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Comment:
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
13 hours ago
Michael Love
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250
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Comment:
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
16 hours ago
Michael Love
39k
2
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37
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Answer:
Answer: Joining different datasets and analyzing using the group-specific condition effe
19 hours ago
Michael Love
39k
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250
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Comment:
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
20 hours ago
Michael Love
39k
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1
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250
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Comment:
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
2 days ago
Michael Love
39k
0
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1
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250
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Comment:
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
2 days ago
Michael Love
39k
0
votes
1
reply
250
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Comment:
Comment: nullranges
2 days ago
Michael Love
39k
0
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1
reply
250
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Answer:
Answer: nullranges
3 days ago
Michael Love
39k
0
votes
0
replies
96
views
Answer:
Answer: collapseReplicates error after tximeta
5 days ago
Michael Love
39k
0
votes
0
replies
92
views
Answer:
Answer: Which genes are outliers in DESeq2?
5 days ago
Michael Love
39k
1
vote
1
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85
views
Answer:
Answer: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
5 days ago
Michael Love
39k
0
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1
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83
views
Answer:
Answer: DESeq2 parameter infernce
8 days ago
Michael Love
39k
0
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0
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68
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Answer:
Answer: DESeq2 with 2 continuous factors, LRT, coeficients and slope
8 days ago
Michael Love
39k
0
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0
replies
78
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Answer:
Answer: DESeq2 with sample effect, unequal sample sizes
8 days ago
Michael Love
39k
0
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0
replies
64
views
Answer:
Answer: RUVr batch correction doubling number of DEGs
10 days ago
Michael Love
39k
0
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0
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103
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Answer:
Answer: What is the difference between these two arguments for log fold change shrinkage
12 days ago
Michael Love
39k
0
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0
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165
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Comment:
Comment: Design for DE analysis in tidybulk
13 days ago
Michael Love
39k
1
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1
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165
views
Comment:
Comment: Design for DE analysis in tidybulk
13 days ago
Michael Love
39k
0
votes
0
replies
188
views
Comment:
Comment: how to iterate all comparisons in group with "coef =" ?
16 days ago
Michael Love
39k
1
vote
0
replies
232
views
Comment:
Comment: DESeq2: Repetitive padj values?
16 days ago
Michael Love
39k
0
votes
0
replies
153
views
Comment:
Comment: Calculated contrasts in DESeq2: difference between manual coefficients and DESeq
16 days ago
Michael Love
39k
0
votes
0
replies
98
views
Answer:
Answer: Libraries loading error
16 days ago
Michael Love
39k
0
votes
0
replies
123
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Answer:
Answer: How to use spike-in information (sequences from another species) with DESeq2::DE
16 days ago
Michael Love
39k
0
votes
0
replies
89
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Answer:
Answer: Extracting interaction contrast when using user supplied model.matrix
18 days ago
Michael Love
39k
0
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0
replies
85
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Answer:
Answer: Rnaseq analysis using a continuous time series
20 days ago
Michael Love
39k
0
votes
0
replies
104
views
Comment:
Comment: Diffbind (or maybe DESeq2) Fold clarification
20 days ago
Michael Love
39k
0
votes
0
replies
105
views
Answer:
Answer: installing DESeq2 on Macbook R Studio
20 days ago
Michael Love
39k
2
votes
2
replies
153
views
Answer:
Answer: Calculated contrasts in DESeq2: difference between manual coefficients and DESeq
20 days ago
Michael Love
39k
0
votes
1
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4.0k
views
Comment:
Comment: DESeq2: Question about the alpha in summary() and results()
22 days ago
Michael Love
39k
0
votes
1
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232
views
Comment:
Comment: DESeq2: Repetitive padj values?
22 days ago
Michael Love
39k
0
votes
1
reply
232
views
Comment:
Comment: DESeq2: Repetitive padj values?
22 days ago
Michael Love
39k
0
votes
1
reply
4.0k
views
Comment:
Comment: DESeq2: Question about the alpha in summary() and results()
23 days ago
Michael Love
39k
3
votes
1
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232
views
Answer:
Answer: DESeq2: Repetitive padj values?
23 days ago
Michael Love
39k
1
vote
0
replies
134
views
Answer:
Answer: Is this DESeq2 interactions design correct?
25 days ago
Michael Love
39k
0
votes
1
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188
views
Answer:
Answer: how to iterate all comparisons in group with "coef =" ?
26 days ago
Michael Love
39k
0
votes
0
replies
2.1k
views
Comment:
Comment: How to perform multiple pairwise comparisons
27 days ago
Michael Love
39k
1
vote
1
reply
153
views
Answer:
Answer: Calculate transcriptional heterogeneity for a condition using DESeq2
27 days ago
Michael Love
39k
0
votes
0
replies
127
views
Answer:
Answer: how to match salmon output to txname
27 days ago
Michael Love
39k
0
votes
0
replies
159
views
Answer:
Answer: Variance stabilization transformation (VST), blind=TRUE
27 days ago
Michael Love
39k
0
votes
0
replies
177
views
Answer:
Answer: Help for RNA sequencing analysis with DESEQ2
27 days ago
Michael Love
39k
1
vote
0
replies
188
views
Answer:
Answer: Bulk RNA seq with deseq2, rnaseqGene, or edgeR
27 days ago
Michael Love
39k
0
votes
0
replies
86
views
Answer:
Answer: Combining VST counts for replicates
27 days ago
Michael Love
39k
0
votes
0
replies
67
views
Answer:
Answer: rlog() transformation works only when using DESeqDataSet, not matrix
28 days ago
Michael Love
39k
0
votes
1
reply
2.1k
views
Comment:
Comment: How to perform multiple pairwise comparisons
29 days ago
Michael Love
39k
1
vote
0
replies
209
views
Answer:
Answer: Some discrepancy between ED genes in cBioPortal vs DESeq2
4 weeks ago
Michael Love
39k
1
vote
1
reply
140
views
Comment:
Comment: Inverted Log2FC values after DEseq2 analysis
4 weeks ago
Michael Love
39k
0
votes
1
reply
140
views
Answer:
Answer: Inverted Log2FC values after DEseq2 analysis
5 weeks ago
Michael Love
39k
0
votes
1
reply
151
views
Answer:
Answer: Differential gene expression analysis with data matrix generated with RSEM
5 weeks ago
Michael Love
39k
0
votes
0
replies
153
views
Comment:
Comment: Tissue Level Differential Expression Analysis
5 weeks ago
Michael Love
39k
0
votes
1
reply
153
views
Answer:
Answer: Tissue Level Differential Expression Analysis
5 weeks ago
Michael Love
39k
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