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Comment: Comment: Help with Error in DiffBind
13 months ago Rory Stark ★ 5.2k
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2.9k
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Comment: Comment: Help with Error in DiffBind
13 months ago Rory Stark ★ 5.2k
2
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2.9k
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Answer: Answer: Help with Error in DiffBind
13 months ago Rory Stark ★ 5.2k
1
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0
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2.9k
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Comment: Comment: Help with Error in DiffBind
13 months ago Rory Stark ★ 5.2k
1
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1
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2.9k
views
Comment: Comment: Help with Error in DiffBind
13 months ago Rory Stark ★ 5.2k
0
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0
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872
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Answer: Answer: Multiple issues reading in peak sets with Diffbind
13 months ago Rory Stark ★ 5.2k
1
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1
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2.9k
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Comment: Comment: Help with Error in DiffBind
13 months ago Rory Stark ★ 5.2k
0
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1
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1.1k
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Answer: Answer: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2?
14 months ago Rory Stark ★ 5.2k
0
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1
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1.6k
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Comment: Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
14 months ago Rory Stark ★ 5.2k
2
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0
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1.7k
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Answer: Answer: DiffBind on ATAC seq data
14 months ago Rory Stark ★ 5.2k
1
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1
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2.9k
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Answer: Answer: Help with Error in DiffBind
14 months ago Rory Stark ★ 5.2k
0
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2
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1.6k
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Comment: Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
14 months ago Rory Stark ★ 5.2k
0
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0
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596
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Comment: Comment: Using DiffBind Normalization and Contrasting on Fold Change Values
14 months ago Rory Stark ★ 5.2k
0
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2
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1.6k
views
Comment: Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
14 months ago Rory Stark ★ 5.2k
1
vote
1
reply
596
views
Answer: Answer: Using DiffBind Normalization and Contrasting on Fold Change Values
14 months ago Rory Stark ★ 5.2k
0
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2
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1.6k
views
Comment: Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
14 months ago Rory Stark ★ 5.2k
1
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1
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596
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Answer: Answer: DiffBind spike-in lib.sizes confusion
14 months ago Rory Stark ★ 5.2k
0
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1
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1.6k
views
Answer: Answer: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
14 months ago Rory Stark ★ 5.2k
0
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0
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481
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Answer: Answer: DiffBind---peak region reads or all reads？
14 months ago Rory Stark ★ 5.2k
0
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0
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938
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Comment: Comment: DiffBind---Normalization problem-spike in or no spike in beforehand?
14 months ago Rory Stark ★ 5.2k
0
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1
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2.5k
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Comment: Comment: Diffbind dba.analyze Error in d$span : $ operator is invalid for atomic vectors
14 months ago Rory Stark ★ 5.2k
0
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0
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912
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Answer: Answer: DiffBind differential analysis
14 months ago Rory Stark ★ 5.2k
1
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1
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938
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Answer: Answer: DiffBind---Normalization problem-spike in or no spike in beforehand?
14 months ago Rory Stark ★ 5.2k
0
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0
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669
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Answer: Answer: DiffBind- differentiate between new peaks and gain peaks
15 months ago Rory Stark ★ 5.2k
0
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0
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635
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Answer: Answer: Setting DBA$config$mergeOverlap for Diffbind
15 months ago Rory Stark ★ 5.2k
0
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1
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1.4k
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Comment: Comment: DiffBind:all samples have 0 counts for all genes.
15 months ago Rory Stark ★ 5.2k
0
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0
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572
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Answer: Answer: Diffbind (or maybe DESeq2) Fold clarification
16 months ago Rory Stark ★ 5.2k
0
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1
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1.1k
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Comment: Comment: Issue in generating a new DBA object with custom counts
16 months ago Rory Stark ★ 5.2k
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1
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1.1k
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Comment: Comment: Question about Diffbind counts
16 months ago Rory Stark ★ 5.2k
0
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0
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1.1k
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Comment: Comment: Question about Diffbind counts
16 months ago Rory Stark ★ 5.2k
0
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0
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1.1k
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Comment: Comment: Question about Diffbind counts
16 months ago Rory Stark ★ 5.2k
0
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1
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1.1k
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Comment: Comment: Question about Diffbind counts
16 months ago Rory Stark ★ 5.2k
0
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1
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1.1k
views
Comment: Comment: Issue in generating a new DBA object with custom counts
16 months ago Rory Stark ★ 5.2k
0
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0
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704
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Answer: Answer: Diffbind matrix/batch effect/normalization
16 months ago Rory Stark ★ 5.2k
0
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1
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1.1k
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Comment: Comment: Question about Diffbind counts
16 months ago Rory Stark ★ 5.2k
1
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0
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3.8k
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Comment: Comment: BiocParallel error with ChIPQC
16 months ago Rory Stark ★ 5.2k
0
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0
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909
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Answer: Answer: Minor issue regarding customization of text size in Volcano and Heatmap Plots
16 months ago Rory Stark ★ 5.2k
0
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1
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3.8k
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Comment: Comment: BiocParallel error with ChIPQC
16 months ago Rory Stark ★ 5.2k
0
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0
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1.1k
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Answer: Answer: Issue in generating a new DBA object with custom counts
16 months ago Rory Stark ★ 5.2k
1
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1
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1.7k
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Comment: Comment: RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
16 months ago Rory Stark ★ 5.2k
2
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1
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1.7k
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Answer: Answer: RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
17 months ago Rory Stark ★ 5.2k
0
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0
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873
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Answer: Answer: DiffBind: Error in pv$called[, mask] : subscript out of bounds
17 months ago Rory Stark ★ 5.2k
0
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0
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6.0k
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Comment: Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
17 months ago Rory Stark ★ 5.2k
1
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1
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638
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Answer: Answer: DiffBind Loss and Gain location
17 months ago • updated 16 months ago Rory Stark ★ 5.2k
0
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1
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3.4k
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Comment: Comment: New in DiffBind 3.2: dba.plotProfile() - Peak profiles and profile heatmaps
17 months ago Rory Stark ★ 5.2k
0
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1
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6.0k
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Comment: Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
17 months ago Rory Stark ★ 5.2k
0
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1
reply
6.0k
views
Comment: Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
17 months ago Rory Stark ★ 5.2k
0
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0
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1.0k
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Comment: Comment: DiffBind and peak counts as input
17 months ago Rory Stark ★ 5.2k
0
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1
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794
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Answer: Answer: New to ChipSeq getting 0 peaks using dba()
17 months ago Rory Stark ★ 5.2k
0
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2
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1.2k
views
Answer: Answer: Blacklist error in DiffBind
18 months ago Rory Stark ★ 5.2k
927 results • Page 2 of 19
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