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Comment: Comment: Size factor normalized counts for between sample comparisons - correct?
16 months ago Michael Love 43k
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1.6k
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Comment: Comment: Recommendations for DESeq2 Independent Filtering with Pseudobulk Data
16 months ago Michael Love 43k
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1.7k
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Comment: Comment: Size factor normalized counts for between sample comparisons - correct?
16 months ago Michael Love 43k
1
vote
1
reply
1.7k
views
Answer: Answer: Size factor normalized counts for between sample comparisons - correct?
16 months ago Michael Love 43k
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1
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1.1k
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Comment: Comment: DESeq design with and without intercept is giving different results
16 months ago Michael Love 43k
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1.9k
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Comment: Comment: stat value is throwed out after lfcShrink in DESeq2
16 months ago Michael Love 43k
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1.1k
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Comment: Comment: DESeq design with and without intercept is giving different results
16 months ago Michael Love 43k
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839
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Answer: Answer: Inquiry on Using DESeq2 for Analyzing Differential Translation Efficiency
16 months ago Michael Love 43k
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1.1k
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Answer: Answer: DESeq design with and without intercept is giving different results
16 months ago Michael Love 43k
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1.6k
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Comment: Comment: RNASeq normlization for samples with global shift in gene expression
16 months ago Michael Love 43k
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1.6k
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Answer: Answer: RNASeq normlization for samples with global shift in gene expression
16 months ago Michael Love 43k
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707
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Answer: Answer: Analysis of transcription inhibition with DESeq2
16 months ago Michael Love 43k
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8.8k
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Comment: Comment: Understanding interaction term in DESeq2
17 months ago Michael Love 43k
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5.0k
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Comment: Comment: DESeq2: handling NA values in colData
17 months ago Michael Love 43k
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1.6k
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Answer: Answer: Recommendations for DESeq2 Independent Filtering with Pseudobulk Data
17 months ago Michael Love 43k
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0
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646
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Answer: Answer: Using DESeq2 for Analyzing AMR Gene Variations in Water Samples Post-Treatment
17 months ago Michael Love 43k
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821
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Answer: Answer: Combining DESeq2 and Within-Group Variability to Identify Stochastic Genes
17 months ago Michael Love 43k
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1
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1.4k
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Answer: Answer: How to use specific size factors and average transcript lengths from tximport i
17 months ago Michael Love 43k
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2.4k
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Answer: Answer: What does evidence of batch effect in bulk rnaseq look like?
17 months ago Michael Love 43k
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0
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897
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Answer: Answer: DESeq2 - Outliers influencing sig DEGs, filter counts per group samples, not by
17 months ago Michael Love 43k
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1.0k
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Answer: Answer: DESeq2 Likelihood ratio test + contrast option + Volcano plot
17 months ago Michael Love 43k
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1
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1.9k
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Comment: Comment: Error running tximeta
17 months ago Michael Love 43k
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0
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2.0k
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Comment: Comment: DGE with a Continuous Variable
17 months ago Michael Love 43k
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1
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1.9k
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Comment: Comment: Error running tximeta
17 months ago Michael Love 43k
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2.0k
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Comment: Comment: DGE with a Continuous Variable
17 months ago Michael Love 43k
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1
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2.0k
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Comment: Comment: DGE with a Continuous Variable
17 months ago Michael Love 43k
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2
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1.4k
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Comment: Comment: A question occur when using DESeq2 on a complex design
17 months ago Michael Love 43k
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1.4k
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Answer: Answer: A question occur when using DESeq2 on a complex design
17 months ago Michael Love 43k
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0
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983
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Comment: Comment: Trouble with creating Series RNA-seq normalized counts matrix
17 months ago Michael Love 43k
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1
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1.9k
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Answer: Answer: Error running tximeta
17 months ago Michael Love 43k
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0
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966
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Comment: Comment: Doubt about model in paired samples (intercept ?)
17 months ago Michael Love 43k
1
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1
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966
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Answer: Answer: Doubt about model in paired samples (intercept ?)
17 months ago Michael Love 43k
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2
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2.1k
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Answer: Answer: How to correct for a covariate in DESeq2 that is linear with the condition of in
17 months ago Michael Love 43k
3
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2
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1.6k
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Answer: Answer: DESeq fitNbinomGLMs Warning Issue: In fitNbinomGLMs(objectNZ[fitidx, , drop = FA
17 months ago Michael Love 43k
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1
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2.0k
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Comment: Comment: DGE with a Continuous Variable
17 months ago Michael Love 43k
1
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3
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2.0k
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Answer: Answer: DGE with a Continuous Variable
18 months ago Michael Love 43k
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0
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1.2k
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Comment: Comment: DESeq2 ML Query
18 months ago Michael Love 43k
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0
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1.3k
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Comment: Comment: DESeq normalized counts vs CQN and statistics
18 months ago Michael Love 43k
1
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1
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788
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Answer: Answer: DESeq2: two conditions two genotypes
18 months ago Michael Love 43k
1
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2
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1.3k
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Answer: Answer: DESeq normalized counts vs CQN and statistics
18 months ago Michael Love 43k
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0
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1.1k
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Answer: Answer: Problem with spike-ins (ERCC) in DESeq2 analysis after doing RUVg!
18 months ago Michael Love 43k
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0
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577
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Answer: Answer: LRT test for different timepoints (one tissue types vs. many tissue types)
18 months ago Michael Love 43k
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1
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2.6k
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Comment: Comment: Ranking the GSEA Results
18 months ago Michael Love 43k
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1
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2.6k
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Comment: Comment: Ranking the GSEA Results
18 months ago Michael Love 43k
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1
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2.6k
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Answer: Answer: Ranking the GSEA Results
18 months ago Michael Love 43k
1
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1
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1.2k
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Comment: Comment: DESeq2 ML Query
18 months ago Michael Love 43k
0
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0
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2.0k
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Comment: Comment: Advice on appropriateness of an offset in glmGamPoi/edgeR
18 months ago Michael Love 43k
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0
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5.3k
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Comment: Comment: Deseq2 use fpkm
18 months ago Michael Love 43k
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1
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2.0k
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Comment: Comment: Advice on appropriateness of an offset in glmGamPoi/edgeR
18 months ago Michael Love 43k
1
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1
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3.4k
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Answer: Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
18 months ago Michael Love 43k
8,164 results • Page 4 of 164
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