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Answer: Answer: Tximport - Is transcript level expression sum equal to summarisetogene() results
2.5 years ago Michael Love 43k
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Comment: Comment: Proper way to implement DESeq2 when comparing samples with trisomies?
2.5 years ago Michael Love 43k
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4.2k
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Comment: Comment: DESeq2, time-course interpretation
2.5 years ago Michael Love 43k
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4.1k
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Comment: Comment: tximport error: all(txId == raw[[txIdCol]]) is not TRUE
2.5 years ago Michael Love 43k
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1.5k
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Answer: Answer: lfc direction of effect flipped for ashr, apeGLM, but accurate to biological dat
2.5 years ago Michael Love 43k
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2.3k
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Answer: Answer: R could not could not find function "makeTxDbFromGFF" after loading (GenomicFeat
2.5 years ago Michael Love 43k
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1.6k
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Comment: Comment: DESeq2 not replicable results
2.6 years ago Michael Love 43k
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1.6k
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Comment: Comment: DESeq2 not replicable results
2.6 years ago Michael Love 43k
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1.6k
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Comment: Comment: DESeq2 not replicable results
2.6 years ago Michael Love 43k
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1.6k
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Comment: Comment: DESeq2 not replicable results
2.6 years ago Michael Love 43k
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1.6k
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Answer: Answer: DESeq2 not replicable results
2.6 years ago Michael Love 43k
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958
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Comment: Comment: p-value<0.05 for a gene with zero counts?
2.6 years ago Michael Love 43k
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583
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Answer: Answer: Complex DESeq2 Experimental Design
2.6 years ago Michael Love 43k
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1
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4.2k
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Comment: Comment: DESeq2, time-course interpretation
2.6 years ago Michael Love 43k
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1
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958
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Answer: Answer: p-value<0.05 for a gene with zero counts?
2.6 years ago Michael Love 43k
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1.6k
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Answer: Answer: Generating Random Genomic Ranges
2.6 years ago Michael Love 43k
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1.4k
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Answer: Answer: DESeq2 time course using fitted splines
2.6 years ago • updated 19 months ago Michael Love 43k
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1
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3.4k
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Comment: Comment: Whether to build DESeq2 model with all data and then contrast groups or subset g
2.6 years ago Michael Love 43k
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1
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4.2k
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Answer: Answer: DESeq2, time-course interpretation
2.6 years ago Michael Love 43k
4
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2
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1.8k
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Answer: Answer: Proper way to implement DESeq2 when comparing samples with trisomies?
2.6 years ago Michael Love 43k
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0
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996
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Answer: Answer: Controlling for covariates and identifying DEGs using DESeq2
2.6 years ago Michael Love 43k
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3.4k
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Comment: Comment: Whether to build DESeq2 model with all data and then contrast groups or subset g
2.6 years ago Michael Love 43k
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1
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3.4k
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Answer: Answer: Whether to build DESeq2 model with all data and then contrast groups or subset g
2.6 years ago Michael Love 43k
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0
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2.8k
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Comment: Comment: ranking the DeSeq2 results using t-values?
2.6 years ago Michael Love 43k
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1.5k
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Answer: Answer: DESeq2 with nbinomGLM issues
2.6 years ago Michael Love 43k
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1.5k
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Comment: Comment: Creating the right number/distribution of sequences in bootranges
2.6 years ago Michael Love 43k
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0
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1.5k
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Comment: Comment: Creating the right number/distribution of sequences in bootranges
2.6 years ago Michael Love 43k
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1
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1.5k
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Comment: Comment: Creating the right number/distribution of sequences in bootranges
2.6 years ago Michael Love 43k
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1
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1.6k
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Comment: Comment: DESEq2 Error: rows did not converge
2.6 years ago Michael Love 43k
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1
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1.7k
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Comment: Comment: Fishpond/Swish Interaction Test Error
2.6 years ago Michael Love 43k
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0
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891
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Answer: Answer: Design formula for genotype-specific condition effects using ~group in the desig
2.6 years ago Michael Love 43k
1
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1
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1.7k
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Comment: Comment: Fishpond/Swish Interaction Test Error
2.6 years ago Michael Love 43k
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0
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1.3k
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Comment: Comment: Fishpond with unbalanced dataset
2.6 years ago Michael Love 43k
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2
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1.7k
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Comment: Comment: Fishpond/Swish Interaction Test Error
2.6 years ago Michael Love 43k
0
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1
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1.5k
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Answer: Answer: Creating the right number/distribution of sequences in bootranges
2.6 years ago Michael Love 43k
0
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1
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1.6k
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Answer: Answer: DESEq2 Error: rows did not converge
2.6 years ago Michael Love 43k
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1
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1.3k
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Answer: Answer: Fishpond with unbalanced dataset
2.6 years ago Michael Love 43k
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0
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1.1k
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Answer: Answer: Can DESeq2 handle low number of samples and replicates?
2.6 years ago Michael Love 43k
1
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1
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1.3k
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Answer: Answer: DESeq: relaxing gene filtering thresholds increases mean-Sd correlation, but rec
2.6 years ago Michael Love 43k
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1
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5.1k
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Comment: Comment: What causes this DESeq2 error at "fitting model and testing"?
2.6 years ago Michael Love 43k
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1
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5.1k
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Comment: Comment: What causes this DESeq2 error at "fitting model and testing"?
2.6 years ago Michael Love 43k
0
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0
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64k
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Comment: Comment: deseq2 filter the low counts
2.6 years ago Michael Love 43k
0
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1
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1.3k
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Comment: Comment: Using different filtering steps in different iterations of DEseq2
2.6 years ago Michael Love 43k
1
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1
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2.0k
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Comment: Comment: Failure of beta estimates to converge in DESeq2 despite noncollinearity and reas
2.6 years ago Michael Love 43k
2
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2
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64k
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Comment: Comment: deseq2 filter the low counts
2.6 years ago Michael Love 43k
0
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0
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862
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Answer: Answer: Comparing DGE between datasets with uneven sample sizes using DESeq2
2.6 years ago Michael Love 43k
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0
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744
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Answer: Answer: Deseq contrast question
2.6 years ago Michael Love 43k
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1
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1.3k
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Answer: Answer: Using different filtering steps in different iterations of DEseq2
2.6 years ago Michael Love 43k
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1
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2.0k
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Answer: Answer: Failure of beta estimates to converge in DESeq2 despite noncollinearity and reas
2.6 years ago Michael Love 43k
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1
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1.2k
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Answer: Answer: Can DESeq2 handle huge variations in sequencing depth among samples?
2.6 years ago Michael Love 43k
8,173 results • Page 11 of 164
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