Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
226
views
Comment: Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
22 days ago Michael Love 43k
0
votes
1
reply
226
views
Answer: Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
22 days ago Michael Love 43k
0
votes
1
reply
227
views
Comment: Comment: Getting a large intercept with DESeq2
6 weeks ago Michael Love 43k
0
votes
0
replies
245
views
Answer: Answer: Question about collapsing ASVs by genus level during DESeq2 analysis
7 weeks ago Michael Love 43k
1
vote
0
replies
62k
views
Comment: Comment: deseq2 filter the low counts
8 weeks ago Michael Love 43k
0
votes
1
reply
62k
views
Comment: Comment: deseq2 filter the low counts
8 weeks ago Michael Love 43k
0
votes
0
replies
505
views
Comment: Comment: DESeq2 interactions
8 weeks ago Michael Love 43k
2
votes
1
reply
623
views
Answer: Answer: DESeq2 for candidate gene analysis
9 weeks ago Michael Love 43k
2
votes
1
reply
528
views
Answer: Answer: DESeq2 design for haplotype MPRA
10 weeks ago Michael Love 43k
0
votes
0
replies
385
views
Comment: Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
3 months ago Michael Love 43k
0
votes
1
reply
385
views
Answer: Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
3 months ago Michael Love 43k
0
votes
0
replies
727
views
Answer: Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi
3 months ago Michael Love 43k
0
votes
0
replies
7.3k
views
Comment: Comment: DESeq2 on NanoString Data
4 months ago Michael Love 43k
1
vote
0
replies
1.2k
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
1
vote
1
reply
1.2k
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
1
vote
1
reply
1.2k
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
0
votes
1
reply
1.2k
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
0
votes
3
replies
1.2k
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
1
vote
1
reply
625
views
Comment: Comment: Very different log2 Fold changes with DESeq2 and explict calculation
4 months ago Michael Love 43k
1
vote
1
reply
625
views
Answer: Answer: Very different log2 Fold changes with DESeq2 and explict calculation
4 months ago Michael Love 43k
0
votes
1
reply
1.2k
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
0
votes
1
reply
1.2k
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
0
votes
1
reply
309
views
Answer: Answer: DESeq2 inconsistent fits depending on model design with interacting factors
4 months ago Michael Love 43k
0
votes
2
replies
1.2k
views
Answer: Answer: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
0
votes
0
replies
930
views
Comment: Comment: Using shrunken LFC and s-value from DESeq2 as DGE results
4 months ago Michael Love 43k
1
vote
0
replies
4.8k
views
Comment: Comment: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
5 months ago Michael Love 43k
0
votes
0
replies
11k
views
Comment: Comment: DESeq2: Continuous and discreate variables in the design
5 months ago Michael Love 43k
0
votes
1
reply
930
views
Answer: Answer: Using shrunken LFC and s-value from DESeq2 as DGE results
5 months ago Michael Love 43k
0
votes
1
reply
4.8k
views
Comment: Comment: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
6 months ago Michael Love 43k
0
votes
1
reply
4.8k
views
Answer: Answer: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
6 months ago Michael Love 43k
0
votes
0
replies
754
views
Answer: Answer: Which GTF file to use for creation of tx2gene files?
6 months ago Michael Love 43k
1
vote
0
replies
2.2k
views
Answer: Answer: DESeq2 LRT: Testing Effects of Treatment1, Treatment2, and Their Interaction in
6 months ago Michael Love 43k
0
votes
0
replies
1.2k
views
Answer: Answer: 6 groups to compare DESeq2 (Wald vs LRT)
6 months ago Michael Love 43k
2
votes
0
replies
3.8k
views
Answer: Answer: DESeq2 empirical bayes: variance of the prior for log fold changes (LFC)
6 months ago Michael Love 43k
1
vote
1
reply
2.1k
views
Answer: Answer: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an
7 months ago Michael Love 43k
0
votes
0
replies
872
views
Answer: Answer: Workflow to Analyse DNA Sequence specify gene expression in a fungus under stres
7 months ago Michael Love 43k
0
votes
0
replies
446
views
Answer: Answer: Unclear DEseq2 replaceOutliers error message
7 months ago Michael Love 43k
0
votes
0
replies
1.6k
views
Comment: Comment: ERCC Spike-In controls being discarded during Tximeta process:
7 months ago Michael Love 43k
0
votes
0
replies
2.5k
views
Comment: Comment: DeSeq Strategies for run to run Replication
7 months ago Michael Love 43k
1
vote
0
replies
4.0k
views
Comment: Comment: Cannot extract size factor from DESeq2 analysis
7 months ago Michael Love 43k
0
votes
0
replies
611
views
Answer: Answer: Difference in DESeq2 output and tidybulk DESeq2 method
7 months ago Michael Love 43k
2
votes
1
reply
2.1k
views
Answer: Answer: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
7 months ago Michael Love 43k
0
votes
1
reply
1.6k
views
Answer: Answer: ERCC Spike-In controls being discarded during Tximeta process:
7 months ago Michael Love 43k
1
vote
0
replies
3.2k
views
Answer: Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
7 months ago Michael Love 43k
0
votes
0
replies
1.2k
views
Answer: Answer: How do I set up my DESeq analysis when I know a few vehicle control samples prov
8 months ago Michael Love 43k
0
votes
0
replies
750
views
Answer: Answer: Differing results with DESeq2
8 months ago Michael Love 43k
0
votes
1
reply
2.5k
views
Comment: Comment: DeSeq Strategies for run to run Replication
8 months ago Michael Love 43k
0
votes
0
replies
2.0k
views
Comment: Comment: compute_fasta_digest does not match Salmon index hash
8 months ago Michael Love 43k
0
votes
1
reply
2.0k
views
Answer: Answer: compute_fasta_digest does not match Salmon index hash
8 months ago Michael Love 43k
1
vote
1
reply
1.7k
views
Comment: Comment: Using TPM from tximport of Salmon output for singscore
9 months ago Michael Love 43k
8,164 results • Page 1 of 164
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6