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0
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252
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Comment: Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
29 days ago Michael Love 43k
0
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1
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252
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Answer: Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
29 days ago Michael Love 43k
0
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1
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239
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Comment: Comment: Getting a large intercept with DESeq2
7 weeks ago Michael Love 43k
0
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0
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249
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Answer: Answer: Question about collapsing ASVs by genus level during DESeq2 analysis
8 weeks ago Michael Love 43k
1
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0
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63k
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Comment: Comment: deseq2 filter the low counts
9 weeks ago Michael Love 43k
0
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1
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63k
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Comment: Comment: deseq2 filter the low counts
9 weeks ago Michael Love 43k
0
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0
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516
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Comment: Comment: DESeq2 interactions
9 weeks ago Michael Love 43k
2
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1
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628
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Answer: Answer: DESeq2 for candidate gene analysis
10 weeks ago Michael Love 43k
2
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1
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537
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Answer: Answer: DESeq2 design for haplotype MPRA
11 weeks ago Michael Love 43k
0
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0
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392
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Comment: Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
3 months ago Michael Love 43k
0
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1
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392
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Answer: Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
3 months ago Michael Love 43k
0
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0
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737
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Answer: Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi
3 months ago Michael Love 43k
0
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0
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7.4k
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Comment: Comment: DESeq2 on NanoString Data
4 months ago Michael Love 43k
1
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0
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1.3k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
1
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1
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1.3k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
1
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1
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1.3k
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
0
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1
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1.3k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
0
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3
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1.3k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
1
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1
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641
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Comment: Comment: Very different log2 Fold changes with DESeq2 and explict calculation
4 months ago Michael Love 43k
1
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1
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641
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Answer: Answer: Very different log2 Fold changes with DESeq2 and explict calculation
4 months ago Michael Love 43k
0
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1
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1.3k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
0
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1
reply
1.3k
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
4 months ago Michael Love 43k
0
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1
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319
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Answer: Answer: DESeq2 inconsistent fits depending on model design with interacting factors
4 months ago Michael Love 43k
0
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2
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1.3k
views
Answer: Answer: DESeq2 used with zinbwave weights - Differences on contrasts calculations
5 months ago Michael Love 43k
0
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0
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958
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Comment: Comment: Using shrunken LFC and s-value from DESeq2 as DGE results
5 months ago Michael Love 43k
1
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0
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4.9k
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Comment: Comment: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
5 months ago Michael Love 43k
0
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0
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11k
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Comment: Comment: DESeq2: Continuous and discreate variables in the design
5 months ago Michael Love 43k
0
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1
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958
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Answer: Answer: Using shrunken LFC and s-value from DESeq2 as DGE results
5 months ago Michael Love 43k
0
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1
reply
4.9k
views
Comment: Comment: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
6 months ago Michael Love 43k
0
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1
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4.9k
views
Answer: Answer: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
6 months ago Michael Love 43k
0
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0
replies
759
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Answer: Answer: Which GTF file to use for creation of tx2gene files?
6 months ago Michael Love 43k
1
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0
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2.2k
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Answer: Answer: DESeq2 LRT: Testing Effects of Treatment1, Treatment2, and Their Interaction in
6 months ago Michael Love 43k
0
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0
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1.2k
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Answer: Answer: 6 groups to compare DESeq2 (Wald vs LRT)
6 months ago Michael Love 43k
2
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0
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3.8k
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Answer: Answer: DESeq2 empirical bayes: variance of the prior for log fold changes (LFC)
7 months ago Michael Love 43k
1
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1
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2.1k
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Answer: Answer: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an
7 months ago Michael Love 43k
0
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0
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882
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Answer: Answer: Workflow to Analyse DNA Sequence specify gene expression in a fungus under stres
7 months ago Michael Love 43k
0
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0
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455
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Answer: Answer: Unclear DEseq2 replaceOutliers error message
7 months ago Michael Love 43k
0
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0
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1.6k
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Comment: Comment: ERCC Spike-In controls being discarded during Tximeta process:
7 months ago Michael Love 43k
0
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0
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2.5k
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Comment: Comment: DeSeq Strategies for run to run Replication
7 months ago Michael Love 43k
1
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0
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4.0k
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Comment: Comment: Cannot extract size factor from DESeq2 analysis
7 months ago Michael Love 43k
0
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0
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613
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Answer: Answer: Difference in DESeq2 output and tidybulk DESeq2 method
7 months ago Michael Love 43k
2
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1
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2.1k
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Answer: Answer: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
7 months ago Michael Love 43k
0
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1
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1.6k
views
Answer: Answer: ERCC Spike-In controls being discarded during Tximeta process:
7 months ago Michael Love 43k
1
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0
replies
3.2k
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Answer: Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
8 months ago • updated 7 months ago Michael Love 43k
0
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0
replies
1.2k
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Answer: Answer: How do I set up my DESeq analysis when I know a few vehicle control samples prov
8 months ago Michael Love 43k
0
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0
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760
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Answer: Answer: Differing results with DESeq2
8 months ago Michael Love 43k
0
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1
reply
2.5k
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Comment: Comment: DeSeq Strategies for run to run Replication
8 months ago Michael Love 43k
0
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0
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2.0k
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Comment: Comment: compute_fasta_digest does not match Salmon index hash
8 months ago Michael Love 43k
0
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1
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2.0k
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Answer: Answer: compute_fasta_digest does not match Salmon index hash
9 months ago Michael Love 43k
1
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1
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1.8k
views
Comment: Comment: Using TPM from tximport of Salmon output for singscore
9 months ago Michael Love 43k
8,164 results • Page 1 of 164
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