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2
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1
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890
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Answer: A: MEDIPS results differ with sample ordering
4.0 years ago Lukas Chavez ▴ 570
1
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0
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811
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Answer: A: MEDIPS - Error in MEDIPS.CpGenrich
4.1 years ago Lukas Chavez ▴ 570
1
vote
0
replies
727
views
Answer: A: MEDIPS.CpGenrich now that RangedData is deprecated
4.2 years ago Lukas Chavez ▴ 570
2
votes
1
reply
1.3k
views
Answer: A: Extracting normalized counts in MEDIPS
4.4 years ago Lukas Chavez ▴ 570
1
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0
replies
873
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Answer: A: sva correction for MEDIPS
5.3 years ago Lukas Chavez ▴ 570
1
vote
1
reply
963
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Answer: A: Comparing more than 2 experimental groups with MEDIPS?
5.4 years ago Lukas Chavez ▴ 570
0
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1
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1.1k
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Answer: A: create.set on MEDIPS
5.4 years ago Lukas Chavez ▴ 570
0
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1
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1.2k
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Comment: C: CpG density in MEDIPS
5.5 years ago Lukas Chavez ▴ 570
0
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0
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1.2k
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Answer: A: CpG density in MEDIPS
5.5 years ago Lukas Chavez ▴ 570
0
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1
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1.1k
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Answer: A: Coupling set error in MEDIPS
5.5 years ago Lukas Chavez ▴ 570
0
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1
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1.3k
views
Answer: A: MEDIPS - Annotation output explanation
6.0 years ago Lukas Chavez ▴ 570
0
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0
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1.9k
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Comment: C: MEDIP: Problem with MEDIPS.createSet
6.1 years ago Lukas Chavez ▴ 570
0
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1
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1.9k
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Comment: C: MEDIP: Problem with MEDIPS.createSet
6.1 years ago Lukas Chavez ▴ 570
0
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1
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1.9k
views
Answer: A: MEDIP: Problem with MEDIPS.createSet
6.1 years ago Lukas Chavez ▴ 570
2
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0
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1.2k
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Answer: A: RMS question in MEDIPS
6.2 years ago Lukas Chavez ▴ 570
0
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0
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1.9k
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Comment: C: MeDIPS: warning when using "ttest" settings in MEDIPS.meth
6.9 years ago Lukas Chavez ▴ 570
1
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0
replies
1.2k
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Answer: A: Window size for MEDIPS
7.0 years ago Lukas Chavez ▴ 570
0
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0
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1.1k
views
Answer: A: How does the function MEDIPS.CpGenrich work?
7.0 years ago Lukas Chavez ▴ 570
0
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0
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1.4k
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Answer: A: Error raised during execution of MEDIPS package
7.1 years ago Lukas Chavez ▴ 570
0
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0
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1.1k
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Answer: A: MEDIPS: case study with different replicate numbers of control and case
7.3 years ago Lukas Chavez ▴ 570
0
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0
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1.1k
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Answer: A: Insertion size when using 'paired' in MEDIPS.createSet()
7.4 years ago Lukas Chavez ▴ 570
0
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0
replies
1.2k
views
Answer: A: MEDIPS - do reads without CG's get filtered out prior to analysis?
7.5 years ago Lukas Chavez ▴ 570
0
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0
replies
1.1k
views
Answer: A: How does the 'paired' argument works in MeDIPS 1.23.2
7.6 years ago Lukas Chavez ▴ 570
0
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1
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1.9k
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Comment: C: MeDIPS: warning when using "ttest" settings in MEDIPS.meth
7.7 years ago Lukas Chavez ▴ 570
0
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0
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1.2k
views
Answer: A: Gene Symbol Annotation
7.7 years ago Lukas Chavez ▴ 570
0
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1
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1.9k
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Answer: A: MeDIPS: warning when using "ttest" settings in MEDIPS.meth
7.7 years ago Lukas Chavez ▴ 570
0
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0
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1.1k
views
Answer: A: TMM Normalization within MEDIPS ups some zero counts, is this normal?
7.7 years ago Lukas Chavez ▴ 570
1
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0
replies
1.5k
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Answer: A: MeDIPS and use of the 'bwa' parameter
7.7 years ago Lukas Chavez ▴ 570
1
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1
reply
1.4k
views
Answer: A: Alternative methylation contexts with MEDIPS?
7.7 years ago Lukas Chavez ▴ 570
0
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0
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1.6k
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Comment: C: MEDIPS - input
7.8 years ago Lukas Chavez ▴ 570
0
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0
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1.6k
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Comment: C: MEDIPS - input
7.8 years ago Lukas Chavez ▴ 570
0
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0
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1.6k
views
Answer: A: MEDIPS - input
7.8 years ago Lukas Chavez ▴ 570
0
votes
0
replies
1.7k
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Answer: A: MeQA and MEDIPS
8.0 years ago Lukas Chavez ▴ 570
0
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1
reply
2.0k
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Comment: C: MEDIPS: Number of windows tested in Paired-end data set
8.0 years ago Lukas Chavez ▴ 570
0
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1
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2.0k
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Comment: C: MEDIPS: Number of windows tested in Paired-end data set
8.0 years ago Lukas Chavez ▴ 570
0
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1
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1.6k
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Comment: C: MEDIPS genome Vs createROIset significance issue
8.2 years ago Lukas Chavez ▴ 570
0
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0
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1.6k
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Comment: C: MEDIPS genome Vs createROIset significance issue
8.2 years ago Lukas Chavez ▴ 570
0
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0
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1.6k
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Answer: A: MEDIPS genome Vs createROIset significance issue
8.2 years ago Lukas Chavez ▴ 570
0
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0
replies
1.7k
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Answer: A: Error in MEDIPS.calibrationCurve looking for different methylation profiles
8.2 years ago Lukas Chavez ▴ 570
0
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0
replies
1.3k
views
Answer: A: How to do FDR p.adj manually on "mr.edgeR object" from MEDIPS package?
8.2 years ago Lukas Chavez ▴ 570
2
votes
0
replies
1.2k
views
Answer: A: How createSet from reduced "paire-ed" sequencing on MeDIPS?
8.2 years ago Lukas Chavez ▴ 570
0
votes
0
replies
1.1k
views
Answer: A: MEDIPS stable version problem
8.3 years ago Lukas Chavez ▴ 570
0
votes
1
reply
2.4k
views
Comment: C: Error with MEDIPS.createSet in queryHits
8.5 years ago Lukas Chavez ▴ 570
1
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2
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2.4k
views
Answer: A: Error with MEDIPS.createSet in queryHits
updated 8.5 years ago by 25k • written 8.5 years ago by ▴ 570
0
votes
0
replies
900
views
Answer: A: MEDIPS test data lack of 4 files
8.8 years ago Lukas Chavez ▴ 570
1
vote
1
reply
2.2k
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Answer: A: MEDIPS vs MACS: why does MEDIPS generate more conservative p-values
8.9 years ago Lukas Chavez ▴ 570
0
votes
1
reply
1.3k
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Answer: A: MEDIPS: Any way to get more columns/data from MEDIPS.mergeFrames?
9.0 years ago Lukas Chavez ▴ 570
1
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0
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1.5k
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Answer: A: MEDIPS - RPKM
9.1 years ago Lukas Chavez ▴ 570
0
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0
replies
1.1k
views
Answer: A: MEDIPS : Populating fragments from Paired End reads
9.1 years ago Lukas Chavez ▴ 570
1
vote
1
reply
1.7k
views
Comment: C: MEDIPS: Output appears to be truncated
9.1 years ago Lukas Chavez ▴ 570
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