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Comment: Comment: Differential variance analysis - can i use deseq2
7 months ago Michael Love 43k
0
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890
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Answer: Answer: Differential variance analysis - can i use deseq2
7 months ago Michael Love 43k
0
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1
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640
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Comment: Comment: Web accessibility of Bioconductor.org
8 months ago Michael Love 43k
2
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0
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572
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Comment: Comment: plyranges: find exact GRanges match keeping metadata columns
8 months ago Michael Love 43k
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364
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Answer: Answer: Comparing Mock vs Infected in WT and Knockout Cells
8 months ago Michael Love 43k
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1.2k
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Answer: Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals
8 months ago Michael Love 43k
1
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0
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1.9k
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Answer: Answer: Reducing and aggregating GRanges with gaps using plyranges
8 months ago Michael Love 43k
2
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1
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572
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Answer: Answer: Find exact GRanges match keeping metadata columns
8 months ago Michael Love 43k
0
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484
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Answer: Answer: DEG analysis across multiple timepoints, treatments and tissues
8 months ago Michael Love 43k
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660
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Comment: Comment: Is there a way to do DEG analysis across two batches sharing one sample only?
8 months ago Michael Love 43k
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2
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660
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Answer: Answer: Is there a way to do DEG analysis across two batches sharing one sample only?
8 months ago Michael Love 43k
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0
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465
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Answer: Answer: Curiously shaped volcano plot with using oarfish + swish to do differential gene
8 months ago Michael Love 43k
0
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0
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1.3k
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Comment: Comment: Problems with oarfish + tximport + swish
9 months ago Michael Love 43k
0
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1
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1.3k
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Comment: Comment: Problems with oarfish + tximport + swish
9 months ago Michael Love 43k
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0
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1.3k
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Comment: Comment: Problems with oarfish + tximport + swish
9 months ago Michael Love 43k
0
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0
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1.3k
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Comment: Comment: Problems with oarfish + tximport + swish
9 months ago Michael Love 43k
0
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0
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1.6k
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Comment: Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D
9 months ago Michael Love 43k
0
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1
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1.3k
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Comment: Comment: Problems with oarfish + tximport + swish
9 months ago Michael Love 43k
0
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1
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1.3k
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Answer: Answer: Problems with oarfish + tximport + swish
9 months ago Michael Love 43k
0
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0
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747
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Comment: Comment: Differential variability modelling with vst() expression
9 months ago Michael Love 43k
1
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1
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747
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Answer: Answer: Differential variability modelling with vst() expression
9 months ago Michael Love 43k
1
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2
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1.6k
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Comment: Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D
9 months ago Michael Love 43k
0
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0
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1.8k
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Comment: Comment: DESEQ2 Default Value for Cooks Distance cutoff
9 months ago Michael Love 43k
1
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0
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836
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Answer: Answer: Considerations behind the choice of RNAseq Differential Expression Analysis Tool
9 months ago Michael Love 43k
0
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0
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568
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Answer: Answer: Please, I desperately need help with DESeq2. Three groups of repeated measures w
9 months ago Michael Love 43k
2
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0
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599
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Answer: Answer: Is it possible to work with DESeq2 where data is not properly matched for sex a
9 months ago Michael Love 43k
1
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0
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540
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Answer: Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
9 months ago Michael Love 43k
2
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0
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943
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Answer: Answer: Standardization of rlog transformed counts before PCA
10 months ago Michael Love 43k
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0
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1.1k
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Comment: Comment: p value is 0, padj is 0
10 months ago Michael Love 43k
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1
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1.1k
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Answer: Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
10 months ago Michael Love 43k
0
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0
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516
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Answer: Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square
10 months ago Michael Love 43k
0
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1
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870
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Answer: Answer: lfcShrink and alpha value
10 months ago Michael Love 43k
2
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0
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668
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Answer: Answer: DESeq2- merging technical vs biological replicates
10 months ago Michael Love 43k
0
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1
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870
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Answer: Answer: lfcShrink and alpha value
10 months ago Michael Love 43k
0
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0
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465
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Answer: Answer: DESeq2 dispersion estimates fitting drastically different based on explanatory v
10 months ago Michael Love 43k
1
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1
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775
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Answer: Answer: Deseq2 res Function
10 months ago Michael Love 43k
0
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0
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741
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Comment: Comment: Identical samples after deseq2 batch effect removal
10 months ago Michael Love 43k
0
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2
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741
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Comment: Comment: Identical samples after deseq2 batch effect removal
10 months ago Michael Love 43k
0
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1
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741
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Answer: Answer: Identical samples after deseq2 batch effect removal
10 months ago Michael Love 43k
1
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0
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2.7k
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Comment: Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
11 months ago Michael Love 43k
0
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0
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498
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Answer: Answer: Is my time course analysis with DESeq2 valid?
11 months ago Michael Love 43k
0
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0
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5.9k
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Comment: Comment: Tximport with RSEM error
11 months ago Michael Love 43k
0
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0
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1.5k
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Comment: Comment: Volcano plot has many values around zero
11 months ago Michael Love 43k
0
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0
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564
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Answer: Answer: DESeq2 interaction between cancer cells and microenvironment cells
11 months ago Michael Love 43k
1
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0
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1.3k
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Comment: Comment: DESeq Input from Salmon + tximport/tximeta
11 months ago Michael Love 43k
1
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1
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1.3k
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Answer: Answer: DESeq Input from Salmon + tximport/tximeta
11 months ago Michael Love 43k
0
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1
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2.3k
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Comment: Comment: Question about using LRT test for time course experiments with DESeq2
11 months ago Michael Love 43k
0
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1
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2.3k
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Answer: Answer: Question about using LRT test for time course experiments with DESeq2
11 months ago Michael Love 43k
0
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0
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546
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Answer: Answer: Deseq to output continous sequencing data
11 months ago Michael Love 43k
1
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1
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1.3k
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Answer: Answer: Adjusted p-values become NA when sub-setting samples
11 months ago Michael Love 43k
8,156 results • Page 2 of 164
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