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Comment:
Comment: Question about using LRT test for time course experiments with DESeq2
1 day ago
Michael Love
42k
0
votes
1
reply
448
views
Answer:
Answer: Question about using LRT test for time course experiments with DESeq2
2 days ago
Michael Love
42k
0
votes
0
replies
260
views
Answer:
Answer: Deseq to output continous sequencing data
3 days ago
Michael Love
42k
0
votes
0
replies
445
views
Answer:
Answer: Adjusted p-values become NA when sub-setting samples
3 days ago
Michael Love
42k
0
votes
0
replies
445
views
Comment:
Comment: Adjusted p-values become NA when sub-setting samples
3 days ago
Michael Love
42k
3
votes
2
replies
614
views
Answer:
Answer: Robust way of dealing with low number of samples for Differential Gene Expressio
3 days ago
Michael Love
42k
0
votes
1
reply
6.3k
views
Comment:
Comment: DESeq2 with unbalanced experimental design
5 days ago
Michael Love
42k
0
votes
0
replies
688
views
Comment:
Comment: [DESeq2] Introduce a bias in DESeq2
5 days ago
Michael Love
42k
0
votes
1
reply
688
views
Comment:
Comment: [DESeq2] Introduce a bias in DESeq2
7 days ago
Michael Love
42k
0
votes
1
reply
688
views
Comment:
Comment: [DESeq2] Introduce a bias in DESeq2
7 days ago
Michael Love
42k
0
votes
0
replies
126
views
Answer:
Answer: ESTMATE, MCPcounter, EPIC, xCell input
7 days ago
Michael Love
42k
0
votes
0
replies
202
views
Answer:
Answer: Should zero counts in some replicates lead to inflated p-values?
9 days ago
Michael Love
42k
0
votes
0
replies
1.3k
views
Comment:
Comment: DESeq2 unable to handle large count values
11 days ago
Michael Love
42k
0
votes
0
replies
911
views
Comment:
Comment: Analysis of large RNA-Seq Datasets
12 days ago
Michael Love
42k
0
votes
0
replies
662
views
Comment:
Comment: DESeq2 - interactions when using factors concatenated into group
13 days ago
Michael Love
42k
1
vote
2
replies
662
views
Answer:
Answer: DESeq2 - interactions when using factors concatenated into group
13 days ago
Michael Love
42k
0
votes
0
replies
147
views
Answer:
Answer: 2 factor analysis using DESeq2 but the result is not what I expected from the de
14 days ago
Michael Love
42k
1
vote
1
reply
617
views
Comment:
Comment: New to Deseq2 - DEG questions / MA plot
14 days ago
Michael Love
42k
0
votes
0
replies
227
views
Answer:
Answer: How does deseq2 address intra group variance when calculating log2foldchange
15 days ago
Michael Love
42k
0
votes
0
replies
135
views
Comment:
Comment: Using Normalized Counts in DESeq2
16 days ago
Michael Love
42k
0
votes
1
reply
410
views
Answer:
Answer: Mostly increased counts in differentially accessible peaks using DESeq2
22 days ago
Michael Love
42k
0
votes
0
replies
138
views
Answer:
Answer: How to set filtering standard for low-expression genes in ImpulseDE2
22 days ago
Michael Love
42k
0
votes
1
reply
323
views
Comment:
Comment: RNASeq Time Course Question
23 days ago
Michael Love
42k
1
vote
1
reply
323
views
Answer:
Answer: RNASeq Time Course Question
23 days ago
Michael Love
42k
0
votes
0
replies
593
views
Comment:
Comment: Highly DE genes but small count difference within conditions
23 days ago
Michael Love
42k
0
votes
1
reply
688
views
Answer:
Answer: [DESeq2] Introduce a bias in DESeq2
23 days ago
Michael Love
42k
0
votes
1
reply
1.1k
views
Comment:
Comment: DEseq2 time-series design
23 days ago
Michael Love
42k
0
votes
1
reply
593
views
Comment:
Comment: Highly DE genes but small count difference within conditions
24 days ago
Michael Love
42k
0
votes
1
reply
593
views
Comment:
Comment: Highly DE genes but small count difference within conditions
24 days ago
Michael Love
42k
0
votes
1
reply
593
views
Comment:
Comment: Highly DE genes but small count difference within conditions
24 days ago
Michael Love
42k
1
vote
1
reply
593
views
Answer:
Answer: Highly DE genes but small count difference within conditions
24 days ago
Michael Love
42k
0
votes
1
reply
231
views
Answer:
Answer: RNA-Seq p value range variation
26 days ago
Michael Love
42k
0
votes
0
replies
308
views
Comment:
Comment: How can I obtain DEGs that are resulted from using salmon in alignment-based mod
29 days ago
Michael Love
42k
0
votes
0
replies
398
views
Answer:
Answer: Poor dispersion fit in DESeq2
4 weeks ago
Michael Love
42k
0
votes
0
replies
657
views
Answer:
Answer: DESeq2 analysis on 2 plant lines infected with virus, with 2 time points (days p
4 weeks ago
Michael Love
42k
0
votes
0
replies
439
views
Answer:
Answer: DESeq2 design and contrasts with 2 drug-treated and one control group
4 weeks ago
Michael Love
42k
0
votes
0
replies
6.1k
views
Comment:
Comment: DESeq2 with proteomics data
5 weeks ago
Michael Love
42k
0
votes
0
replies
258
views
Answer:
Answer: Many DEGs (Is a high percentage of DEGs acceptable in DESeq2)?
5 weeks ago
Michael Love
42k
0
votes
0
replies
244
views
Answer:
Answer: Dealing with 0 miRNA counts in DESeq2 analysis and influence in adjusted p-value
6 weeks ago
Michael Love
42k
1
vote
0
replies
15k
views
Comment:
Comment: [DESeq2] time series strain-specific differences over time
7 weeks ago
Michael Love
42k
1
vote
1
reply
15k
views
Comment:
Comment: [DESeq2] time series strain-specific differences over time
7 weeks ago
Michael Love
42k
1
vote
1
reply
15k
views
Comment:
Comment: [DESeq2] time series strain-specific differences over time
7 weeks ago
Michael Love
42k
0
votes
0
replies
1.4k
views
Comment:
Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
7 weeks ago
Michael Love
42k
2
votes
1
reply
1.4k
views
Answer:
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
7 weeks ago
Michael Love
42k
0
votes
0
replies
1.4k
views
Comment:
Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
7 weeks ago
Michael Love
42k
0
votes
0
replies
371
views
Answer:
Answer: tximport data import
8 weeks ago
Michael Love
42k
1
vote
1
reply
727
views
Comment:
Comment: Size factor normalized counts for between sample comparisons - correct?
8 weeks ago
Michael Love
42k
0
votes
1
reply
811
views
Comment:
Comment: Recommendations for DESeq2 Independent Filtering with Pseudobulk Data
9 weeks ago
Michael Love
42k
0
votes
1
reply
727
views
Comment:
Comment: Size factor normalized counts for between sample comparisons - correct?
9 weeks ago
Michael Love
42k
1
vote
1
reply
727
views
Answer:
Answer: Size factor normalized counts for between sample comparisons - correct?
9 weeks ago
Michael Love
42k
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