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Comment: Comment: Volcano plot has many values around zero
14 months ago Michael Love 43k
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585
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Answer: Answer: DESeq2 interaction between cancer cells and microenvironment cells
14 months ago Michael Love 43k
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1.4k
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Comment: Comment: DESeq Input from Salmon + tximport/tximeta
14 months ago Michael Love 43k
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Answer: Answer: DESeq Input from Salmon + tximport/tximeta
14 months ago Michael Love 43k
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Comment: Comment: Question about using LRT test for time course experiments with DESeq2
14 months ago Michael Love 43k
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Answer: Answer: Question about using LRT test for time course experiments with DESeq2
14 months ago Michael Love 43k
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Answer: Answer: Deseq to output continous sequencing data
14 months ago Michael Love 43k
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Answer: Answer: Adjusted p-values become NA when sub-setting samples
14 months ago Michael Love 43k
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Comment: Comment: Adjusted p-values become NA when sub-setting samples
14 months ago Michael Love 43k
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Answer: Answer: Robust way of dealing with low number of samples for Differential Gene Expressio
14 months ago Michael Love 43k
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7.1k
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Comment: Comment: DESeq2 with unbalanced experimental design
14 months ago Michael Love 43k
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Comment: Comment: [DESeq2] Introduce a bias in DESeq2
14 months ago Michael Love 43k
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1.4k
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Comment: Comment: [DESeq2] Introduce a bias in DESeq2
14 months ago Michael Love 43k
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Comment: Comment: [DESeq2] Introduce a bias in DESeq2
14 months ago Michael Love 43k
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863
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Answer: Answer: ESTMATE, MCPcounter, EPIC, xCell input
14 months ago Michael Love 43k
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505
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Answer: Answer: Should zero counts in some replicates lead to inflated p-values?
14 months ago Michael Love 43k
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Comment: Comment: DESeq2 unable to handle large count values
14 months ago Michael Love 43k
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Comment: Comment: Analysis of large RNA-Seq Datasets
14 months ago Michael Love 43k
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Comment: Comment: DESeq2 - interactions when using factors concatenated into group
14 months ago Michael Love 43k
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Answer: Answer: DESeq2 - interactions when using factors concatenated into group
14 months ago Michael Love 43k
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397
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Answer: Answer: 2 factor analysis using DESeq2 but the result is not what I expected from the de
14 months ago Michael Love 43k
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1.9k
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Comment: Comment: New to Deseq2 - DEG questions / MA plot
14 months ago Michael Love 43k
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491
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Answer: Answer: How does deseq2 address intra group variance when calculating log2foldchange
14 months ago Michael Love 43k
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556
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Comment: Comment: Using Normalized Counts in DESeq2
14 months ago Michael Love 43k
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1.3k
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Answer: Answer: Mostly increased counts in differentially accessible peaks using DESeq2
15 months ago Michael Love 43k
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553
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Answer: Answer: How to set filtering standard for low-expression genes in ImpulseDE2
15 months ago Michael Love 43k
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966
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Comment: Comment: RNASeq Time Course Question
15 months ago Michael Love 43k
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966
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Answer: Answer: RNASeq Time Course Question
15 months ago Michael Love 43k
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2.2k
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Comment: Comment: Highly DE genes but small count difference within conditions
15 months ago Michael Love 43k
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1.4k
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Answer: Answer: [DESeq2] Introduce a bias in DESeq2
15 months ago Michael Love 43k
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1.7k
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Comment: Comment: DEseq2 time-series design
15 months ago Michael Love 43k
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2.2k
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Comment: Comment: Highly DE genes but small count difference within conditions
15 months ago Michael Love 43k
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2.2k
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Comment: Comment: Highly DE genes but small count difference within conditions
15 months ago Michael Love 43k
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1
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2.2k
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Comment: Comment: Highly DE genes but small count difference within conditions
15 months ago Michael Love 43k
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1
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2.2k
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Answer: Answer: Highly DE genes but small count difference within conditions
15 months ago Michael Love 43k
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732
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Answer: Answer: RNA-Seq p value range variation
15 months ago Michael Love 43k
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782
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Comment: Comment: How can I obtain DEGs that are resulted from using salmon in alignment-based mod
15 months ago Michael Love 43k
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930
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Answer: Answer: Poor dispersion fit in DESeq2
15 months ago Michael Love 43k
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1.0k
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Answer: Answer: DESeq2 analysis on 2 plant lines infected with virus, with 2 time points (days p
15 months ago Michael Love 43k
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1.1k
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Answer: Answer: DESeq2 design and contrasts with 2 drug-treated and one control group
15 months ago Michael Love 43k
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8.1k
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Comment: Comment: DESeq2 with proteomics data
15 months ago Michael Love 43k
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0
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483
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Answer: Answer: Many DEGs (Is a high percentage of DEGs acceptable in DESeq2)?
15 months ago Michael Love 43k
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626
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Answer: Answer: Dealing with 0 miRNA counts in DESeq2 analysis and influence in adjusted p-value
15 months ago Michael Love 43k
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17k
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Comment: Comment: [DESeq2] time series strain-specific differences over time
15 months ago Michael Love 43k
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17k
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Comment: Comment: [DESeq2] time series strain-specific differences over time
16 months ago Michael Love 43k
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17k
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Comment: Comment: [DESeq2] time series strain-specific differences over time
16 months ago Michael Love 43k
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2.0k
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Comment: Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
16 months ago Michael Love 43k
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2.0k
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Answer: Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
16 months ago Michael Love 43k
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2.0k
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Comment: Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
16 months ago Michael Love 43k
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0
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779
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Answer: Answer: tximport data import
16 months ago Michael Love 43k
8,164 results • Page 3 of 164
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