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Answer: Answer: lfcShrink and alpha value
14 months ago Michael Love 43k
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556
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Answer: Answer: DESeq2 dispersion estimates fitting drastically different based on explanatory v
14 months ago Michael Love 43k
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882
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Answer: Answer: Deseq2 res Function
15 months ago Michael Love 43k
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874
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Comment: Comment: Identical samples after deseq2 batch effect removal
15 months ago Michael Love 43k
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874
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Comment: Comment: Identical samples after deseq2 batch effect removal
15 months ago Michael Love 43k
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874
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Answer: Answer: Identical samples after deseq2 batch effect removal
15 months ago Michael Love 43k
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2.8k
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Comment: Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
15 months ago Michael Love 43k
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592
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Answer: Answer: Is my time course analysis with DESeq2 valid?
15 months ago Michael Love 43k
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6.1k
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Comment: Comment: Tximport with RSEM error
15 months ago Michael Love 43k
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1.8k
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Comment: Comment: Volcano plot has many values around zero
15 months ago Michael Love 43k
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618
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Answer: Answer: DESeq2 interaction between cancer cells and microenvironment cells
15 months ago Michael Love 43k
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1.6k
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Comment: Comment: DESeq Input from Salmon + tximport/tximeta
15 months ago Michael Love 43k
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1.6k
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Answer: Answer: DESeq Input from Salmon + tximport/tximeta
15 months ago Michael Love 43k
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2.8k
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Comment: Comment: Question about using LRT test for time course experiments with DESeq2
16 months ago Michael Love 43k
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2.8k
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Answer: Answer: Question about using LRT test for time course experiments with DESeq2
16 months ago Michael Love 43k
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598
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Answer: Answer: Deseq to output continous sequencing data
16 months ago Michael Love 43k
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1.5k
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Answer: Answer: Adjusted p-values become NA when sub-setting samples
16 months ago Michael Love 43k
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Comment: Comment: Adjusted p-values become NA when sub-setting samples
16 months ago Michael Love 43k
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1.8k
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Answer: Answer: Robust way of dealing with low number of samples for Differential Gene Expressio
16 months ago Michael Love 43k
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7.2k
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Comment: Comment: DESeq2 with unbalanced experimental design
16 months ago Michael Love 43k
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1.5k
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Comment: Comment: [DESeq2] Introduce a bias in DESeq2
16 months ago Michael Love 43k
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1.5k
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Comment: Comment: [DESeq2] Introduce a bias in DESeq2
16 months ago Michael Love 43k
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1.5k
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Comment: Comment: [DESeq2] Introduce a bias in DESeq2
16 months ago Michael Love 43k
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1.1k
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Answer: Answer: ESTMATE, MCPcounter, EPIC, xCell input
16 months ago Michael Love 43k
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526
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Answer: Answer: Should zero counts in some replicates lead to inflated p-values?
16 months ago Michael Love 43k
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2.3k
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Comment: Comment: DESeq2 unable to handle large count values
16 months ago Michael Love 43k
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1.4k
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Comment: Comment: Analysis of large RNA-Seq Datasets
16 months ago Michael Love 43k
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1.2k
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Comment: Comment: DESeq2 - interactions when using factors concatenated into group
16 months ago Michael Love 43k
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1.2k
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Answer: Answer: DESeq2 - interactions when using factors concatenated into group
16 months ago Michael Love 43k
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421
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Answer: Answer: 2 factor analysis using DESeq2 but the result is not what I expected from the de
16 months ago Michael Love 43k
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2.3k
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Comment: Comment: New to Deseq2 - DEG questions / MA plot
16 months ago Michael Love 43k
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515
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Answer: Answer: How does deseq2 address intra group variance when calculating log2foldchange
16 months ago Michael Love 43k
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578
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Comment: Comment: Using Normalized Counts in DESeq2
16 months ago Michael Love 43k
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1.6k
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Answer: Answer: Mostly increased counts in differentially accessible peaks using DESeq2
16 months ago Michael Love 43k
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0
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604
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Answer: Answer: How to set filtering standard for low-expression genes in ImpulseDE2
16 months ago Michael Love 43k
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1.1k
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Comment: Comment: RNASeq Time Course Question
16 months ago Michael Love 43k
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1.1k
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Answer: Answer: RNASeq Time Course Question
16 months ago Michael Love 43k
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2.4k
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Comment: Comment: Highly DE genes but small count difference within conditions
16 months ago Michael Love 43k
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1.5k
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Answer: Answer: [DESeq2] Introduce a bias in DESeq2
16 months ago Michael Love 43k
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1.7k
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Comment: Comment: DEseq2 time-series design
16 months ago Michael Love 43k
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2.4k
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Comment: Comment: Highly DE genes but small count difference within conditions
16 months ago Michael Love 43k
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1
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2.4k
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Comment: Comment: Highly DE genes but small count difference within conditions
16 months ago Michael Love 43k
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1
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2.4k
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Comment: Comment: Highly DE genes but small count difference within conditions
16 months ago Michael Love 43k
1
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1
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2.4k
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Answer: Answer: Highly DE genes but small count difference within conditions
16 months ago Michael Love 43k
0
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1
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772
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Answer: Answer: RNA-Seq p value range variation
16 months ago Michael Love 43k
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0
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840
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Comment: Comment: How can I obtain DEGs that are resulted from using salmon in alignment-based mod
16 months ago Michael Love 43k
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0
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1000
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Answer: Answer: Poor dispersion fit in DESeq2
17 months ago Michael Love 43k
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0
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1.1k
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Answer: Answer: DESeq2 analysis on 2 plant lines infected with virus, with 2 time points (days p
17 months ago Michael Love 43k
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1.1k
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Answer: Answer: DESeq2 design and contrasts with 2 drug-treated and one control group
17 months ago Michael Love 43k
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0
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8.4k
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Comment: Comment: DESeq2 with proteomics data
17 months ago Michael Love 43k
8,173 results • Page 3 of 164
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