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Comment: Comment: Questions about the false positives indicated by DESeq2 and QQ plot
2.3 years ago Michael Love 43k
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1.5k
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Comment: Comment: DESeq2 : standardising variation between treatments
2.3 years ago Michael Love 43k
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1.5k
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Answer: Answer: DESeq2 : standardising variation between treatments
2.3 years ago Michael Love 43k
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902
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Answer: Answer: Issues with ddseq2 for treatment response factoring in different KO clones
2.3 years ago Michael Love 43k
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2.5k
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Comment: Comment: deseq2 pre filter rna seq
2.3 years ago Michael Love 43k
3
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3
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3.8k
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Comment: Comment: tximport error: vroom
2.3 years ago Michael Love 43k
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2
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3.8k
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Answer: Answer: tximport error: vroom
2.3 years ago Michael Love 43k
1
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0
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1.7k
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Comment: Comment: Mixed up sample info with plotPCA
2.3 years ago Michael Love 43k
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1
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1.7k
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Comment: Comment: Mixed up sample info with plotPCA
2.3 years ago Michael Love 43k
0
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1
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1.7k
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Answer: Answer: Mixed up sample info with plotPCA
2.3 years ago Michael Love 43k
1
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1
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1.7k
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Comment: Comment: Deseq2 calculated log2foldchange not consistent with RPM in IP-small RNA-seq
2.3 years ago Michael Love 43k
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1.7k
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Answer: Answer: Deseq2 calculated log2foldchange not consistent with RPM in IP-small RNA-seq
2.3 years ago Michael Love 43k
0
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1.5k
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Comment: Comment: collapseReplicates error after tximeta
2.3 years ago Michael Love 43k
0
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0
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4.9k
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Comment: Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
2.3 years ago Michael Love 43k
0
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1
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4.9k
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Comment: Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
2.3 years ago Michael Love 43k
0
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1
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4.9k
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Comment: Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
2.3 years ago Michael Love 43k
1
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1
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4.9k
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Comment: Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
2.3 years ago Michael Love 43k
0
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0
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969
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Answer: Answer: Remove duplicates of colData in TreeSummarizedExperiment
2.3 years ago Michael Love 43k
2
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0
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3.8k
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Comment: Comment: Differential expression analysis with only FPKM matrix available from total newb
2.4 years ago Michael Love 43k
0
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1
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946
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Answer: Answer: how to adjust other conditions when calling DEGs by DESeq2
2.4 years ago Michael Love 43k
1
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0
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1.9k
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Comment: Comment: Permutation test in DESeq2?
2.4 years ago Michael Love 43k
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1.9k
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Comment: Comment: Permutation test in DESeq2?
2.4 years ago Michael Love 43k
0
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1
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1.9k
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Comment: Comment: Permutation test in DESeq2?
2.4 years ago Michael Love 43k
0
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1
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1.9k
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Answer: Answer: Permutation test in DESeq2?
2.4 years ago Michael Love 43k
1
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1
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783
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Answer: Answer: Setting up a multi-factor experiement
2.4 years ago Michael Love 43k
0
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0
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883
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Answer: Answer: DESeq design and contrast with multiple factors
2.4 years ago Michael Love 43k
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1.0k
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Answer: Answer: Dramatically different DESeq2 results in Mac and Linux computers
2.4 years ago Michael Love 43k
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0
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1.9k
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Comment: Comment: RNAseq : identical sample-sample distances after using limma::removeBatchEffect
2.4 years ago Michael Love 43k
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0
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2.1k
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Answer: Answer: Handle zero effective gene length when tximport RSEM results
2.4 years ago Michael Love 43k
2
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1
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4.9k
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Answer: Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
2.4 years ago Michael Love 43k
1
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0
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1.7k
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Answer: Answer: Import Salmon data with tximport and pool technical replicates
2.4 years ago Michael Love 43k
0
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1
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1.8k
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Comment: Comment: DESeq2: How to estimate effects of one factor controlling for other factors?
2.4 years ago Michael Love 43k
0
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2
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1.8k
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Answer: Answer: DESeq2: How to estimate effects of one factor controlling for other factors?
2.4 years ago Michael Love 43k
0
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0
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2.1k
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Answer: Answer: Error: insufficient numeric precision during Log fold change shrinkage with apeg
2.4 years ago Michael Love 43k
0
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0
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1.0k
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Answer: Answer: Comparing the effect of single drug and two-drug combination with control in RNA
2.5 years ago Michael Love 43k
0
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0
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1.5k
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Answer: Answer: DESeq2 batch design
2.5 years ago Michael Love 43k
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0
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1.0k
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Answer: Answer: DESeq2 interaction design
2.5 years ago Michael Love 43k
1
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1.4k
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Comment: Comment: DESeq2 "Not full rank" and "Less than full rank" Errors with design ~ time + in
2.5 years ago Michael Love 43k
1
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1
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1.4k
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Answer: Answer: DESeq2 "Not full rank" and "Less than full rank" Errors with design ~ time + in
2.5 years ago Michael Love 43k
0
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0
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1.5k
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Answer: Answer: DESeq2 & RUVseq model matrix is less than full rank
2.5 years ago Michael Love 43k
0
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0
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4.2k
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Comment: Comment: RNA seq differential expression analysis for large sample size
2.5 years ago Michael Love 43k
1
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1
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4.2k
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Answer: Answer: RNA seq differential expression analysis for large sample size
2.5 years ago Michael Love 43k
0
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0
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751
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Answer: Answer: Using DEseq2 for two conditions with different dispersions
2.5 years ago Michael Love 43k
0
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1
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1.5k
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Comment: Comment: Deseq2 Results are different using batch design
2.5 years ago Michael Love 43k
0
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1
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1.5k
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Comment: Comment: Deseq2 Results are different using batch design
2.5 years ago Michael Love 43k
1
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0
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6.8k
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Comment: Comment: How to properly average normalized counts of biological replicates
2.5 years ago Michael Love 43k
0
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0
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938
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Answer: Answer: I changed the reference in DGE contrasts by DESeq2, but the results changed just
2.5 years ago Michael Love 43k
0
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1
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1.5k
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Answer: Answer: Deseq2 Results are different using batch design
2.5 years ago Michael Love 43k
0
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0
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3.2k
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Comment: Comment: News:Ensembl 110 has been released
2.5 years ago Michael Love 43k
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0
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1.5k
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Comment: Comment: lfc direction of effect flipped for ashr, apeGLM, but accurate to biological dat
2.5 years ago Michael Love 43k
8,173 results • Page 10 of 164
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