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Answer: Answer: ERROR: unable to find an inherited method for function ‘dispersions<-’ for signa
2 hours ago Michael Love 35k
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94
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Comment: Comment: Test if a gene is NOT differentially expressed in DESeq2?
1 day ago Michael Love 35k
1
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0
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51
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Answer: Answer: Correct use of Likelihood Ratio Test and LFC Shrinkage
1 day ago Michael Love 35k
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1
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94
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Comment: Comment: Test if a gene is NOT differentially expressed in DESeq2?
1 day ago Michael Love 35k
0
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56
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Answer: Answer: Removing paired samples for DESeq2 analysis
1 day ago Michael Love 35k
0
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124
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Comment: Comment: Large DE LogFC range
1 day ago Michael Love 35k
0
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1
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124
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Answer: Answer: Large DE LogFC range
2 days ago Michael Love 35k
0
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0
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162
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Comment: Comment: Weird output of DESeq2 when using single sample from one group agains the other
2 days ago Michael Love 35k
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62
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Answer: Answer: DESeq2 Responder vs Non-Responders nested design
2 days ago Michael Love 35k
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1
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162
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Comment: Comment: Weird output of DESeq2 when using single sample from one group agains the other
2 days ago Michael Love 35k
0
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1
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162
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Answer: Answer: Weird output of DESeq2 when using single sample from one group agains the other
3 days ago Michael Love 35k
0
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50
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Answer: Answer: DESeq2 differences in Wald and LRT in multi-factorial design
3 days ago Michael Love 35k
0
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0
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277
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Comment: Comment: Trying to follow a gene set analyisis in R
5 days ago Michael Love 35k
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104
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Comment: Comment: plyranges select() when a metadata column is shared with core variable
5 days ago Michael Love 35k
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126
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Comment: Comment: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data
5 days ago Michael Love 35k
0
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123
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Comment: Comment: DE analysis model matrix for paired samples
5 days ago Michael Love 35k
0
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1
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277
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Comment: Comment: Trying to follow a gene set analyisis in R
5 days ago Michael Love 35k
0
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1
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277
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Comment: Comment: Trying to follow a gene set analyisis in R
6 days ago Michael Love 35k
0
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1
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277
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Comment: Comment: Trying to follow a gene set analyisis in R
6 days ago Michael Love 35k
0
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1
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123
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Answer: Answer: DE analysis model matrix for paired samples
6 days ago Michael Love 35k
2
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1
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126
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Answer: Answer: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data
6 days ago Michael Love 35k
0
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1
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277
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Comment: Comment: Trying to follow a gene set analyisis in R
6 days ago Michael Love 35k
0
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1
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277
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Answer: Answer: Trying to follow a gene set analyisis in R
7 days ago Michael Love 35k
0
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0
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62
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Answer: Answer: Unusal standard deviation after rlog transformation and the homoscedasticity of
7 days ago Michael Love 35k
0
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0
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476
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Comment: Comment: deseq2 + filtering low counts with noiseq function
7 days ago Michael Love 35k
1
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1
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476
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Comment: Comment: deseq2 + filtering low counts with noiseq function
8 days ago Michael Love 35k
0
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0
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71
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Answer: Answer: Deseq workflow for phyloseq object and complicated data structure?
8 days ago Michael Love 35k
1
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1
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148
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Answer: Answer: Use of shrunken LFCs to address questions about the distribution of LFCs between
12 days ago Michael Love 35k
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0
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126
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Answer: Answer: PlotPCA in DESeq2 doesn't produce exactly the same result as prcomp
12 days ago Michael Love 35k
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1
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141
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Answer: Answer: rlog normalised count for comparing gene expression between samples
12 days ago Michael Love 35k
0
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1
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238
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Comment: Comment: Is it valid to do gene comparisons on VST or rlog transformed data?
12 days ago Michael Love 35k
1
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1
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114
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Answer: Answer: rlog vs vst for outlier identification
12 days ago Michael Love 35k
0
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0
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148
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Comment: Comment: Transformations of the variance in RNA-seq count data DESeq2
12 days ago Michael Love 35k
0
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0
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178
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Comment: Comment: DESeq2 median of ratios normalization for signature score calculation
13 days ago Michael Love 35k
0
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1
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149
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Comment: Comment: DESeq treatment over baseline versus placebo over baseline methodology
13 days ago Michael Love 35k
0
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0
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132
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Comment: Comment: Joint disperstion estimation for DEXSeq and DESeq2
13 days ago Michael Love 35k
0
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0
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178
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Comment: Comment: DESeq2 median of ratios normalization for signature score calculation
13 days ago Michael Love 35k
1
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2
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178
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Answer: Answer: DESeq2 median of ratios normalization for signature score calculation
13 days ago Michael Love 35k
3
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1
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132
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Answer: Answer: Joint disperstion estimation for DEXSeq and DESeq2
13 days ago Michael Love 35k
0
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1
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149
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Answer: Answer: DESeq treatment over baseline versus placebo over baseline methodology
13 days ago Michael Love 35k
1
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1
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148
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Answer: Answer: Transformations of the variance in RNA-seq count data DESeq2
15 days ago Michael Love 35k
1
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1
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145
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Answer: Answer: DESeq2 expressed gene
15 days ago Michael Love 35k
0
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0
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140
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Comment: Comment: Same p-adjusted value for all samples
17 days ago Michael Love 35k
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1
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140
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Answer: Answer: Same p-adjusted value for all samples
17 days ago Michael Love 35k
1
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1
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207
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Comment: Comment: Help with droplevels in Deseq2
17 days ago Michael Love 35k
1
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1
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207
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Comment: Comment: Help with droplevels in Deseq2
17 days ago Michael Love 35k
0
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1
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266
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Comment: Comment: DESeq2 analysis for targeted RNA-seq
17 days ago Michael Love 35k
1
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1
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266
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Answer: Answer: DESeq2 analysis for targeted RNA-seq
19 days ago Michael Love 35k
0
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0
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82
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Answer: Answer: Removal of sample data which belong to a different experiment
21 days ago Michael Love 35k
0
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0
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89
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Comment: Comment: Error in 'differential_abundance'
22 days ago Michael Love 35k
6,970 results • Page 1 of 140
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