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Comment: Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
1 day ago Michael Love 43k
0
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0
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537
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Comment: Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
3 days ago Michael Love 43k
0
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0
replies
537
views
Comment: Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
3 days ago Michael Love 43k
0
votes
1
reply
537
views
Answer: Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2
3 days ago Michael Love 43k
0
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1
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565
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Comment: Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
5 days ago Michael Love 43k
0
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1
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565
views
Comment: Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
7 weeks ago Michael Love 43k
0
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1
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565
views
Answer: Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
7 weeks ago Michael Love 43k
0
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1
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291
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Comment: Comment: Getting a large intercept with DESeq2
10 weeks ago Michael Love 43k
0
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0
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261
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Answer: Answer: Question about collapsing ASVs by genus level during DESeq2 analysis
11 weeks ago Michael Love 43k
1
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0
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63k
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Comment: Comment: deseq2 filter the low counts
12 weeks ago Michael Love 43k
0
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1
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63k
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Comment: Comment: deseq2 filter the low counts
12 weeks ago Michael Love 43k
0
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0
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553
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Comment: Comment: DESeq2 interactions
12 weeks ago Michael Love 43k
2
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1
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649
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Answer: Answer: DESeq2 for candidate gene analysis
3 months ago Michael Love 43k
2
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1
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590
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Answer: Answer: DESeq2 design for haplotype MPRA
3 months ago Michael Love 43k
0
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0
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414
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Comment: Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
4 months ago Michael Love 43k
0
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1
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414
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Answer: Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
4 months ago Michael Love 43k
0
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0
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807
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Answer: Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi
4 months ago Michael Love 43k
0
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0
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7.5k
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Comment: Comment: DESeq2 on NanoString Data
5 months ago Michael Love 43k
1
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0
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1.3k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
5 months ago Michael Love 43k
1
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1
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1.3k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
5 months ago Michael Love 43k
1
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1
reply
1.3k
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
5 months ago Michael Love 43k
0
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1
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1.3k
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
5 months ago Michael Love 43k
0
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3
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1.3k
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
5 months ago Michael Love 43k
1
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1
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669
views
Comment: Comment: Very different log2 Fold changes with DESeq2 and explict calculation
5 months ago Michael Love 43k
1
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1
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669
views
Answer: Answer: Very different log2 Fold changes with DESeq2 and explict calculation
5 months ago Michael Love 43k
0
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1
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1.3k
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
5 months ago Michael Love 43k
0
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1
reply
1.3k
views
Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
5 months ago Michael Love 43k
0
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1
reply
345
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Answer: Answer: DESeq2 inconsistent fits depending on model design with interacting factors
5 months ago Michael Love 43k
0
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2
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1.3k
views
Answer: Answer: DESeq2 used with zinbwave weights - Differences on contrasts calculations
5 months ago Michael Love 43k
0
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0
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1.1k
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Comment: Comment: Using shrunken LFC and s-value from DESeq2 as DGE results
5 months ago Michael Love 43k
1
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0
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5.2k
views
Comment: Comment: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
6 months ago Michael Love 43k
0
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0
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11k
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Comment: Comment: DESeq2: Continuous and discreate variables in the design
6 months ago Michael Love 43k
0
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1
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1.1k
views
Answer: Answer: Using shrunken LFC and s-value from DESeq2 as DGE results
6 months ago Michael Love 43k
0
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1
reply
5.2k
views
Comment: Comment: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
7 months ago Michael Love 43k
0
votes
1
reply
5.2k
views
Answer: Answer: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
7 months ago Michael Love 43k
0
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0
replies
774
views
Answer: Answer: Which GTF file to use for creation of tx2gene files?
7 months ago Michael Love 43k
1
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0
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2.3k
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Answer: Answer: DESeq2 LRT: Testing Effects of Treatment1, Treatment2, and Their Interaction in
7 months ago Michael Love 43k
0
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0
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1.3k
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Answer: Answer: 6 groups to compare DESeq2 (Wald vs LRT)
7 months ago Michael Love 43k
2
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0
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3.9k
views
Answer: Answer: DESeq2 empirical bayes: variance of the prior for log fold changes (LFC)
7 months ago Michael Love 43k
1
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1
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2.1k
views
Answer: Answer: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an
7 months ago Michael Love 43k
0
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0
replies
910
views
Answer: Answer: Workflow to Analyse DNA Sequence specify gene expression in a fungus under stres
7 months ago Michael Love 43k
0
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0
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476
views
Answer: Answer: Unclear DEseq2 replaceOutliers error message
7 months ago Michael Love 43k
0
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0
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1.6k
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Comment: Comment: ERCC Spike-In controls being discarded during Tximeta process:
8 months ago Michael Love 43k
0
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0
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2.6k
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Comment: Comment: DeSeq Strategies for run to run Replication
8 months ago Michael Love 43k
1
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0
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4.1k
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Comment: Comment: Cannot extract size factor from DESeq2 analysis
8 months ago Michael Love 43k
0
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0
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641
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Answer: Answer: Difference in DESeq2 output and tidybulk DESeq2 method
8 months ago Michael Love 43k
2
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1
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2.1k
views
Answer: Answer: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
8 months ago Michael Love 43k
0
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1
reply
1.6k
views
Answer: Answer: ERCC Spike-In controls being discarded during Tximeta process:
8 months ago Michael Love 43k
1
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0
replies
3.3k
views
Answer: Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
8 months ago • updated 7 months ago Michael Love 43k
0
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0
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1.3k
views
Answer: Answer: How do I set up my DESeq analysis when I know a few vehicle control samples prov
9 months ago Michael Love 43k
8,169 results • Page 1 of 164
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