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Comment: Comment: Error running tximeta
12 hours ago Michael Love 42k
0
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0
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528
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Comment: Comment: DGE with a Continuous Variable
13 hours ago Michael Love 42k
0
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1
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417
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Comment: Comment: Error running tximeta
1 day ago Michael Love 42k
1
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0
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528
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Comment: Comment: DGE with a Continuous Variable
1 day ago Michael Love 42k
0
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1
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528
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Comment: Comment: DGE with a Continuous Variable
1 day ago Michael Love 42k
1
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1
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266
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Comment: Comment: A question occur when using DESeq2 on a complex design
1 day ago Michael Love 42k
2
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1
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266
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Answer: Answer: A question occur when using DESeq2 on a complex design
1 day ago Michael Love 42k
0
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0
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217
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Comment: Comment: Trouble with creating Series RNA-seq normalized counts matrix
3 days ago Michael Love 42k
0
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1
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417
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Answer: Answer: Error running tximeta
4 days ago Michael Love 42k
0
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0
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300
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Comment: Comment: Doubt about model in paired samples (intercept ?)
4 days ago Michael Love 42k
1
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1
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300
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Answer: Answer: Doubt about model in paired samples (intercept ?)
5 days ago Michael Love 42k
0
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2
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730
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Answer: Answer: How to correct for a covariate in DESeq2 that is linear with the condition of in
7 days ago Michael Love 42k
3
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1
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710
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Answer: Answer: DESeq fitNbinomGLMs Warning Issue: In fitNbinomGLMs(objectNZ[fitidx, , drop = FA
8 days ago Michael Love 42k
1
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1
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528
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Comment: Comment: DGE with a Continuous Variable
9 days ago Michael Love 42k
1
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3
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528
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Answer: Answer: DGE with a Continuous Variable
10 days ago Michael Love 42k
0
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0
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385
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Comment: Comment: DESeq2 ML Query
10 days ago Michael Love 42k
1
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0
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376
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Comment: Comment: DESeq normalized counts vs CQN and statistics
11 days ago Michael Love 42k
1
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1
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321
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Answer: Answer: DESeq2: two conditions two genotypes
14 days ago Michael Love 42k
1
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1
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376
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Answer: Answer: DESeq normalized counts vs CQN and statistics
14 days ago Michael Love 42k
0
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0
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212
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Answer: Answer: Problem with spike-ins (ERCC) in DESeq2 analysis after doing RUVg!
15 days ago Michael Love 42k
0
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0
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224
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Answer: Answer: LRT test for different timepoints (one tissue types vs. many tissue types)
23 days ago Michael Love 42k
0
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1
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659
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Comment: Comment: Ranking the GSEA Results
23 days ago Michael Love 42k
0
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1
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659
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Comment: Comment: Ranking the GSEA Results
24 days ago Michael Love 42k
0
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1
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659
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Answer: Answer: Ranking the GSEA Results
27 days ago Michael Love 42k
1
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1
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385
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Comment: Comment: DESeq2 ML Query
29 days ago Michael Love 42k
0
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0
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481
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Comment: Comment: Advice on appropriateness of an offset in glmGamPoi/edgeR
29 days ago Michael Love 42k
0
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0
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4.1k
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Comment: Comment: Deseq2 use fpkm
29 days ago Michael Love 42k
0
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1
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481
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Comment: Comment: Advice on appropriateness of an offset in glmGamPoi/edgeR
29 days ago Michael Love 42k
1
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1
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1.1k
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Answer: Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
4 weeks ago Michael Love 42k
0
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0
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34k
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Comment: Comment: DESeq2 and shrinkage of log2 fold changes
4 weeks ago Michael Love 42k
0
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1
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385
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Answer: Answer: DESeq2 ML Query
5 weeks ago Michael Love 42k
0
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0
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960
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Answer: Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
6 weeks ago Michael Love 42k
0
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0
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323
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Answer: Answer: Design formula, numeric contrast, and lfcshrink in deseq2
6 weeks ago Michael Love 42k
1
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1
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575
views
Comment: Comment: How to run allelic imbalance in apeglm
6 weeks ago Michael Love 42k
2
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1
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220
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Answer: Answer: Double normalising when using sva and deseq2
6 weeks ago Michael Love 42k
0
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1
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575
views
Comment: Comment: How to run allelic imbalance in apeglm
6 weeks ago Michael Love 42k
1
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1
reply
420
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Answer: Answer: Cohen's D calculation for differentially expressed genes via DESeq2 results summ
7 weeks ago Michael Love 42k
0
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2
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575
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Comment: Comment: How to run allelic imbalance in apeglm
7 weeks ago Michael Love 42k
0
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0
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218
views
Answer: Answer: multiple condition issue running DESeq
7 weeks ago Michael Love 42k
0
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1
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412
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Answer: Answer: Create count matrix from multible quant sf files from different directories
7 weeks ago Michael Love 42k
0
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0
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326
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Answer: Answer: Ploting of normalized counts after batch removal
7 weeks ago Michael Love 42k
1
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0
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198
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Answer: Answer: makeExampleDESeqDataSet using pilot data
8 weeks ago Michael Love 42k
0
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0
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458
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Comment: Comment: Counter-directional LFC shrinkage
8 weeks ago Michael Love 42k
0
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1
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458
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Answer: Answer: Counter-directional LFC shrinkage
8 weeks ago Michael Love 42k
0
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1
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554
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Comment: Comment: Volcano plot of scRNA-seq data not "centered"
9 weeks ago Michael Love 42k
0
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1
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423
views
Comment: Comment: Slightly different count plots from R and spreadsheet
9 weeks ago Michael Love 42k
0
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1
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423
views
Comment: Comment: Slightly different count plots from R and spreadsheet
9 weeks ago Michael Love 42k
1
vote
1
reply
423
views
Answer: Answer: Slightly different count plots from R and spreadsheet
9 weeks ago Michael Love 42k
1
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0
replies
406
views
Comment: Comment: DESeq2- Mysterious interaction suppresses DEGs
9 weeks ago Michael Love 42k
1
vote
2
replies
575
views
Answer: Answer: How to run allelic imbalance in apeglm
9 weeks ago Michael Love 42k
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