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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
13 hours ago Michael Love 39k
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250
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
16 hours ago Michael Love 39k
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Answer: Answer: Joining different datasets and analyzing using the group-specific condition effe
19 hours ago Michael Love 39k
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250
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
20 hours ago Michael Love 39k
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250
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
2 days ago Michael Love 39k
0
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1
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250
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
2 days ago Michael Love 39k
0
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1
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250
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Comment: Comment: nullranges
2 days ago Michael Love 39k
0
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250
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Answer: Answer: nullranges
3 days ago Michael Love 39k
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96
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Answer: Answer: collapseReplicates error after tximeta
5 days ago Michael Love 39k
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0
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92
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Answer: Answer: Which genes are outliers in DESeq2?
5 days ago Michael Love 39k
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1
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85
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Answer: Answer: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
5 days ago Michael Love 39k
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1
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83
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Answer: Answer: DESeq2 parameter infernce
8 days ago Michael Love 39k
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68
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Answer: Answer: DESeq2 with 2 continuous factors, LRT, coeficients and slope
8 days ago Michael Love 39k
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78
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Answer: Answer: DESeq2 with sample effect, unequal sample sizes
8 days ago Michael Love 39k
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64
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Answer: Answer: RUVr batch correction doubling number of DEGs
10 days ago Michael Love 39k
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103
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Answer: Answer: What is the difference between these two arguments for log fold change shrinkage
12 days ago Michael Love 39k
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165
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Comment: Comment: Design for DE analysis in tidybulk
13 days ago Michael Love 39k
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1
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165
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Comment: Comment: Design for DE analysis in tidybulk
13 days ago Michael Love 39k
0
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188
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Comment: Comment: how to iterate all comparisons in group with "coef =" ?
16 days ago Michael Love 39k
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0
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232
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Comment: Comment: DESeq2: Repetitive padj values?
16 days ago Michael Love 39k
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153
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Comment: Comment: Calculated contrasts in DESeq2: difference between manual coefficients and DESeq
16 days ago Michael Love 39k
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0
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98
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Answer: Answer: Libraries loading error
16 days ago Michael Love 39k
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0
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123
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Answer: Answer: How to use spike-in information (sequences from another species) with DESeq2::DE
16 days ago Michael Love 39k
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89
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Answer: Answer: Extracting interaction contrast when using user supplied model.matrix
18 days ago Michael Love 39k
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85
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Answer: Answer: Rnaseq analysis using a continuous time series
20 days ago Michael Love 39k
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104
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Comment: Comment: Diffbind (or maybe DESeq2) Fold clarification
20 days ago Michael Love 39k
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105
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Answer: Answer: installing DESeq2 on Macbook R Studio
20 days ago Michael Love 39k
2
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2
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153
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Answer: Answer: Calculated contrasts in DESeq2: difference between manual coefficients and DESeq
20 days ago Michael Love 39k
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1
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4.0k
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Comment: Comment: DESeq2: Question about the alpha in summary() and results()
22 days ago Michael Love 39k
0
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1
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232
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Comment: Comment: DESeq2: Repetitive padj values?
22 days ago Michael Love 39k
0
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1
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232
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Comment: Comment: DESeq2: Repetitive padj values?
22 days ago Michael Love 39k
0
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1
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4.0k
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Comment: Comment: DESeq2: Question about the alpha in summary() and results()
23 days ago Michael Love 39k
3
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1
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232
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Answer: Answer: DESeq2: Repetitive padj values?
23 days ago Michael Love 39k
1
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0
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134
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Answer: Answer: Is this DESeq2 interactions design correct?
25 days ago Michael Love 39k
0
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1
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188
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Answer: Answer: how to iterate all comparisons in group with "coef =" ?
26 days ago Michael Love 39k
0
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0
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2.1k
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Comment: Comment: How to perform multiple pairwise comparisons
27 days ago Michael Love 39k
1
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1
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153
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Answer: Answer: Calculate transcriptional heterogeneity for a condition using DESeq2
27 days ago Michael Love 39k
0
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0
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127
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Answer: Answer: how to match salmon output to txname
27 days ago Michael Love 39k
0
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0
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159
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Answer: Answer: Variance stabilization transformation (VST), blind=TRUE
27 days ago Michael Love 39k
0
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0
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177
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Answer: Answer: Help for RNA sequencing analysis with DESEQ2
27 days ago Michael Love 39k
1
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0
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188
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Answer: Answer: Bulk RNA seq with deseq2, rnaseqGene, or edgeR
27 days ago Michael Love 39k
0
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0
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86
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Answer: Answer: Combining VST counts for replicates
27 days ago Michael Love 39k
0
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0
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67
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Answer: Answer: rlog() transformation works only when using DESeqDataSet, not matrix
28 days ago Michael Love 39k
0
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1
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2.1k
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Comment: Comment: How to perform multiple pairwise comparisons
29 days ago Michael Love 39k
1
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0
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209
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Answer: Answer: Some discrepancy between ED genes in cBioPortal vs DESeq2
4 weeks ago Michael Love 39k
1
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1
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140
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Comment: Comment: Inverted Log2FC values after DEseq2 analysis
4 weeks ago Michael Love 39k
0
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1
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140
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Answer: Answer: Inverted Log2FC values after DEseq2 analysis
5 weeks ago Michael Love 39k
0
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1
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151
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Answer: Answer: Differential gene expression analysis with data matrix generated with RSEM
5 weeks ago Michael Love 39k
0
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0
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153
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Comment: Comment: Tissue Level Differential Expression Analysis
5 weeks ago Michael Love 39k
0
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1
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153
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Answer: Answer: Tissue Level Differential Expression Analysis
5 weeks ago Michael Love 39k
7,479 results • Page 1 of 150
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