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885
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Comment: Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA
22 months ago Michael Love 43k
0
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1
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2.1k
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Answer: Answer: Filtering and Reference Level for DESeq2
22 months ago Michael Love 43k
1
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1
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885
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Answer: Answer: DESeq2 - Plot Nr. Genes vs Variance explained in PCA
22 months ago Michael Love 43k
0
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0
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982
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Answer: Answer: Help with Complex DESeq2 Design
22 months ago Michael Love 43k
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2.2k
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Comment: Comment: DESeq2 unable to handle large count values
22 months ago Michael Love 43k
1
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739
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Answer: Answer: Need help with creating and plotting temporal clustering analysis of DEGs
22 months ago Michael Love 43k
0
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0
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460
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Answer: Answer: Help with DESeqDataSetFromHTSeqCount
22 months ago Michael Love 43k
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0
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1.6k
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Answer: Answer: lfcShrink error: the line search routine failed
22 months ago Michael Love 43k
0
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908
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Answer: Answer: RNAseq analysis
22 months ago Michael Love 43k
2
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1
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820
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Answer: Answer: With DESeq2 "Not full rank" Error with design
22 months ago Michael Love 43k
0
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0
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912
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Comment: Comment: DESeq2: subtract effect of an isotope control before comparing to a baseline sam
22 months ago Michael Love 43k
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0
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1.2k
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Answer: Answer: Missing Band on Volcano Plot from DESeq2
22 months ago Michael Love 43k
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1
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912
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Answer: Answer: DESeq2: subtract effect of an isotope control before comparing to a baseline sam
22 months ago Michael Love 43k
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0
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1.8k
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Comment: Comment: DESeq2 filtering vs edgeR filtering
22 months ago Michael Love 43k
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1.8k
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Answer: Answer: DESeq2 filtering vs edgeR filtering
22 months ago Michael Love 43k
1
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1
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2.3k
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Comment: Comment: Adding cell population estimates as a covariate in DESeq2 differential gene expr
22 months ago Michael Love 43k
0
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0
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1.1k
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Answer: Answer: Cross-species analysis - how to compute the mid parent value?
22 months ago Michael Love 43k
0
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1
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995
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Answer: Answer: DESeq2: Comparing A Knockout to a Strain
22 months ago Michael Love 43k
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0
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1.7k
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Comment: Comment: DESeq and SVA for batch effect
22 months ago Michael Love 43k
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0
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775
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Answer: Answer: DEseq2 dispersion plot
22 months ago Michael Love 43k
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1
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1.1k
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Answer: Answer: Dispersion estimation step is very slow with latest DESeq2 and glmGamPoi
22 months ago Michael Love 43k
0
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0
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1.8k
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Comment: Comment: DESEQ Inquiry
22 months ago Michael Love 43k
0
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0
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1.9k
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Comment: Comment: Unexpected behavior of lfcShrink() function in DESeq2 analysis
22 months ago Michael Love 43k
0
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0
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491
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Answer: Answer: few significant genes from DESeq2 analysis
22 months ago Michael Love 43k
0
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1
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1.9k
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Comment: Comment: Unexpected behavior of lfcShrink() function in DESeq2 analysis
22 months ago Michael Love 43k
0
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1
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2.9k
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Comment: Comment: How to calculate p value when comparing two sets of DEGs and not applying intera
22 months ago Michael Love 43k
0
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1
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1.9k
views
Comment: Comment: Unexpected behavior of lfcShrink() function in DESeq2 analysis
22 months ago Michael Love 43k
1
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1
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1.8k
views
Comment: Comment: DESEQ Inquiry
22 months ago Michael Love 43k
0
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1
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1.9k
views
Comment: Comment: Unexpected behavior of lfcShrink() function in DESeq2 analysis
22 months ago Michael Love 43k
0
votes
1
reply
2.9k
views
Comment: Comment: How to calculate p value when comparing two sets of DEGs and not applying intera
22 months ago Michael Love 43k
0
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1
reply
2.9k
views
Comment: Comment: How to calculate p value when comparing two sets of DEGs and not applying intera
22 months ago Michael Love 43k
1
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2
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1.6k
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Answer: Answer: DEseq2 coefficient
22 months ago Michael Love 43k
1
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1
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1.8k
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Answer: Answer: DESEQ Inquiry
22 months ago Michael Love 43k
1
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0
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775
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Answer: Answer: Limma Question
22 months ago Michael Love 43k
0
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1
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1.9k
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Comment: Comment: Unexpected behavior of lfcShrink() function in DESeq2 analysis
22 months ago Michael Love 43k
0
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0
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875
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Comment: Comment: library sizes differ extremely after dds
22 months ago Michael Love 43k
1
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1
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893
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Answer: Answer: evaluate the variable importance on genes
22 months ago Michael Love 43k
0
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1
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875
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Answer: Answer: library sizes differ extremely after dds
22 months ago Michael Love 43k
1
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1
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2.9k
views
Comment: Comment: How to calculate p value when comparing two sets of DEGs and not applying intera
22 months ago Michael Love 43k
0
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1
reply
1.9k
views
Comment: Comment: Unexpected behavior of lfcShrink() function in DESeq2 analysis
22 months ago Michael Love 43k
0
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1
reply
1.9k
views
Answer: Answer: Unexpected behavior of lfcShrink() function in DESeq2 analysis
22 months ago Michael Love 43k
0
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0
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34k
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Comment: Comment: DESEq2 Paired samples Before and after treatment
22 months ago Michael Love 43k
0
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0
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2.8k
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Comment: Comment: Normalizing Salmon output count data matrix using DESeq2
22 months ago Michael Love 43k
0
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0
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1.5k
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Comment: Comment: utf-8 codec can't decode byte 0xd5
22 months ago Michael Love 43k
1
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1
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1.0k
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Comment: Comment: vst transformation and zero counts
22 months ago Michael Love 43k
0
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1
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1.0k
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Answer: Answer: vst transformation and zero counts
22 months ago Michael Love 43k
0
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1
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2.9k
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Comment: Comment: How to calculate p value when comparing two sets of DEGs and not applying intera
22 months ago Michael Love 43k
0
votes
1
reply
2.9k
views
Answer: Answer: How to calculate p value when comparing two sets of DEGs and not applying intera
22 months ago Michael Love 43k
0
votes
1
reply
2.8k
views
Comment: Comment: Normalizing Salmon output count data matrix using DESeq2
22 months ago Michael Love 43k
0
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1
reply
4.9k
views
Comment: Comment: DESeq2::sizeFactors() function does not output the sizeFactor table.
22 months ago Michael Love 43k
8,164 results • Page 7 of 164
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