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Comment: Comment: DESeq2 model - How to test case/control time course model when taking account wi
9 months ago Michael Love 43k
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2.4k
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Comment: Comment: deseq2 lfc shrinkage with few DEGs
9 months ago Michael Love 43k
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18k
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Comment: Comment: DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
9 months ago Michael Love 43k
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0
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1.3k
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Comment: Comment: Guidance Needed: Best Practices for Handling Technical Replicates in RNA-seq Ana
9 months ago Michael Love 43k
2
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1.8k
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Answer: Answer: Using TPM from tximport of Salmon output for singscore
9 months ago Michael Love 43k
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0
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795
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Comment: Comment: Removing UTR from GTF for gene quantification
9 months ago Michael Love 43k
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1.6k
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Answer: Answer: Surprising behavior for DEXseq dispersion estimate plot?
10 months ago Michael Love 43k
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475
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Answer: Answer: DESeq use in lipidomic analysis
10 months ago Michael Love 43k
0
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0
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1.1k
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Comment: Comment: Differential variance analysis - can i use deseq2
10 months ago Michael Love 43k
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1
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1.1k
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Answer: Answer: Differential variance analysis - can i use deseq2
10 months ago Michael Love 43k
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1
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729
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Comment: Comment: Web accessibility of Bioconductor.org
10 months ago Michael Love 43k
2
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643
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Comment: Comment: plyranges: find exact GRanges match keeping metadata columns
10 months ago Michael Love 43k
0
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0
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437
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Answer: Answer: Comparing Mock vs Infected in WT and Knockout Cells
10 months ago Michael Love 43k
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0
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1.3k
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Answer: Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals
11 months ago Michael Love 43k
1
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0
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2.0k
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Answer: Answer: Reducing and aggregating GRanges with gaps using plyranges
11 months ago Michael Love 43k
2
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1
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643
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Answer: Answer: Find exact GRanges match keeping metadata columns
11 months ago Michael Love 43k
0
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0
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690
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Answer: Answer: DEG analysis across multiple timepoints, treatments and tissues
11 months ago Michael Love 43k
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0
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765
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Comment: Comment: Is there a way to do DEG analysis across two batches sharing one sample only?
11 months ago Michael Love 43k
0
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2
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765
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Answer: Answer: Is there a way to do DEG analysis across two batches sharing one sample only?
11 months ago Michael Love 43k
0
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0
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528
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Answer: Answer: Curiously shaped volcano plot with using oarfish + swish to do differential gene
11 months ago Michael Love 43k
0
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0
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1.5k
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Comment: Comment: Problems with oarfish + tximport + swish
11 months ago Michael Love 43k
0
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1
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1.5k
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Comment: Comment: Problems with oarfish + tximport + swish
11 months ago Michael Love 43k
0
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0
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1.5k
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Comment: Comment: Problems with oarfish + tximport + swish
11 months ago Michael Love 43k
0
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0
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1.5k
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Comment: Comment: Problems with oarfish + tximport + swish
11 months ago Michael Love 43k
0
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0
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1.8k
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Comment: Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D
11 months ago Michael Love 43k
0
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1
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1.5k
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Comment: Comment: Problems with oarfish + tximport + swish
11 months ago Michael Love 43k
0
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1
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1.5k
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Answer: Answer: Problems with oarfish + tximport + swish
11 months ago Michael Love 43k
0
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0
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880
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Comment: Comment: Differential variability modelling with vst() expression
11 months ago Michael Love 43k
1
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1
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880
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Answer: Answer: Differential variability modelling with vst() expression
11 months ago Michael Love 43k
1
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2
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1.8k
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Comment: Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D
11 months ago Michael Love 43k
0
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0
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1.9k
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Comment: Comment: DESEQ2 Default Value for Cooks Distance cutoff
12 months ago Michael Love 43k
1
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0
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1.0k
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Answer: Answer: Considerations behind the choice of RNAseq Differential Expression Analysis Tool
12 months ago Michael Love 43k
0
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0
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631
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Answer: Answer: Please, I desperately need help with DESeq2. Three groups of repeated measures w
12 months ago Michael Love 43k
2
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0
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755
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Answer: Answer: Is it possible to work with DESeq2 where data is not properly matched for sex a
12 months ago Michael Love 43k
1
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0
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575
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Answer: Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
12 months ago Michael Love 43k
2
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0
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1.1k
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Answer: Answer: Standardization of rlog transformed counts before PCA
12 months ago Michael Love 43k
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0
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1.2k
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Comment: Comment: p value is 0, padj is 0
12 months ago Michael Love 43k
1
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1
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1.2k
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Answer: Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
12 months ago Michael Love 43k
0
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0
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570
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Answer: Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square
13 months ago Michael Love 43k
0
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1
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961
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Answer: Answer: lfcShrink and alpha value
13 months ago Michael Love 43k
2
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0
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767
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Answer: Answer: DESeq2- merging technical vs biological replicates
13 months ago Michael Love 43k
0
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1
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961
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Answer: Answer: lfcShrink and alpha value
13 months ago Michael Love 43k
0
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0
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525
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Answer: Answer: DESeq2 dispersion estimates fitting drastically different based on explanatory v
13 months ago Michael Love 43k
1
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1
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824
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Answer: Answer: Deseq2 res Function
13 months ago Michael Love 43k
0
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0
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787
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Comment: Comment: Identical samples after deseq2 batch effect removal
13 months ago Michael Love 43k
0
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2
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787
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Comment: Comment: Identical samples after deseq2 batch effect removal
13 months ago Michael Love 43k
0
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1
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787
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Answer: Answer: Identical samples after deseq2 batch effect removal
13 months ago Michael Love 43k
1
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0
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2.8k
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Comment: Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
13 months ago Michael Love 43k
0
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0
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549
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Answer: Answer: Is my time course analysis with DESeq2 valid?
13 months ago Michael Love 43k
0
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0
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6.0k
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Comment: Comment: Tximport with RSEM error
13 months ago Michael Love 43k
8,164 results • Page 2 of 164
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