Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
1
reply
46
views
Answer: Answer: DESeq2 design for haplotype MPRA
5 hours ago Michael Love 43k
0
votes
0
replies
288
views
Comment: Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
4 weeks ago Michael Love 43k
0
votes
1
reply
288
views
Answer: Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
5 weeks ago Michael Love 43k
0
votes
0
replies
457
views
Answer: Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi
5 weeks ago Michael Love 43k
0
votes
0
replies
7.2k
views
Comment: Comment: DESeq2 on NanoString Data
7 weeks ago Michael Love 43k
1
vote
0
replies
896
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
8 weeks ago Michael Love 43k
1
vote
1
reply
896
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
8 weeks ago Michael Love 43k
1
vote
1
reply
896
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
8 weeks ago Michael Love 43k
0
votes
1
reply
896
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
8 weeks ago Michael Love 43k
0
votes
3
replies
896
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
8 weeks ago Michael Love 43k
1
vote
1
reply
437
views
Comment: Comment: Very different log2 Fold changes with DESeq2 and explict calculation
8 weeks ago Michael Love 43k
1
vote
1
reply
437
views
Answer: Answer: Very different log2 Fold changes with DESeq2 and explict calculation
8 weeks ago Michael Love 43k
0
votes
1
reply
896
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
8 weeks ago Michael Love 43k
0
votes
1
reply
896
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
8 weeks ago Michael Love 43k
0
votes
1
reply
219
views
Answer: Answer: DESeq2 inconsistent fits depending on model design with interacting factors
8 weeks ago Michael Love 43k
0
votes
2
replies
896
views
Answer: Answer: DESeq2 used with zinbwave weights - Differences on contrasts calculations
10 weeks ago Michael Love 43k
0
votes
0
replies
808
views
Comment: Comment: Using shrunken LFC and s-value from DESeq2 as DGE results
10 weeks ago Michael Love 43k
1
vote
0
replies
3.9k
views
Comment: Comment: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
11 weeks ago Michael Love 43k
0
votes
0
replies
11k
views
Comment: Comment: DESeq2: Continuous and discreate variables in the design
11 weeks ago Michael Love 43k
0
votes
1
reply
808
views
Answer: Answer: Using shrunken LFC and s-value from DESeq2 as DGE results
11 weeks ago Michael Love 43k
0
votes
1
reply
3.9k
views
Comment: Comment: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
3 months ago Michael Love 43k
0
votes
1
reply
3.9k
views
Answer: Answer: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
3 months ago Michael Love 43k
0
votes
0
replies
648
views
Answer: Answer: Which GTF file to use for creation of tx2gene files?
3 months ago Michael Love 43k
1
vote
0
replies
2.1k
views
Answer: Answer: DESeq2 LRT: Testing Effects of Treatment1, Treatment2, and Their Interaction in
3 months ago Michael Love 43k
0
votes
0
replies
1.1k
views
Answer: Answer: 6 groups to compare DESeq2 (Wald vs LRT)
3 months ago Michael Love 43k
2
votes
0
replies
3.7k
views
Answer: Answer: DESeq2 empirical bayes: variance of the prior for log fold changes (LFC)
4 months ago Michael Love 43k
1
vote
1
reply
2.0k
views
Answer: Answer: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an
4 months ago Michael Love 43k
0
votes
0
replies
830
views
Answer: Answer: Workflow to Analyse DNA Sequence specify gene expression in a fungus under stres
4 months ago Michael Love 43k
0
votes
0
replies
385
views
Answer: Answer: Unclear DEseq2 replaceOutliers error message
4 months ago Michael Love 43k
0
votes
0
replies
1.4k
views
Comment: Comment: ERCC Spike-In controls being discarded during Tximeta process:
4 months ago Michael Love 43k
0
votes
0
replies
2.4k
views
Comment: Comment: DeSeq Strategies for run to run Replication
4 months ago Michael Love 43k
1
vote
0
replies
3.9k
views
Comment: Comment: Cannot extract size factor from DESeq2 analysis
4 months ago Michael Love 43k
0
votes
0
replies
491
views
Answer: Answer: Difference in DESeq2 output and tidybulk DESeq2 method
4 months ago Michael Love 43k
2
votes
1
reply
2.0k
views
Answer: Answer: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
4 months ago Michael Love 43k
0
votes
1
reply
1.4k
views
Answer: Answer: ERCC Spike-In controls being discarded during Tximeta process:
4 months ago Michael Love 43k
0
votes
0
replies
3.0k
views
Answer: Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
5 months ago • updated 4 months ago Michael Love 43k
0
votes
0
replies
1.1k
views
Answer: Answer: How do I set up my DESeq analysis when I know a few vehicle control samples prov
5 months ago Michael Love 43k
0
votes
0
replies
687
views
Answer: Answer: Differing results with DESeq2
5 months ago Michael Love 43k
0
votes
1
reply
2.4k
views
Comment: Comment: DeSeq Strategies for run to run Replication
5 months ago Michael Love 43k
0
votes
0
replies
1.9k
views
Comment: Comment: compute_fasta_digest does not match Salmon index hash
6 months ago Michael Love 43k
0
votes
1
reply
1.9k
views
Answer: Answer: compute_fasta_digest does not match Salmon index hash
6 months ago Michael Love 43k
1
vote
1
reply
1.6k
views
Comment: Comment: Using TPM from tximport of Salmon output for singscore
6 months ago Michael Love 43k
0
votes
1
reply
6.5k
views
Comment: Comment: DESeq2 model - How to test case/control time course model when taking account wi
6 months ago Michael Love 43k
0
votes
0
replies
2.3k
views
Comment: Comment: deseq2 lfc shrinkage with few DEGs
6 months ago Michael Love 43k
0
votes
0
replies
18k
views
Comment: Comment: DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
6 months ago Michael Love 43k
0
votes
0
replies
1.1k
views
Comment: Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana
6 months ago Michael Love 43k
2
votes
1
reply
1.6k
views
Answer: Answer: Using TPM from tximport of Salmon output for singscore
6 months ago Michael Love 43k
0
votes
0
replies
683
views
Comment: Comment: Removing UTR from GTF for gene quantification
7 months ago Michael Love 43k
3
votes
1
reply
1.5k
views
Answer: Answer: Surprising behavior for DEXseq dispersion estimate plot?
7 months ago Michael Love 43k
0
votes
0
replies
420
views
Answer: Answer: DESeq use in lipidomic analysis
7 months ago Michael Love 43k
8,156 results • Page 1 of 164
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6