comment:
Comment: Technical details of DiffBind correlation analysis
3 months ago
Rory Stark
★ 5.2k
0
votes
0
replies
1.8k
views
Comment:
Comment: DiffBind error: diffbind DESeq2 analysis has not been run for this contrast
4 months ago
Rory Stark
★ 5.2k
0
votes
0
replies
1.1k
views
Comment:
Comment: DiffBind handling of replicates and consensus
7 months ago
Rory Stark
★ 5.2k
1
vote
1
reply
1.3k
views
Comment:
Comment: DiffBind: dba.plotProfile(profiles)
7 months ago
Rory Stark
★ 5.2k
0
votes
0
replies
483
views
Comment:
Comment: DiffBind error
8 months ago
Rory Stark
★ 5.2k
0
votes
0
replies
1.1k
views
Comment:
Comment: DiffBind does not use DESeq2 MLE estimation of fold change
9 months ago
Rory Stark
★ 5.2k
0
votes
0
replies
631
views
Comment:
Comment: DiffBind issue with edgeR$bTagwise and DESeq2$fitType
9 months ago
Rory Stark
★ 5.2k
2
votes
1
reply
814
views
Comment:
Comment: DESeq2 lfcShrink function used in DiffBind package
10 months ago
Rory Stark
★ 5.2k
1
vote
0
replies
1.9k
views
Comment:
Comment: Interpret plot from DiffBind
10 months ago
Rory Stark
★ 5.2k
1
vote
1
reply
1.9k
views
Comment:
Comment: Interpret plot from DiffBind
11 months ago
Rory Stark
★ 5.2k
1
vote
1
reply
1.9k
views
Comment:
Comment: Interpret plot from DiffBind
11 months ago
Rory Stark
★ 5.2k
1
vote
1
reply
1.9k
views
Comment:
Comment: Interpret plot from DiffBind
11 months ago
Rory Stark
★ 5.2k
1
vote
3
replies
1.9k
views
Comment:
Comment: Interpret plot from DiffBind
11 months ago
Rory Stark
★ 5.2k
0
votes
0
replies
1.0k
views
Comment:
Comment: DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-cha
11 months ago
Rory Stark
★ 5.2k
0
votes
1
reply
1.4k
views
Comment:
Comment: DiffBind - question about showing significant difference on peaks with 0 fold ch
12 months ago
Rory Stark
★ 5.2k
0
votes
1
reply
1.4k
views
Comment:
Comment: DiffBind - question about showing significant difference on peaks with 0 fold ch
12 months ago
Rory Stark
★ 5.2k
0
votes
1
reply
1.2k
views
Comment:
Comment: DiffBind - question on the use of filtered or unfiltered input data
12 months ago
Rory Stark
★ 5.2k
1
vote
1
reply
930
views
Comment:
Comment: Positive and negative value fold value in ATAC seq using DiffBind
12 months ago
Rory Stark
★ 5.2k
1
vote
1
reply
930
views
Comment:
Comment: Positive and negative value fold value in ATAC seq using DiffBind
12 months ago
Rory Stark
★ 5.2k
1
vote
0
replies
863
views
Comment:
Comment: How to annotate genes from results of DiffBind
13 months ago
Rory Stark
★ 5.2k
1
vote
1
reply
2.8k
views
Comment:
Comment: Help with Error in DiffBind
13 months ago
Rory Stark
★ 5.2k
1
vote
1
reply
2.8k
views
Comment:
Comment: Help with Error in DiffBind
13 months ago
Rory Stark
★ 5.2k
1
vote
0
replies
2.8k
views
Comment:
Comment: Help with Error in DiffBind
13 months ago
Rory Stark
★ 5.2k
1
vote
1
reply
2.8k
views
Comment:
Comment: Help with Error in DiffBind
13 months ago
Rory Stark
★ 5.2k
1
vote
1
reply
2.8k
views
Comment:
Comment: Help with Error in DiffBind
13 months ago
Rory Stark
★ 5.2k
0
votes
1
reply
1.5k
views
Comment:
Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
13 months ago
Rory Stark
★ 5.2k
0
votes
2
replies
1.5k
views
Comment:
Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
13 months ago
Rory Stark
★ 5.2k
0
votes
0
replies
581
views
Comment:
Comment: Using DiffBind Normalization and Contrasting on Fold Change Values
13 months ago
Rory Stark
★ 5.2k
0
votes
2
replies
1.5k
views
Comment:
Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
13 months ago
Rory Stark
★ 5.2k
0
votes
2
replies
1.5k
views
Comment:
Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
13 months ago
Rory Stark
★ 5.2k
0
votes
0
replies
920
views
Comment:
Comment: DiffBind---Normalization problem-spike in or no spike in beforehand?
14 months ago
Rory Stark
★ 5.2k
0
votes
1
reply
2.5k
views
Comment:
Comment: Diffbind dba.analyze Error in d$span : $ operator is invalid for atomic vectors
14 months ago
Rory Stark
★ 5.2k
0
votes
1
reply
1.4k
views
Comment:
Comment: DiffBind:all samples have 0 counts for all genes.
14 months ago
Rory Stark
★ 5.2k
0
votes
1
reply
1.1k
views
Comment:
Comment: Issue in generating a new DBA object with custom counts
15 months ago
Rory Stark
★ 5.2k
0
votes
1
reply
1.1k
views
Comment:
Comment: Question about Diffbind counts
15 months ago
Rory Stark
★ 5.2k
0
votes
0
replies
1.1k
views
Comment:
Comment: Question about Diffbind counts
15 months ago
Rory Stark
★ 5.2k
0
votes
0
replies
1.1k
views
Comment:
Comment: Question about Diffbind counts
15 months ago
Rory Stark
★ 5.2k
0
votes
1
reply
1.1k
views
Comment:
Comment: Question about Diffbind counts
15 months ago
Rory Stark
★ 5.2k
0
votes
1
reply
1.1k
views
Comment:
Comment: Issue in generating a new DBA object with custom counts
15 months ago
Rory Stark
★ 5.2k
0
votes
1
reply
1.1k
views
Comment:
Comment: Question about Diffbind counts
15 months ago
Rory Stark
★ 5.2k
1
vote
0
replies
3.7k
views
Comment:
Comment: BiocParallel error with ChIPQC
15 months ago
Rory Stark
★ 5.2k
0
votes
1
reply
3.7k
views
Comment:
Comment: BiocParallel error with ChIPQC
16 months ago
Rory Stark
★ 5.2k
1
vote
1
reply
1.6k
views
Comment:
Comment: RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
16 months ago
Rory Stark
★ 5.2k
0
votes
0
replies
5.9k
views
Comment:
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
16 months ago
Rory Stark
★ 5.2k
0
votes
1
reply
3.3k
views
Comment:
Comment: New in DiffBind 3.2: dba.plotProfile() - Peak profiles and profile heatmaps
16 months ago
Rory Stark
★ 5.2k
0
votes
1
reply
5.9k
views
Comment:
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
17 months ago
Rory Stark
★ 5.2k
0
votes
1
reply
5.9k
views
Comment:
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
17 months ago
Rory Stark
★ 5.2k
0
votes
0
replies
1.0k
views
Comment:
Comment: DiffBind and peak counts as input
17 months ago
Rory Stark
★ 5.2k
0
votes
1
reply
5.9k
views
Comment:
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
17 months ago
Rory Stark
★ 5.2k
317 results • Page
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