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0
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0
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224
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Comment: Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
22 days ago Michael Love 43k
0
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1
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224
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Answer: Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
22 days ago Michael Love 43k
0
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1
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226
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Comment: Comment: Getting a large intercept with DESeq2
6 weeks ago Michael Love 43k
0
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0
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245
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Answer: Answer: Question about collapsing ASVs by genus level during DESeq2 analysis
7 weeks ago Michael Love 43k
1
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0
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62k
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Comment: Comment: deseq2 filter the low counts
8 weeks ago Michael Love 43k
0
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1
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62k
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Comment: Comment: deseq2 filter the low counts
8 weeks ago Michael Love 43k
0
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0
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504
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Comment: Comment: DESeq2 interactions
8 weeks ago Michael Love 43k
2
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1
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623
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Answer: Answer: DESeq2 for candidate gene analysis
9 weeks ago Michael Love 43k
2
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1
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528
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Answer: Answer: DESeq2 design for haplotype MPRA
10 weeks ago Michael Love 43k
0
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0
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383
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Comment: Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
3 months ago Michael Love 43k
0
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1
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383
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Answer: Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
3 months ago Michael Love 43k
0
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0
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726
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Answer: Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi
3 months ago Michael Love 43k
0
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0
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7.3k
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Comment: Comment: DESeq2 on NanoString Data
4 months ago Michael Love 43k
1
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0
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1.2k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
1
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1
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1.2k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
1
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1
reply
1.2k
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
0
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1
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1.2k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
0
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3
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1.2k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
1
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1
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623
views
Comment: Comment: Very different log2 Fold changes with DESeq2 and explict calculation
4 months ago Michael Love 43k
1
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1
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623
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Answer: Answer: Very different log2 Fold changes with DESeq2 and explict calculation
4 months ago Michael Love 43k
0
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1
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1.2k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
0
votes
1
reply
1.2k
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
0
votes
1
reply
308
views
Answer: Answer: DESeq2 inconsistent fits depending on model design with interacting factors
4 months ago Michael Love 43k
0
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2
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1.2k
views
Answer: Answer: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
0
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0
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929
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Comment: Comment: Using shrunken LFC and s-value from DESeq2 as DGE results
4 months ago Michael Love 43k
1
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0
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4.8k
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Comment: Comment: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
5 months ago Michael Love 43k
0
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0
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11k
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Comment: Comment: DESeq2: Continuous and discreate variables in the design
5 months ago Michael Love 43k
0
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1
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929
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Answer: Answer: Using shrunken LFC and s-value from DESeq2 as DGE results
5 months ago Michael Love 43k
0
votes
1
reply
4.8k
views
Comment: Comment: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
6 months ago Michael Love 43k
0
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1
reply
4.8k
views
Answer: Answer: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
6 months ago Michael Love 43k
0
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0
replies
754
views
Answer: Answer: Which GTF file to use for creation of tx2gene files?
6 months ago Michael Love 43k
1
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0
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2.2k
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Answer: Answer: DESeq2 LRT: Testing Effects of Treatment1, Treatment2, and Their Interaction in
6 months ago Michael Love 43k
0
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0
replies
1.2k
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Answer: Answer: 6 groups to compare DESeq2 (Wald vs LRT)
6 months ago Michael Love 43k
2
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0
replies
3.8k
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Answer: Answer: DESeq2 empirical bayes: variance of the prior for log fold changes (LFC)
6 months ago Michael Love 43k
1
vote
1
reply
2.1k
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Answer: Answer: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an
7 months ago Michael Love 43k
0
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0
replies
872
views
Answer: Answer: Workflow to Analyse DNA Sequence specify gene expression in a fungus under stres
7 months ago Michael Love 43k
0
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0
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444
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Answer: Answer: Unclear DEseq2 replaceOutliers error message
7 months ago Michael Love 43k
0
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0
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1.6k
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Comment: Comment: ERCC Spike-In controls being discarded during Tximeta process:
7 months ago Michael Love 43k
0
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0
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2.5k
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Comment: Comment: DeSeq Strategies for run to run Replication
7 months ago Michael Love 43k
1
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0
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4.0k
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Comment: Comment: Cannot extract size factor from DESeq2 analysis
7 months ago Michael Love 43k
0
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0
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610
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Answer: Answer: Difference in DESeq2 output and tidybulk DESeq2 method
7 months ago Michael Love 43k
2
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1
reply
2.1k
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Answer: Answer: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
7 months ago Michael Love 43k
0
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1
reply
1.6k
views
Answer: Answer: ERCC Spike-In controls being discarded during Tximeta process:
7 months ago Michael Love 43k
1
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0
replies
3.2k
views
Answer: Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
7 months ago Michael Love 43k
0
votes
0
replies
1.2k
views
Answer: Answer: How do I set up my DESeq analysis when I know a few vehicle control samples prov
8 months ago Michael Love 43k
0
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0
replies
749
views
Answer: Answer: Differing results with DESeq2
8 months ago Michael Love 43k
0
votes
1
reply
2.5k
views
Comment: Comment: DeSeq Strategies for run to run Replication
8 months ago Michael Love 43k
0
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0
replies
2.0k
views
Comment: Comment: compute_fasta_digest does not match Salmon index hash
8 months ago Michael Love 43k
0
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1
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2.0k
views
Answer: Answer: compute_fasta_digest does not match Salmon index hash
8 months ago Michael Love 43k
1
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1
reply
1.7k
views
Comment: Comment: Using TPM from tximport of Salmon output for singscore
9 months ago Michael Love 43k
8,164 results • Page 1 of 164
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