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Answer: Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square
10 hours ago Michael Love 43k
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309
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Answer: Answer: lfcShrink and alpha value
3 days ago Michael Love 43k
1
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170
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Answer: Answer: DESeq2- merging technical vs biological replicates
5 days ago Michael Love 43k
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1
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309
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Answer: Answer: lfcShrink and alpha value
5 days ago Michael Love 43k
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106
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Answer: Answer: DESeq2 dispersion estimates fitting drastically different based on explanatory v
5 days ago Michael Love 43k
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456
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Answer: Answer: Deseq2 res Function
14 days ago Michael Love 43k
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328
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Comment: Comment: Identical samples after deseq2 batch effect removal
15 days ago Michael Love 43k
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2
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328
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Comment: Comment: Identical samples after deseq2 batch effect removal
16 days ago Michael Love 43k
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328
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Answer: Answer: Identical samples after deseq2 batch effect removal
16 days ago Michael Love 43k
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2.2k
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Comment: Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
23 days ago Michael Love 43k
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203
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Answer: Answer: Is my time course analysis with DESeq2 valid?
23 days ago Michael Love 43k
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5.2k
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Comment: Comment: Tximport with RSEM error
25 days ago Michael Love 43k
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910
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Comment: Comment: Volcano plot has many values around zero
28 days ago Michael Love 43k
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348
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Answer: Answer: DESeq2 interaction between cancer cells and microenvironment cells
4 weeks ago Michael Love 43k
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600
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Comment: Comment: DESeq Input from Salmon + tximport/tximeta
4 weeks ago Michael Love 43k
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600
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Answer: Answer: DESeq Input from Salmon + tximport/tximeta
4 weeks ago Michael Love 43k
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1.3k
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Comment: Comment: Question about using LRT test for time course experiments with DESeq2
5 weeks ago Michael Love 43k
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1.3k
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Answer: Answer: Question about using LRT test for time course experiments with DESeq2
5 weeks ago Michael Love 43k
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324
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Answer: Answer: Deseq to output continous sequencing data
5 weeks ago Michael Love 43k
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779
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Answer: Answer: Adjusted p-values become NA when sub-setting samples
5 weeks ago Michael Love 43k
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779
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Comment: Comment: Adjusted p-values become NA when sub-setting samples
5 weeks ago Michael Love 43k
3
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865
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Answer: Answer: Robust way of dealing with low number of samples for Differential Gene Expressio
5 weeks ago Michael Love 43k
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6.4k
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Comment: Comment: DESeq2 with unbalanced experimental design
6 weeks ago Michael Love 43k
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0
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813
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Comment: Comment: [DESeq2] Introduce a bias in DESeq2
6 weeks ago Michael Love 43k
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813
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Comment: Comment: [DESeq2] Introduce a bias in DESeq2
6 weeks ago Michael Love 43k
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813
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Comment: Comment: [DESeq2] Introduce a bias in DESeq2
6 weeks ago Michael Love 43k
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334
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Answer: Answer: ESTMATE, MCPcounter, EPIC, xCell input
6 weeks ago Michael Love 43k
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278
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Answer: Answer: Should zero counts in some replicates lead to inflated p-values?
6 weeks ago Michael Love 43k
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1.4k
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Comment: Comment: DESeq2 unable to handle large count values
6 weeks ago Michael Love 43k
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1.0k
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Comment: Comment: Analysis of large RNA-Seq Datasets
7 weeks ago Michael Love 43k
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737
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Comment: Comment: DESeq2 - interactions when using factors concatenated into group
7 weeks ago Michael Love 43k
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2
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737
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Answer: Answer: DESeq2 - interactions when using factors concatenated into group
7 weeks ago Michael Love 43k
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0
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191
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Answer: Answer: 2 factor analysis using DESeq2 but the result is not what I expected from the de
7 weeks ago Michael Love 43k
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1
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714
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Comment: Comment: New to Deseq2 - DEG questions / MA plot
7 weeks ago Michael Love 43k
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273
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Answer: Answer: How does deseq2 address intra group variance when calculating log2foldchange
7 weeks ago Michael Love 43k
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202
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Comment: Comment: Using Normalized Counts in DESeq2
7 weeks ago Michael Love 43k
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1
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486
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Answer: Answer: Mostly increased counts in differentially accessible peaks using DESeq2
8 weeks ago Michael Love 43k
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0
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176
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Answer: Answer: How to set filtering standard for low-expression genes in ImpulseDE2
8 weeks ago Michael Love 43k
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1
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410
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Comment: Comment: RNASeq Time Course Question
8 weeks ago Michael Love 43k
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1
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410
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Answer: Answer: RNASeq Time Course Question
8 weeks ago Michael Love 43k
0
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0
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726
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Comment: Comment: Highly DE genes but small count difference within conditions
8 weeks ago Michael Love 43k
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1
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813
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Answer: Answer: [DESeq2] Introduce a bias in DESeq2
8 weeks ago Michael Love 43k
0
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1
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1.2k
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Comment: Comment: DEseq2 time-series design
8 weeks ago Michael Love 43k
0
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1
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726
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Comment: Comment: Highly DE genes but small count difference within conditions
8 weeks ago Michael Love 43k
0
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1
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726
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Comment: Comment: Highly DE genes but small count difference within conditions
8 weeks ago Michael Love 43k
0
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1
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726
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Comment: Comment: Highly DE genes but small count difference within conditions
8 weeks ago Michael Love 43k
1
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1
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726
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Answer: Answer: Highly DE genes but small count difference within conditions
8 weeks ago Michael Love 43k
0
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1
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281
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Answer: Answer: RNA-Seq p value range variation
9 weeks ago Michael Love 43k
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0
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364
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Comment: Comment: How can I obtain DEGs that are resulted from using salmon in alignment-based mod
9 weeks ago Michael Love 43k
0
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0
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456
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Answer: Answer: Poor dispersion fit in DESeq2
10 weeks ago Michael Love 43k
8,081 results • Page 1 of 162
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