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Answer: Answer: Many DEGs (Is a high percentage of DEGs acceptable in DESeq2)?
17 months ago Michael Love 43k
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Answer: Answer: Dealing with 0 miRNA counts in DESeq2 analysis and influence in adjusted p-value
17 months ago Michael Love 43k
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Comment: Comment: [DESeq2] time series strain-specific differences over time
17 months ago Michael Love 43k
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17k
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Comment: Comment: [DESeq2] time series strain-specific differences over time
17 months ago Michael Love 43k
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17k
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Comment: Comment: [DESeq2] time series strain-specific differences over time
17 months ago Michael Love 43k
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Comment: Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
17 months ago Michael Love 43k
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Answer: Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
17 months ago Michael Love 43k
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2.1k
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Comment: Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
17 months ago Michael Love 43k
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841
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Answer: Answer: tximport data import
17 months ago Michael Love 43k
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2.0k
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Comment: Comment: Size factor normalized counts for between sample comparisons - correct?
18 months ago Michael Love 43k
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1.7k
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Comment: Comment: Recommendations for DESeq2 Independent Filtering with Pseudobulk Data
18 months ago Michael Love 43k
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2.0k
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Comment: Comment: Size factor normalized counts for between sample comparisons - correct?
18 months ago Michael Love 43k
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2.0k
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Answer: Answer: Size factor normalized counts for between sample comparisons - correct?
18 months ago Michael Love 43k
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1.2k
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Comment: Comment: DESeq design with and without intercept is giving different results
18 months ago Michael Love 43k
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2.0k
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Comment: Comment: stat value is throwed out after lfcShrink in DESeq2
18 months ago Michael Love 43k
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1.2k
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Comment: Comment: DESeq design with and without intercept is giving different results
18 months ago Michael Love 43k
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934
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Answer: Answer: Inquiry on Using DESeq2 for Analyzing Differential Translation Efficiency
18 months ago Michael Love 43k
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1.2k
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Answer: Answer: DESeq design with and without intercept is giving different results
18 months ago Michael Love 43k
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1.8k
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Comment: Comment: RNASeq normlization for samples with global shift in gene expression
18 months ago Michael Love 43k
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1.8k
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Answer: Answer: RNASeq normlization for samples with global shift in gene expression
18 months ago Michael Love 43k
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763
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Answer: Answer: Analysis of transcription inhibition with DESeq2
18 months ago Michael Love 43k
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9.3k
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Comment: Comment: Understanding interaction term in DESeq2
18 months ago Michael Love 43k
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5.1k
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Comment: Comment: DESeq2: handling NA values in colData
18 months ago Michael Love 43k
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1.7k
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Answer: Answer: Recommendations for DESeq2 Independent Filtering with Pseudobulk Data
18 months ago Michael Love 43k
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668
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Answer: Answer: Using DESeq2 for Analyzing AMR Gene Variations in Water Samples Post-Treatment
18 months ago Michael Love 43k
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850
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Answer: Answer: Combining DESeq2 and Within-Group Variability to Identify Stochastic Genes
18 months ago Michael Love 43k
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1.4k
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Answer: Answer: How to use specific size factors and average transcript lengths from tximport i
19 months ago Michael Love 43k
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2.8k
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Answer: Answer: What does evidence of batch effect in bulk rnaseq look like?
19 months ago Michael Love 43k
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968
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Answer: Answer: DESeq2 - Outliers influencing sig DEGs, filter counts per group samples, not by
19 months ago Michael Love 43k
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1.1k
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Answer: Answer: DESeq2 Likelihood ratio test + contrast option + Volcano plot
19 months ago Michael Love 43k
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2.0k
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Comment: Comment: Error running tximeta
19 months ago Michael Love 43k
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2.0k
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Comment: Comment: DGE with a Continuous Variable
19 months ago Michael Love 43k
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2.0k
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Comment: Comment: Error running tximeta
19 months ago Michael Love 43k
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2.0k
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Comment: Comment: DGE with a Continuous Variable
19 months ago Michael Love 43k
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2.0k
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Comment: Comment: DGE with a Continuous Variable
19 months ago Michael Love 43k
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1.5k
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Comment: Comment: A question occur when using DESeq2 on a complex design
19 months ago Michael Love 43k
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1.5k
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Answer: Answer: A question occur when using DESeq2 on a complex design
19 months ago Michael Love 43k
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1.0k
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Comment: Comment: Trouble with creating Series RNA-seq normalized counts matrix
19 months ago Michael Love 43k
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2.0k
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Answer: Answer: Error running tximeta
19 months ago Michael Love 43k
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1.0k
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Comment: Comment: Doubt about model in paired samples (intercept ?)
19 months ago Michael Love 43k
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1.0k
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Answer: Answer: Doubt about model in paired samples (intercept ?)
19 months ago Michael Love 43k
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2.2k
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Answer: Answer: How to correct for a covariate in DESeq2 that is linear with the condition of in
19 months ago Michael Love 43k
3
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2
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1.7k
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Answer: Answer: DESeq fitNbinomGLMs Warning Issue: In fitNbinomGLMs(objectNZ[fitidx, , drop = FA
19 months ago Michael Love 43k
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2.0k
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Comment: Comment: DGE with a Continuous Variable
19 months ago Michael Love 43k
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3
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2.0k
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Answer: Answer: DGE with a Continuous Variable
19 months ago Michael Love 43k
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1.2k
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Comment: Comment: DESeq2 ML Query
19 months ago Michael Love 43k
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1.4k
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Comment: Comment: DESeq normalized counts vs CQN and statistics
19 months ago Michael Love 43k
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840
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Answer: Answer: DESeq2: two conditions two genotypes
19 months ago Michael Love 43k
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1.4k
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Answer: Answer: DESeq normalized counts vs CQN and statistics
19 months ago Michael Love 43k
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1.1k
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Answer: Answer: Problem with spike-ins (ERCC) in DESeq2 analysis after doing RUVg!
19 months ago Michael Love 43k
8,173 results • Page 4 of 164
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