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242
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Answer:
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
14 hours ago
Michael Love
42k
0
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0
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98
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Answer:
Answer: DESeq2- Mysterious interaction suppresses DEGs
14 hours ago
Michael Love
42k
0
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0
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109
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Comment:
Comment: Assymetric MA plot with no overall trend
3 days ago
Michael Love
42k
1
vote
1
reply
248
views
Answer:
Answer: Can DESeq2 rlog normalized matrix reflects time course result directly?
3 days ago
Michael Love
42k
0
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0
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496
views
Comment:
Comment: Can I trust the differential expression analysis when the two groups overlap on
4 days ago
Michael Love
42k
0
votes
1
reply
109
views
Answer:
Answer: Assymetric MA plot with no overall trend
4 days ago
Michael Love
42k
0
votes
1
reply
496
views
Comment:
Comment: Can I trust the differential expression analysis when the two groups overlap on
4 days ago
Michael Love
42k
1
vote
1
reply
235
views
Comment:
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
4 days ago
Michael Love
42k
0
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0
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90
views
Answer:
Answer: normalization across different species for DESeq2 analysis
4 days ago
Michael Love
42k
0
votes
0
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3.1k
views
Comment:
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
4 days ago
Michael Love
42k
0
votes
1
reply
496
views
Answer:
Answer: Can I trust the differential expression analysis when the two groups overlap on
5 days ago
Michael Love
42k
0
votes
1
reply
3.1k
views
Comment:
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
5 days ago
Michael Love
42k
0
votes
1
reply
3.1k
views
Comment:
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
8 days ago
Michael Love
42k
0
votes
1
reply
3.1k
views
Comment:
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
9 days ago
Michael Love
42k
0
votes
0
replies
3.1k
views
Comment:
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
9 days ago
Michael Love
42k
0
votes
1
reply
3.1k
views
Comment:
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
10 days ago
Michael Love
42k
0
votes
1
reply
3.1k
views
Comment:
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
12 days ago
Michael Love
42k
0
votes
1
reply
3.1k
views
Comment:
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
12 days ago
Michael Love
42k
3
votes
0
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148
views
Answer:
Answer: How to save the DEXSeq results
12 days ago
Michael Love
42k
2
votes
0
replies
143
views
Answer:
Answer: Trim/Filter out-of-bounds GRanges
12 days ago
Michael Love
42k
0
votes
0
replies
227
views
Comment:
Comment: Couldn't connect to server while using "pathways"
12 days ago
Michael Love
42k
0
votes
1
reply
3.1k
views
Comment:
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
13 days ago
Michael Love
42k
0
votes
1
reply
3.1k
views
Comment:
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
13 days ago
Michael Love
42k
0
votes
0
replies
189
views
Answer:
Answer: Handling multiple differential expression comparisons
13 days ago
Michael Love
42k
1
vote
0
replies
254
views
Comment:
Comment: Too many significant genes when integrating gtex and tcga
15 days ago
Michael Love
42k
0
votes
0
replies
163
views
Answer:
Answer: DESeq2 v1.35.0
16 days ago
Michael Love
42k
0
votes
0
replies
302
views
Comment:
Comment: log2FoldChange value is way too different when compared with counts(dds)
17 days ago
Michael Love
42k
0
votes
1
reply
302
views
Answer:
Answer: log2FoldChange value is way too different when compared with counts(dds)
17 days ago
Michael Love
42k
0
votes
1
reply
2.6k
views
Comment:
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
18 days ago
Michael Love
42k
1
vote
0
replies
157
views
Answer:
Answer: Fold change calculation in Diffbind vs. DESEQ2?
18 days ago
Michael Love
42k
0
votes
1
reply
169
views
Answer:
Answer: Timecourse RNASeq analysis
18 days ago
Michael Love
42k
0
votes
0
replies
139
views
Answer:
Answer: Padj "NA" with thousands of low count although the raw read counts are quite lar
18 days ago
Michael Love
42k
0
votes
0
replies
227
views
Answer:
Answer: PCA plot suggestions
22 days ago
Michael Love
42k
0
votes
0
replies
253
views
Answer:
Answer: Deseq2. decontXcounts not integers. Useful alternative?
22 days ago
Michael Love
42k
0
votes
0
replies
165
views
Answer:
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
24 days ago
Michael Love
42k
1
vote
0
replies
236
views
Comment:
Comment: Different Shrunk Log2FC according with reference
24 days ago
Michael Love
42k
2
votes
0
replies
328
views
Answer:
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
25 days ago
Michael Love
42k
0
votes
1
reply
2.6k
views
Comment:
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
25 days ago
Michael Love
42k
1
vote
0
replies
251
views
Comment:
Comment: DESeq2 - dispersion estimation when there is none
25 days ago
Michael Love
42k
2
votes
1
reply
251
views
Answer:
Answer: DESeq2 - dispersion estimation when there is none
26 days ago
Michael Love
42k
0
votes
0
replies
449
views
Comment:
Comment: DESeq filtering specific to contrasts
29 days ago
Michael Love
42k
0
votes
0
replies
794
views
Comment:
Comment: DESeq2 setting significant p-value
29 days ago
Michael Love
42k
0
votes
1
reply
449
views
Comment:
Comment: DESeq filtering specific to contrasts
29 days ago
Michael Love
42k
0
votes
1
reply
1.7k
views
Comment:
Comment: Which input file is used for DGEList in EgdeR?
29 days ago
Michael Love
42k
0
votes
1
reply
2.6k
views
Comment:
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
29 days ago
Michael Love
42k
0
votes
0
replies
292
views
Comment:
Comment: DEG with low counts
29 days ago
Michael Love
42k
0
votes
1
reply
449
views
Comment:
Comment: DESeq filtering specific to contrasts
29 days ago
Michael Love
42k
0
votes
0
replies
158
views
Answer:
Answer: rlog transformation
4 weeks ago
Michael Love
42k
0
votes
0
replies
128
views
Answer:
Answer: ONT long-read RNA sequencing - data analysis options
4 weeks ago
Michael Love
42k
0
votes
1
reply
743
views
Answer:
Answer: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
4 weeks ago
Michael Love
42k
7,948 results • Page
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