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264
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Comment: Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq
15 days ago Michael Love 43k
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1
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264
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Comment: Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq
16 days ago Michael Love 43k
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1
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264
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Answer: Answer: Lowly expressed genes reported as significant when using lfcThreshold in DESeq
16 days ago Michael Love 43k
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0
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210
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Answer: Answer: lfc shrinkage estimator in DESeq2
16 days ago Michael Love 43k
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1
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848
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Comment: Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
19 days ago Michael Love 43k
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0
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848
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Comment: Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
21 days ago Michael Love 43k
0
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0
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848
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Comment: Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
21 days ago Michael Love 43k
0
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1
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848
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Answer: Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2
22 days ago Michael Love 43k
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1
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653
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Comment: Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
23 days ago Michael Love 43k
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1
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653
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Comment: Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
9 weeks ago Michael Love 43k
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1
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653
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Answer: Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
9 weeks ago Michael Love 43k
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1
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344
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Comment: Comment: Getting a large intercept with DESeq2
12 weeks ago Michael Love 43k
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0
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274
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Answer: Answer: Question about collapsing ASVs by genus level during DESeq2 analysis
3 months ago Michael Love 43k
1
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0
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64k
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Comment: Comment: deseq2 filter the low counts
3 months ago Michael Love 43k
0
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1
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64k
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Comment: Comment: deseq2 filter the low counts
3 months ago Michael Love 43k
0
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0
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590
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Comment: Comment: DESeq2 interactions
3 months ago Michael Love 43k
2
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1
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665
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Answer: Answer: DESeq2 for candidate gene analysis
3 months ago Michael Love 43k
2
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1
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627
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Answer: Answer: DESeq2 design for haplotype MPRA
4 months ago Michael Love 43k
0
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0
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444
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Comment: Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
5 months ago Michael Love 43k
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1
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444
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Answer: Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
5 months ago Michael Love 43k
0
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0
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898
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Answer: Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi
5 months ago Michael Love 43k
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0
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7.5k
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Comment: Comment: DESeq2 on NanoString Data
5 months ago Michael Love 43k
1
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0
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1.5k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
5 months ago Michael Love 43k
1
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1
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1.5k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
5 months ago Michael Love 43k
1
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1
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1.5k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
5 months ago Michael Love 43k
0
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1
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1.5k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
5 months ago Michael Love 43k
0
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3
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1.5k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
5 months ago Michael Love 43k
1
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1
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694
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Comment: Comment: Very different log2 Fold changes with DESeq2 and explict calculation
6 months ago Michael Love 43k
1
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1
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694
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Answer: Answer: Very different log2 Fold changes with DESeq2 and explict calculation
6 months ago Michael Love 43k
0
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1
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1.5k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
6 months ago Michael Love 43k
0
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1
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1.5k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
6 months ago Michael Love 43k
0
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1
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365
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Answer: Answer: DESeq2 inconsistent fits depending on model design with interacting factors
6 months ago Michael Love 43k
0
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2
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1.5k
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Answer: Answer: DESeq2 used with zinbwave weights - Differences on contrasts calculations
6 months ago Michael Love 43k
0
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0
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1.1k
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Comment: Comment: Using shrunken LFC and s-value from DESeq2 as DGE results
6 months ago Michael Love 43k
1
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0
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5.4k
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Comment: Comment: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
6 months ago Michael Love 43k
0
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0
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11k
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Comment: Comment: DESeq2: Continuous and discreate variables in the design
6 months ago Michael Love 43k
0
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1
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1.1k
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Answer: Answer: Using shrunken LFC and s-value from DESeq2 as DGE results
6 months ago Michael Love 43k
0
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1
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5.4k
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Comment: Comment: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
7 months ago Michael Love 43k
0
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1
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5.4k
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Answer: Answer: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
7 months ago Michael Love 43k
0
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0
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789
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Answer: Answer: Which GTF file to use for creation of tx2gene files?
7 months ago Michael Love 43k
1
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0
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2.3k
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Answer: Answer: DESeq2 LRT: Testing Effects of Treatment1, Treatment2, and Their Interaction in
7 months ago Michael Love 43k
0
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0
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1.3k
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Answer: Answer: 6 groups to compare DESeq2 (Wald vs LRT)
7 months ago Michael Love 43k
2
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0
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3.9k
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Answer: Answer: DESeq2 empirical bayes: variance of the prior for log fold changes (LFC)
8 months ago Michael Love 43k
1
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1
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2.2k
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Answer: Answer: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an
8 months ago Michael Love 43k
0
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0
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932
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Answer: Answer: Workflow to Analyse DNA Sequence specify gene expression in a fungus under stres
8 months ago Michael Love 43k
0
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0
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501
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Answer: Answer: Unclear DEseq2 replaceOutliers error message
8 months ago Michael Love 43k
0
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0
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1.7k
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Comment: Comment: ERCC Spike-In controls being discarded during Tximeta process:
8 months ago Michael Love 43k
0
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0
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2.6k
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Comment: Comment: DeSeq Strategies for run to run Replication
8 months ago Michael Love 43k
1
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0
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4.1k
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Comment: Comment: Cannot extract size factor from DESeq2 analysis
8 months ago Michael Love 43k
0
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0
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670
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Answer: Answer: Difference in DESeq2 output and tidybulk DESeq2 method
8 months ago Michael Love 43k
8,173 results • Page 1 of 164
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