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Comment: Comment: DESeq2 and shrinkage of log2 fold changes
18 months ago Michael Love 43k
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1.2k
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Answer: Answer: DESeq2 ML Query
18 months ago Michael Love 43k
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1.4k
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Answer: Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
19 months ago Michael Love 43k
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0
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699
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Answer: Answer: Design formula, numeric contrast, and lfcshrink in deseq2
19 months ago Michael Love 43k
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1
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1.7k
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Comment: Comment: How to run allelic imbalance in apeglm
19 months ago Michael Love 43k
2
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1
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979
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Answer: Answer: Double normalising when using sva and deseq2
19 months ago Michael Love 43k
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1.7k
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Comment: Comment: How to run allelic imbalance in apeglm
19 months ago Michael Love 43k
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1
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1.3k
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Answer: Answer: Cohen's D calculation for differentially expressed genes via DESeq2 results summ
19 months ago Michael Love 43k
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2
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1.7k
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Comment: Comment: How to run allelic imbalance in apeglm
19 months ago Michael Love 43k
0
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0
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540
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Answer: Answer: multiple condition issue running DESeq
19 months ago Michael Love 43k
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1
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1.0k
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Answer: Answer: Create count matrix from multible quant sf files from different directories
19 months ago Michael Love 43k
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0
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778
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Answer: Answer: Ploting of normalized counts after batch removal
19 months ago Michael Love 43k
1
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514
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Answer: Answer: makeExampleDESeqDataSet using pilot data
19 months ago Michael Love 43k
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1.2k
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Comment: Comment: Counter-directional LFC shrinkage
19 months ago Michael Love 43k
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1.2k
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Answer: Answer: Counter-directional LFC shrinkage
19 months ago Michael Love 43k
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1
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2.3k
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Comment: Comment: Volcano plot of scRNA-seq data not "centered"
19 months ago Michael Love 43k
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1
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1.4k
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Comment: Comment: Slightly different count plots from R and spreadsheet
19 months ago Michael Love 43k
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1
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1.4k
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Comment: Comment: Slightly different count plots from R and spreadsheet
19 months ago Michael Love 43k
1
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1
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1.4k
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Answer: Answer: Slightly different count plots from R and spreadsheet
19 months ago Michael Love 43k
1
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0
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1.1k
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Comment: Comment: DESeq2- Mysterious interaction suppresses DEGs
19 months ago Michael Love 43k
1
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2
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1.7k
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Answer: Answer: How to run allelic imbalance in apeglm
19 months ago Michael Love 43k
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1
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1.6k
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Comment: Comment: Numerical differences in DESeq2 output depending on different design matrix cons
19 months ago Michael Love 43k
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1
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1.6k
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Answer: Answer: Numerical differences in DESeq2 output depending on different design matrix cons
20 months ago Michael Love 43k
1
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1
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1.1k
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Answer: Answer: DESeq2- Mysterious interaction suppresses DEGs
20 months ago Michael Love 43k
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0
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820
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Comment: Comment: Assymetric MA plot with no overall trend
20 months ago Michael Love 43k
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1
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1.4k
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Answer: Answer: Can DESeq2 rlog normalized matrix reflects time course result directly?
20 months ago Michael Love 43k
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0
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2.4k
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Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
20 months ago Michael Love 43k
0
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1
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820
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Answer: Answer: Assymetric MA plot with no overall trend
20 months ago Michael Love 43k
0
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1
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2.4k
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Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
20 months ago Michael Love 43k
1
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1
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1.2k
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Comment: Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
20 months ago Michael Love 43k
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0
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807
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Answer: Answer: normalization across different species for DESeq2 analysis
20 months ago Michael Love 43k
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0
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6.4k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
20 months ago Michael Love 43k
0
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1
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2.4k
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Answer: Answer: Can I trust the differential expression analysis when the two groups overlap on
20 months ago Michael Love 43k
0
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1
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6.4k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
20 months ago Michael Love 43k
0
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1
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6.4k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
20 months ago Michael Love 43k
0
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1
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6.4k
views
Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
20 months ago Michael Love 43k
0
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0
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6.4k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
20 months ago Michael Love 43k
0
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1
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6.4k
views
Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
20 months ago Michael Love 43k
0
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1
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6.4k
views
Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
20 months ago Michael Love 43k
0
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1
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6.4k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
20 months ago Michael Love 43k
3
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0
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905
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Answer: Answer: How to save the DEXSeq results
20 months ago Michael Love 43k
2
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0
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654
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Answer: Answer: Trim/Filter out-of-bounds GRanges
20 months ago Michael Love 43k
0
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0
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873
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Comment: Comment: Couldn't connect to server while using "pathways"
20 months ago Michael Love 43k
0
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1
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6.4k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
20 months ago Michael Love 43k
0
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1
reply
6.4k
views
Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
20 months ago Michael Love 43k
1
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1
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864
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Answer: Answer: Handling multiple differential expression comparisons
20 months ago Michael Love 43k
1
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0
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2.5k
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Comment: Comment: Too many significant genes when integrating gtex and tcga
20 months ago Michael Love 43k
0
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0
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532
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Answer: Answer: DESeq2 v1.35.0
20 months ago Michael Love 43k
0
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0
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741
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Comment: Comment: log2FoldChange value is way too different when compared with counts(dds)
20 months ago Michael Love 43k
0
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1
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741
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Answer: Answer: log2FoldChange value is way too different when compared with counts(dds)
20 months ago Michael Love 43k
8,164 results • Page 5 of 164
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