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Answer: Answer: LRT test for different timepoints (one tissue types vs. many tissue types)
20 months ago Michael Love 43k
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Comment: Comment: Ranking the GSEA Results
20 months ago Michael Love 43k
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Comment: Comment: Ranking the GSEA Results
20 months ago Michael Love 43k
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3.0k
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Answer: Answer: Ranking the GSEA Results
20 months ago Michael Love 43k
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1.2k
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Comment: Comment: DESeq2 ML Query
20 months ago Michael Love 43k
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Comment: Comment: Advice on appropriateness of an offset in glmGamPoi/edgeR
20 months ago Michael Love 43k
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Comment: Comment: Deseq2 use fpkm
20 months ago Michael Love 43k
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Comment: Comment: Advice on appropriateness of an offset in glmGamPoi/edgeR
20 months ago Michael Love 43k
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Answer: Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
20 months ago Michael Love 43k
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Comment: Comment: DESeq2 and shrinkage of log2 fold changes
20 months ago Michael Love 43k
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Answer: Answer: DESeq2 ML Query
20 months ago Michael Love 43k
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Answer: Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
20 months ago Michael Love 43k
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724
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Answer: Answer: Design formula, numeric contrast, and lfcshrink in deseq2
20 months ago Michael Love 43k
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1.8k
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Comment: Comment: How to run allelic imbalance in apeglm
20 months ago Michael Love 43k
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1.1k
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Answer: Answer: Double normalising when using sva and deseq2
20 months ago Michael Love 43k
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1.8k
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Comment: Comment: How to run allelic imbalance in apeglm
20 months ago Michael Love 43k
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1.5k
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Answer: Answer: Cohen's D calculation for differentially expressed genes via DESeq2 results summ
20 months ago Michael Love 43k
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Comment: Comment: How to run allelic imbalance in apeglm
21 months ago Michael Love 43k
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562
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Answer: Answer: multiple condition issue running DESeq
21 months ago Michael Love 43k
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1.1k
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Answer: Answer: Create count matrix from multible quant sf files from different directories
21 months ago Michael Love 43k
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817
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Answer: Answer: Ploting of normalized counts after batch removal
21 months ago Michael Love 43k
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542
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Answer: Answer: makeExampleDESeqDataSet using pilot data
21 months ago Michael Love 43k
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Comment: Comment: Counter-directional LFC shrinkage
21 months ago Michael Love 43k
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1.3k
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Answer: Answer: Counter-directional LFC shrinkage
21 months ago Michael Love 43k
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2.6k
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Comment: Comment: Volcano plot of scRNA-seq data not "centered"
21 months ago Michael Love 43k
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1.4k
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Comment: Comment: Slightly different count plots from R and spreadsheet
21 months ago Michael Love 43k
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1.4k
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Comment: Comment: Slightly different count plots from R and spreadsheet
21 months ago Michael Love 43k
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1.4k
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Answer: Answer: Slightly different count plots from R and spreadsheet
21 months ago Michael Love 43k
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1.2k
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Comment: Comment: DESeq2- Mysterious interaction suppresses DEGs
21 months ago Michael Love 43k
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1.8k
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Answer: Answer: How to run allelic imbalance in apeglm
21 months ago Michael Love 43k
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1.7k
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Comment: Comment: Numerical differences in DESeq2 output depending on different design matrix cons
21 months ago Michael Love 43k
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1.7k
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Answer: Answer: Numerical differences in DESeq2 output depending on different design matrix cons
21 months ago Michael Love 43k
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1.2k
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Answer: Answer: DESeq2- Mysterious interaction suppresses DEGs
21 months ago Michael Love 43k
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0
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877
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Comment: Comment: Assymetric MA plot with no overall trend
21 months ago Michael Love 43k
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1.5k
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Answer: Answer: Can DESeq2 rlog normalized matrix reflects time course result directly?
21 months ago Michael Love 43k
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2.5k
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Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
21 months ago Michael Love 43k
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1
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877
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Answer: Answer: Assymetric MA plot with no overall trend
21 months ago Michael Love 43k
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1
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2.5k
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Comment: Comment: Can I trust the differential expression analysis when the two groups overlap on
21 months ago Michael Love 43k
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1
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1.3k
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Comment: Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
21 months ago Michael Love 43k
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876
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Answer: Answer: normalization across different species for DESeq2 analysis
21 months ago Michael Love 43k
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6.6k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
21 months ago Michael Love 43k
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1
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2.5k
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Answer: Answer: Can I trust the differential expression analysis when the two groups overlap on
21 months ago Michael Love 43k
0
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1
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6.6k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
21 months ago Michael Love 43k
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1
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6.6k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
21 months ago Michael Love 43k
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1
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6.6k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
21 months ago Michael Love 43k
0
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0
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6.6k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
21 months ago Michael Love 43k
0
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1
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6.6k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
21 months ago Michael Love 43k
0
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1
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6.6k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
21 months ago Michael Love 43k
0
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1
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6.6k
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Comment: Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
21 months ago Michael Love 43k
3
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986
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Answer: Answer: How to save the DEXSeq results
21 months ago Michael Love 43k
8,173 results • Page 5 of 164
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