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Answer: Answer: Blacklist error in DiffBind
18 months ago Rory Stark ★ 5.2k
2
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0
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776
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Answer: Answer: Error in DiffBind dba.blacklist & dba.count
18 months ago Rory Stark ★ 5.2k
1
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1
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2.1k
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Answer: Answer: Too much data for Diffbind
18 months ago Rory Stark ★ 5.2k
1
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2
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1.0k
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Answer: Answer: DiffBind and peak counts as input
19 months ago Rory Stark ★ 5.2k
0
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2
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3.4k
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Answer: Answer: DiffBind spike-in normalization
19 months ago Rory Stark ★ 5.2k
1
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0
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2.1k
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Answer: Answer: Normalizing Cut&Tag peak data
19 months ago Rory Stark ★ 5.2k
0
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1
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774
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Answer: Answer: Issue carrying out DiffBind Analysis at a predefined peak set
19 months ago Rory Stark ★ 5.2k
2
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0
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1.7k
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Answer: Answer: DiffBind: Error in if (res$config$bCorPlot) { : the condition has length > 1
20 months ago Rory Stark ★ 5.2k
0
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1
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1.9k
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Answer: Answer: CHIPQC error regarding BiocParallel
21 months ago Rory Stark ★ 5.2k
1
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1
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969
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Answer: Answer: Could it be possible to get an older version of ChIPQC?
21 months ago Rory Stark ★ 5.2k
1
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3
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3.8k
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Answer: Answer: BiocParallel error with ChIPQC
21 months ago Rory Stark ★ 5.2k
1
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2
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908
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Answer: Answer: Low Differentially Bound Sites found with DiffBind
22 months ago Rory Stark ★ 5.2k
0
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0
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1.4k
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Answer: Answer: Diffbind analysis of ATAC-seq data
22 months ago Rory Stark ★ 5.2k
1
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1
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1.5k
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Answer: Answer: How many features an ExpressionSet can contain ?
23 months ago Rory Stark ★ 5.2k
0
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0
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743
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Answer: Answer: Diffbind: different results on the same sample depending on contrast parameters
23 months ago Rory Stark ★ 5.2k
0
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0
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1.0k
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Answer: Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro
2.0 years ago Rory Stark ★ 5.2k
1
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1
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865
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Answer: Answer: Diffbind dba$binding slot finding Chr21 for an MM10 dataset
2.0 years ago Rory Stark ★ 5.2k
0
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1
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1.0k
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Answer: Answer: DiffBind on static peak set for all samples
2.0 years ago Rory Stark ★ 5.2k
2
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1
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972
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Answer: Answer: DiffBind always reverts to default normalization
2.0 years ago Rory Stark ★ 5.2k
0
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0
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880
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Answer: Answer: Input peak set for DiffBind should be all peaks or FDR filtered?
2.1 years ago Rory Stark ★ 5.2k
0
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0
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2.1k
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Answer: Answer: Retrieve loadings/eigenvalues for PCAs using DiffBind's dba.plotPCA
2.1 years ago Rory Stark ★ 5.2k
1
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0
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933
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Answer: Answer: DiffBind drop out some peaks
2.1 years ago Rory Stark ★ 5.2k
1
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0
replies
1.2k
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Answer: Answer: Normalize ChIP-seq samples with different signal-to-noise ratio
2.2 years ago Rory Stark ★ 5.2k
0
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1
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2.8k
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Answer: Answer: Questions about DiffBind loaded peaks and re-count reads
2.2 years ago Rory Stark ★ 5.2k
2
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1
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1.5k
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Answer: Answer: How to get 3/4 peak overlap in DiffBind?
2.3 years ago Rory Stark ★ 5.2k
0
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0
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3.3k
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Answer: Answer: How to get all possible comparisons in DiffBind
2.3 years ago Rory Stark ★ 5.2k
0
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2
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2.1k
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Answer: Answer: dba.count() error when re-centering peaks
2.3 years ago Rory Stark ★ 5.2k
0
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1
reply
654
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Answer: Answer: `dbs.all` object in the vignette
2.3 years ago Rory Stark ★ 5.2k
0
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1
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2.3k
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Answer: Answer: dba.count error
2.3 years ago Rory Stark ★ 5.2k
0
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0
replies
475
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Answer: Answer: DiffBind issue: zero values for all peaks in one chromosome
2.3 years ago Rory Stark ★ 5.2k
0
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1
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1.5k
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Answer: Answer: DiffBind dba.count Error in if (sum(tokeep) < length(tokeep))
2.3 years ago Rory Stark ★ 5.2k
0
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1
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3.3k
views
Answer: Answer: How to get all possible comparisons in DiffBind
2.3 years ago Rory Stark ★ 5.2k
2
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2
replies
851
views
Answer: Answer: Not able to replicated Diffbind example dataset.
2.3 years ago Rory Stark ★ 5.2k
0
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1
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1.5k
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Answer: Answer: DiffBind: Values of Called1 and Called2 do not appear to coincide with input pea
2.3 years ago Rory Stark ★ 5.2k
1
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0
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1.0k
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Answer: Answer: DiffBind scoreCol value question
2.4 years ago Rory Stark ★ 5.2k
0
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0
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790
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Answer: Answer: diffbind binding affinity matrix
2.4 years ago Rory Stark ★ 5.2k
0
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0
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2.2k
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Answer: Answer: DiffBind bUseSummarizeOverlaps error - the rownames and colnames of the supplied
2.4 years ago Rory Stark ★ 5.2k
3
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1
reply
2.4k
views
Answer: Answer: dba.contrast in DiffBind
2.4 years ago Rory Stark ★ 5.2k
0
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0
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1.3k
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Answer: Answer: how to select specific genes from heatmap of differentially accessible regions o
2.6 years ago Rory Stark ★ 5.2k
0
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0
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674
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Answer: Answer: Can DiffBind do differential analysis for un-paired peaksets?
2.7 years ago Rory Stark ★ 5.2k
0
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1
reply
1.3k
views
Answer: Answer: Diffbind dba.plotProfile attempt to select less than one element in OneIndex
2.7 years ago Rory Stark ★ 5.2k
0
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1
reply
829
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Answer: Answer: DiifBind_DBA_report
2.7 years ago Rory Stark ★ 5.2k
2
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0
replies
893
views
Answer: Answer: Diffbind: differences between design vs no design (same comparison)?
2.7 years ago Rory Stark ★ 5.2k
1
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1
reply
760
views
Answer: Answer: DiffBind fold parameter vs. IfcThreshold in DESeq2
2.7 years ago Rory Stark ★ 5.2k
3
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2
replies
1.4k
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Answer: Answer: DiffBind (Error in if (DBA$config$parallelPackage))
2.7 years ago Rory Stark ★ 5.2k
0
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1
reply
730
views
Answer: Answer: DiffBind Occupancy analysis
2.8 years ago Rory Stark ★ 5.2k
0
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1
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1.3k
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Answer: Answer: issue with DiffBind dba.count
2.8 years ago Rory Stark ★ 5.2k
2
votes
1
reply
3.4k
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Answer: Answer: Is it possible to change how DiffBind merge peaks?
2.8 years ago Rory Stark ★ 5.2k
0
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1
reply
6.0k
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Answer: Answer: DiffBind GreyListChIP error: Error: BiocParallel errors
2.8 years ago Rory Stark ★ 5.2k
0
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1
reply
1.1k
views
Answer: Answer: DiffBind
2.8 years ago Rory Stark ★ 5.2k
568 results • Page 2 of 12
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