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Comment: Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq
4 weeks ago Michael Love 43k
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1
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303
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Comment: Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq
4 weeks ago Michael Love 43k
0
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1
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303
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Answer: Answer: Lowly expressed genes reported as significant when using lfcThreshold in DESeq
4 weeks ago Michael Love 43k
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0
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251
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Answer: Answer: lfc shrinkage estimator in DESeq2
4 weeks ago Michael Love 43k
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1
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924
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Comment: Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
4 weeks ago Michael Love 43k
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924
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Comment: Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
5 weeks ago Michael Love 43k
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0
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924
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Comment: Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
5 weeks ago Michael Love 43k
0
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1
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924
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Answer: Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2
5 weeks ago Michael Love 43k
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1
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740
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Comment: Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
5 weeks ago Michael Love 43k
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1
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740
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Comment: Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
11 weeks ago Michael Love 43k
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1
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740
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Answer: Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
11 weeks ago Michael Love 43k
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1
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378
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Comment: Comment: Getting a large intercept with DESeq2
3 months ago Michael Love 43k
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0
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292
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Answer: Answer: Question about collapsing ASVs by genus level during DESeq2 analysis
3 months ago Michael Love 43k
1
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0
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65k
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Comment: Comment: deseq2 filter the low counts
3 months ago Michael Love 43k
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1
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65k
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Comment: Comment: deseq2 filter the low counts
4 months ago Michael Love 43k
0
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0
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624
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Comment: Comment: DESeq2 interactions
4 months ago Michael Love 43k
2
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1
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690
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Answer: Answer: DESeq2 for candidate gene analysis
4 months ago Michael Love 43k
2
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1
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663
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Answer: Answer: DESeq2 design for haplotype MPRA
4 months ago Michael Love 43k
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0
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474
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Comment: Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
5 months ago Michael Love 43k
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1
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474
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Answer: Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
5 months ago Michael Love 43k
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0
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998
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Answer: Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi
5 months ago Michael Love 43k
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0
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7.6k
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Comment: Comment: DESeq2 on NanoString Data
6 months ago Michael Love 43k
1
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0
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1.6k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
6 months ago Michael Love 43k
1
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1
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1.6k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
6 months ago Michael Love 43k
1
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1
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1.6k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
6 months ago Michael Love 43k
0
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1
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1.6k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
6 months ago Michael Love 43k
0
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3
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1.6k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
6 months ago Michael Love 43k
1
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1
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718
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Comment: Comment: Very different log2 Fold changes with DESeq2 and explict calculation
6 months ago Michael Love 43k
1
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1
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718
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Answer: Answer: Very different log2 Fold changes with DESeq2 and explict calculation
6 months ago Michael Love 43k
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1
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1.6k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
6 months ago Michael Love 43k
0
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1
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1.6k
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Comment: Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
6 months ago Michael Love 43k
0
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1
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396
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Answer: Answer: DESeq2 inconsistent fits depending on model design with interacting factors
6 months ago Michael Love 43k
0
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2
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1.6k
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Answer: Answer: DESeq2 used with zinbwave weights - Differences on contrasts calculations
6 months ago Michael Love 43k
0
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0
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1.2k
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Comment: Comment: Using shrunken LFC and s-value from DESeq2 as DGE results
6 months ago Michael Love 43k
1
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0
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5.7k
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Comment: Comment: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
7 months ago Michael Love 43k
0
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0
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11k
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Comment: Comment: DESeq2: Continuous and discreate variables in the design
7 months ago Michael Love 43k
0
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1
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1.2k
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Answer: Answer: Using shrunken LFC and s-value from DESeq2 as DGE results
7 months ago Michael Love 43k
0
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1
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5.7k
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Comment: Comment: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
8 months ago Michael Love 43k
0
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1
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5.7k
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Answer: Answer: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
8 months ago Michael Love 43k
0
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0
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800
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Answer: Answer: Which GTF file to use for creation of tx2gene files?
8 months ago Michael Love 43k
1
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0
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2.3k
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Answer: Answer: DESeq2 LRT: Testing Effects of Treatment1, Treatment2, and Their Interaction in
8 months ago Michael Love 43k
0
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0
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1.3k
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Answer: Answer: 6 groups to compare DESeq2 (Wald vs LRT)
8 months ago Michael Love 43k
2
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0
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3.9k
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Answer: Answer: DESeq2 empirical bayes: variance of the prior for log fold changes (LFC)
8 months ago Michael Love 43k
1
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1
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2.2k
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Answer: Answer: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an
9 months ago Michael Love 43k
0
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0
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939
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Answer: Answer: Workflow to Analyse DNA Sequence specify gene expression in a fungus under stres
9 months ago Michael Love 43k
0
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0
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512
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Answer: Answer: Unclear DEseq2 replaceOutliers error message
9 months ago Michael Love 43k
0
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0
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1.7k
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Comment: Comment: ERCC Spike-In controls being discarded during Tximeta process:
9 months ago Michael Love 43k
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0
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2.6k
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Comment: Comment: DeSeq Strategies for run to run Replication
9 months ago Michael Love 43k
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0
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4.1k
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Comment: Comment: Cannot extract size factor from DESeq2 analysis
9 months ago Michael Love 43k
0
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0
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691
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Answer: Answer: Difference in DESeq2 output and tidybulk DESeq2 method
9 months ago Michael Love 43k
8,173 results • Page 1 of 164
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